26.3 fb migrate sql queries

GeneticsCore/resources/queries/study/dnaFlagSummary.sql

@@ -91,7 +91,7 @@ SELECT
   sum(coalesce(s.quantity, 0)) as totalQuantity
 FROM Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.DNA_Bank.samples s
 --include DNA Bank workbook only
-WHERE s.dateremoved is null and sampleType = 'Buffy Coat'
+WHERE s.dateremoved is null and LOWER(sampleType) = LOWER('Buffy Coat')
 GROUP BY s.subjectId
 ) s2 ON (s2.subjectId = d.Id)
 

GeneticsCore/resources/queries/study/mhcFlagSummary.sql

@@ -25,7 +25,7 @@ SELECT
   --NOTE: if changing this logic, processingGeneticsBlooddraws.sql should also be updated
   CASE
     WHEN f3.Id is not null THEN false
-    WHEN (d.species = 'RHESUS MACAQUE' AND d.Id.age.ageInYears <= 5.0 AND d.geographic_origin = 'India' AND (a.Id IS NOT NULL OR d.gender = 'm')) THEN true
+    WHEN (LOWER(d.species) = LOWER('RHESUS MACAQUE') AND d.Id.age.ageInYears <= 5.0 AND d.geographic_origin = 'India' AND (a.Id IS NOT NULL OR LOWER(d.gender) = LOWER('m'))) THEN true
     else false
   END as isMHCRequired,
   CASE

ONPRC_EHR_ComplianceDB/resources/queries/EHR_ComplianceDB/ComplianceHostIdentifier.sql

@@ -1,4 +1,4 @@
 
 select value from Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.sla.Reference_Data
-where columnname = 'employeehost'
+where LOWER(columnname) = LOWER('employeehost')
   And enddate is null

ONPRC_EHR_ComplianceDB/resources/queries/EHR_ComplianceDB/Measles45DayAlert.sql

@@ -27,7 +27,7 @@ FROM ehr_compliancedb.completiondates c
     SELECT
         c1.employeeid,
         emp.email,
-        emp.Firstname + ' ' + emp.Lastname as Name,
+        emp.Firstname || ' ' || emp.Lastname as Name,
         emp.unit,
         emp.category,
         emp.location,

ONPRC_EHR_ComplianceDB/resources/queries/EHR_ComplianceDB/complianceemployee.sql

@@ -1,3 +1,3 @@
 select value from ehr_complianceDB.Compliance_Reference_Data
-where columnName = 'employeeHost'
+where LOWER(columnName) = LOWER('employeeHost')
 And endDate is null

onprc_billing/resources/queries/onprc_billing/ARTCoreAliases.sql

@@ -4,7 +4,7 @@
 -- The category on the alias table is OHSU GL. There could be other alias that will be used for charges that are not associated with a center project.
 -- I hope at some point when this is automated, or when ART core understands they can use the center project for charging.
 
-SELECT alias, alias + ' - ' + COALESCE(investigatorName, 'N/A') as aliasPI
+SELECT alias, alias || ' - ' || COALESCE(investigatorName, 'N/A') as aliasPI
 FROM Site.{substitutePath moduleProperty('ONPRC_Billing','BillingContainer_Public')}.onprc_billing_public.aliases
 WHERE (budgetstartdate IS NOT NULL AND (budgetEndDate IS NULL OR budgetEndDate >= TIMESTAMPADD('SQL_TSI_DAY', -30, now()) ))
 

onprc_billing/resources/queries/onprc_billing/ARTCoreBIllingCharges.sql

@@ -1,5 +1,5 @@
 -- Query to get ART core chargeable items
-SELECT rowid, category, activerate.unitCost, itemCode + ' - ' + name + '; Unit Cost - ' + CAST(activerate.unitCost as varchar) as chargeName
+SELECT rowid, category, activerate.unitCost, itemCode || ' - ' || name || '; Unit Cost - ' || CAST(activerate.unitCost as varchar) as chargeName
 FROM Site.{substitutePath moduleProperty('ONPRC_Billing','BillingContainer_Public')}.onprc_billing_public.chargeableItems  -- Changed by kolli, 5/5/22
 -- FROM "/onprc/admin/finance/public".onprc_billing_public.chargeableItems
 WHERE category = 'ART Core'

onprc_billing/resources/queries/onprc_billing/Activealias_2020.sql

@@ -36,4 +36,4 @@ SELECT a.alias,
        a.FUndingSourceName,
        a.Org
 FROM aliases a 
-where aliasEnabled = 'y' 
+where LOWER(aliasEnabled) = LOWER('y') 

