Precommit upgrade

[dweindl]

Addressing unparenthesized implicit string concatenation, implicit Optional, subprocess.run without explicit check argument and some others.

[codecov-commenter]

Codecov Report

❌ Patch coverage is 83.17757% with 18 lines in your changes missing coverage. Please review.
✅ Project coverage is 75.57%. Comparing base (73b680c) to head (64eb595).

Files with missing lines	Patch %	Lines
petab/petablint.py	0.00%	3 Missing ⚠️
petab/v2/converters.py	25.00%	2 Missing and 1 partial ⚠️
petab/v2/core.py	76.92%	3 Missing ⚠️
petab/v2/lint.py	66.66%	1 Missing and 1 partial ⚠️
petab/v2/petab1to2.py	50.00%	1 Missing and 1 partial ⚠️
petab/v1/lint.py	50.00%	1 Missing ⚠️
petab/v1/parameters.py	75.00%	1 Missing ⚠️
petab/v2/_helpers.py	0.00%	1 Missing ⚠️
petab/v2/extensions/sciml_lint.py	0.00%	1 Missing ⚠️
petab/v2/models/model.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #510      +/-   ##
==========================================
+ Coverage   75.54%   75.57%   +0.03%     
==========================================
  Files          65       65              
  Lines        7359     7357       -2     
  Branches     1325     1323       -2     
==========================================
+ Hits         5559     5560       +1     
+ Misses       1296     1293       -3     
  Partials      504      504              

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