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Topics migration: Problematic modules

Status: Open.

#12792 In nf-core/modules;

· atrigila opened on Aug 25, 2026

·  

Adopt topic channels in all nf-core modules

hmmer/hmmrank: multi-model domtblout multiplies rank rows and unions coordinates across profiles

Status: Open.

#12787 In nf-core/modules;

· erikrikarddaniel opened on Aug 25, 2026

seqtk/subseq: output filename concatenates input name and ext.prefix with no separator

Status: Open.

#12779 In nf-core/modules;

· erikrikarddaniel opened on Aug 24, 2026

new module: HYPHY/MEME

new moduleAdding a new moduleAdding a new module

Status: Open.

#12767 In nf-core/modules;

· leapicard opened on Aug 21, 2026

Migrate to topic starfusion/detect

Status: Open.

#12735 In nf-core/modules;

· LouisLeNezet opened on Aug 18, 2026

Migrate to topic starfusion/build

Status: Open.

#12734 In nf-core/modules;

· LouisLeNezet opened on Aug 18, 2026

Migrate to topic sigprofiler

Status: Open.

#12726 In nf-core/modules;

· LouisLeNezet opened on Aug 18, 2026

new module: cnvkit/referencepooled

new moduleAdding a new moduleAdding a new module

wishlistclosed after a year if no one assignedclosed after a year if no one assigned

Status: Open.

#12668 In nf-core/modules;

· paddyharker1005 opened on Aug 13, 2026

update module: cellranger

update module

Status: Open.

#12660 In nf-core/modules;

· nathanweeks opened on Aug 12, 2026

[FEATURE] Support generating a pooled reference in cnvkit/reference

Status: Open.

#12656 In nf-core/modules;

· paddyharker1005 opened on Aug 11, 2026

Port aspera_cli from fetchngs to the modules repo

Status: Open.

#12649 In nf-core/modules;

· maxulysse opened on Aug 11, 2026

bakta/bakta: gzip output files

Status: Open.

#12643 In nf-core/modules;

· erikrikarddaniel opened on Aug 10, 2026