onprc_billing/resources/queries/onprc_billing/LeaseFeeRates_Final.sql

@@ -28,7 +28,7 @@ cr.unitCost as NIHRate,
 --case statement when dayeleaselength > 0 then dayleasr leanth else 1  as quantity
 case
     when r.DayLeaseLength> 0 then r.dayleaseLength
-    when r.researchowned = 'Yes' then 0
+    when LOWER(r.researchowned) = LOWER('Yes') then 0
     when d.birthType = 'Born to Resource Dam' then 0
     Else 1
     End as Quantity,
@@ -66,7 +66,7 @@ When d.creditResource is not Null then d.creditTo
     End  as CreditAccount,
 case
     WHen r.releaseType = 'No Charge' then 0
-    when r.researchOwned = 'Yes' then 0
+    when LOWER(r.researchOwned) = LOWER('Yes') then 0
     when r.DayLeaseLength > 0 and r.daylease = 'yes' then (r.dayleaseLength * r.CalculatedRate)
     when r.revisedrate is not null and r.revisedrate > r.CalculatedRate then (r.revisedRate - r.CalculatedRate)
     when r.revisedrate is not null and r.revisedrate < r.CalculatedRate then (r.CalculatedRate - r.RevisedRate)

onprc_billing/resources/queries/onprc_billing/LeaseFeeReleaseAdjustment.sql

@@ -29,7 +29,7 @@ a5.id as ESPFAnimal,
 (SELECT max(rowid) as rowid FROM Site.{substitutePath moduleProperty('onprc_billing','BillingContainer')}.onprc_billing_public.chargeableItems ci WHERE ci.name = javaConstant('org.labkey.onprc_billing.ONPRC_BillingManager.LEASE_FEE_ADJUSTMENT') and ci.active = true) as chargeId,
 CASE
   when (fl.id Is Not Null) then 0
-  when (d.researchOwned = 'yes') then 0
+  when (LOWER(d.researchOwned) = LOWER('yes')) then 0
   else 1
   end as quantity,
 lf2.chargeId as leaseCharge1,
@@ -93,4 +93,4 @@ and (a.enddateFinalized >= startDate and a.enddateFinalized <= enddate)
 AND a.qcstate.publicdata = true
 and lf.chargeID  is not null
 --AND lf.active = true
-AND a2.id IS NULL and a.participantID not like '[a-z]%'
+AND a2.id IS NULL and NOT (LOWER(LEFT(a.participantID,1)) BETWEEN 'a' AND 'z')

onprc_billing/resources/queries/onprc_billing/LeaseFee_Demographics.sql

@@ -42,7 +42,7 @@ Case
 	--When da.id
 	when ( a.date = a.id.birth.date and t.id is not null) then 'TMB Birth'
 
-	when a.project.use_category = 'Research' then 'Research'
+	when LOWER(a.project.use_category) = LOWER('Research') then 'Research'
 	Else a.project.use_category
 end
 as	AssignmentType,
@@ -118,4 +118,4 @@ Left outer join Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.
 Left outer join Site.{substitutePath moduleProperty('EHR','EHRStudyContainer')}.study.tmbDam tmb on tmb.id = a.id  and (tmb.date <= a.date and tmb.enddate >= a.date or tmb.endDate is Null)
 where a.datefinalized >= startDate and (a.datefinalized <= enddate or a.enddate is null)
 
-and a.id not like  '[a-z]%'
+and NOT (LOWER(LEFT(a.id,1)) BETWEEN 'a' AND 'z')

onprc_billing/resources/queries/onprc_billing/LeaseFee_LeaseType.sql

@@ -37,7 +37,7 @@ b.dam,
 da.project as DualAssigned,
 Case
 --Research Owned Animal
-	When l.researchowned = 'yes' then 'researchOwned'
+	When LOWER(l.researchowned) = LOWER('yes') then 'researchOwned'
 --Adult Research Assignment P51 Animal (animal unassigned and adult)
 ----**Dual Assigned Obese JMac Control Infant Lease
 	When l.id.age.ageinyears < 3 and da.projectname  = '0622-01'and (l.id !=r.id or r.id is null) then 'Obese JMac Control Infant'
@@ -50,9 +50,9 @@ Case
 --Dual assigned ESPF using different Chared Code
 --	When da.projectName  = '0492-03' then 'DualAssignedESPF'
 --Dual assigned TMB Male on Day Lease
-	When l.agegroup = 'Adult'  and da.projectname = '0300'  and l.dayLease = 'yes' then 'TMB Adult Day Lease'
+	When LOWER(l.agegroup) = LOWER('Adult')  and da.projectname = '0300'  and l.dayLease = 'yes' then 'TMB Adult Day Lease'
 --Dual assigned Obese Male Day Lease
-	When l.agegroup = 'Adult'  and da.projectname = '0833'  and l.dayLease = 'yes' then 'OBESE Adult Day Lease'
+	When LOWER(l.agegroup) = LOWER('Adult')  and da.projectname = '0833'  and l.dayLease = 'yes' then 'OBESE Adult Day Lease'
 --Full LEase P51 adult
 	When l.id.age.ageinyears > 1 and l.daylease <> 'yes' and (da.projectname  <> '0833' or da.projectName is Null) then 'Research Assignment P51 Adult'
 --**Dual Assigned TMB-Dam Assigned Use lease_TMB as Process --------------------------------------------------------------------------------------------------------
@@ -73,13 +73,13 @@ Case
 ----**Dual Assigned Obese JMac WSD Infant Lease
 	When l.id.age.ageinyears < 3 and da.projectname  = '0622-01'and l.id =r.id then 'Obese JMac WSD Infant'
 ----**Dual Assigned Obese Adult Day Lease
-	When l.agegroup = 'adult' and da.projectname  = '0833' and l.daylease = 'yes' then 'OBESE Adult Day Lease'
+	When LOWER(l.agegroup) = LOWER('adult') and da.projectname  = '0833' and l.daylease = 'yes' then 'OBESE Adult Day Lease'
 ----**Dual Assigned Obese Adult Male Lease
-	When l.agegroup = 'adult' and da.projectname  = '0833' and l.daylease = 'no' and Cast(l.projectedReleaseCondition as Varchar(20)) != 'Terminal' then 'OBESE Adult Male Lease'
+	When LOWER(l.agegroup) = LOWER('adult') and da.projectname  = '0833' and l.daylease = 'no' and Cast(l.projectedReleaseCondition as Varchar(20)) != 'Terminal' then 'OBESE Adult Male Lease'
 ----Dual Assigned Obese Adult Male Terminal Lease
-	When l.agegroup = 'adult' and da.projectname  = '0833' and l.daylease = 'no' and Cast(l.projectedReleaseCondition as Varchar(20)) = 'Terminal' then 'OBESE Adult Terminal Leasel'
+	When LOWER(l.agegroup) = LOWER('adult') and da.projectname  = '0833' and l.daylease = 'no' and Cast(l.projectedReleaseCondition as Varchar(20)) = 'Terminal' then 'OBESE Adult Terminal Leasel'
 --when Adult Animal Assigned to Research project
-	when l.agegroup = 'adult' and da.project  ='0300' then 'Aninal Lease Fee -TMB'
+	when LOWER(l.agegroup) = LOWER('adult') and da.project  ='0300' then 'Aninal Lease Fee -TMB'
 --Infant Research Assignment P51 Animal Day Lease -------------------------------------------------------------------------------------------------------
 	When l.id.age.ageinyears < 1 and l.daylease = 'yes' then 'Day Lease Research Assignment P51 Infant'
 --Infant Research Assignment P51 Animal-------------------------------------------------------------------------------------------------------

onprc_billing/resources/queries/onprc_billing/LeaseFee_UnitCost_RateCalc.sql

@@ -28,7 +28,7 @@ SELECT d.Id,
        d.removesubsidy,
        d.canRaiseFA,
        r.ChargeID, --integer
-       RateCalc(d.alias,r.chargeID,d.project,d.Date,d.farate)  as CalculatedRate,
+       RateCalc(d.alias,r.chargeID,d.project, CAST(d.Date AS DATE),d.farate)  as CalculatedRate,
        r.revisedChargeID
 
 FROM Site.{substitutePath moduleProperty('onprc_billing','BillingContainer')}.onprc_billing.leasefee_rateData r join
@@ -51,7 +51,7 @@ select
     '' as BirthType,
     'automatic_adjustment' as AssignmentTypeNA,
     '' as DayLease,
-    '' as DayLeaseLength, --integer
+    CAST(null AS INTEGER) as DayLeaseLength, --integer; empty string here breaks the UNION with the numeric column above
     '' as MultipleAssignments,
     a.date,
     a.enddate as projectedrelease,
@@ -67,7 +67,7 @@ select
     a.removeSubsidy as removesubsidy,
     a.canRaiseFA as canRaiseFA,
     a.leaseCharge1, --integer
-    RateCalc(a.alias,a.leasecharge2,a.projectID, a.date,a.farate) as RevisedRate,
+    RateCalc(a.alias,a.leasecharge2,a.projectID, CAST(a.date AS DATE),a.farate) as RevisedRate,
     a.leaseCharge2
 
 FROM Site.{substitutePath moduleProperty('onprc_billing','BillingContainer')}.onprc_billing.LeaseFeeReleaseAdjustment a

onprc_billing/resources/queries/onprc_billing/clinPathRun_ExemptCharges.sql

@@ -21,5 +21,5 @@ c.enteredSinceVetReview,
 c.QCState,
 c.objectID as sourceRecord,
 c.datefinalized as billingDate
-FROM study.clinpathRuns c left outer join Site.{substitutePath moduleProperty('ONPRC_Billing','BillingContainer')}.lists.Labfee_NoChargeProjects p on c.project.DisplayName  = p.project
+FROM study.clinpathRuns c left outer join Site.{substitutePath moduleProperty('ONPRC_Billing','BillingContainer')}.lists.Labfee_NoChargeProjects p on c.project = p.project
 where (p.dateDisabled is null and p.project is Null)

onprc_billing/resources/queries/onprc_billing/labworkFeeRates.sql

@@ -107,13 +107,13 @@ SELECT
   CASE WHEN alias.fiscalAuthority.faid IS NULL THEN 'Y' ELSE null END as isMissingFaid,
   CASE
     WHEN alias.aliasEnabled IS NULL THEN 'N'
-    WHEN alias.aliasEnabled != 'Y' THEN 'N'
+    WHEN LOWER(alias.aliasEnabled) != LOWER('Y') THEN 'N'
     ELSE null
   END as isAcceptingCharges,
   CASE
     WHEN (alias.budgetStartDate IS NOT NULL AND CAST(alias.budgetStartDate as date) > CAST(p.date as date)) THEN 'Prior To Budget Start'
     WHEN (alias.budgetEndDate IS NOT NULL AND CAST(alias.budgetEndDate as date) < CAST(p.date as date)) THEN 'After Budget End'
-    WHEN (alias.projectStatus IS NOT NULL AND alias.projectStatus != 'ACTIVE' AND alias.projectStatus != 'No Cost Ext' AND alias.projectStatus != 'Partial Setup') THEN 'Grant Project Not Active'
+    WHEN (alias.projectStatus IS NOT NULL AND LOWER(alias.projectStatus) != LOWER('ACTIVE') AND alias.projectStatus != 'No Cost Ext' AND alias.projectStatus != 'Partial Setup') THEN 'Grant Project Not Active'
     ELSE null
   END as isExpiredAccount,
   CASE WHEN (TIMESTAMPDIFF('SQL_TSI_DAY', p.date, curdate()) > 45) THEN 'Y' ELSE null END as isOldCharge,
@@ -181,7 +181,7 @@ SELECT
   mc.item,
   mc.category,
   case
-    When mc.project.displayName in (Select project from Site.{substitutePath moduleProperty('ONPRC_Billing','BillingContainer')}.lists.LabFee_NoChargeProjects where enddate is null)
+    When mc.project in (Select project from Site.{substitutePath moduleProperty('ONPRC_Billing','BillingContainer')}.lists.LabFee_NoChargeProjects where enddate is null)
         then 0
         else mc.unitcost
         End as unitCost,

onprc_billing/resources/queries/onprc_billing/leaseFeeRates.sql

@@ -213,13 +213,13 @@ SELECT
   CASE WHEN alias.fiscalAuthority.faid IS NULL THEN 'Y' ELSE null END as isMissingFaid,
   CASE
     WHEN alias.aliasEnabled IS NULL THEN 'N'
-    WHEN alias.aliasEnabled != 'Y' THEN 'N'
+    WHEN LOWER(alias.aliasEnabled) != LOWER('Y') THEN 'N'
     ELSE null
   END as isAcceptingCharges,
   CASE
     WHEN (alias.budgetStartDate IS NOT NULL AND CAST(alias.budgetStartDate as date) > CAST(p.date as date)) THEN 'Prior To Budget Start'
     WHEN (alias.budgetEndDate IS NOT NULL AND CAST(alias.budgetEndDate as date) < CAST(p.date as date)) THEN 'After Budget End'
-    WHEN (alias.projectStatus IS NOT NULL AND alias.projectStatus != 'ACTIVE' AND alias.projectStatus != 'No Cost Ext' AND alias.projectStatus != 'Partial Setup') THEN 'Grant Project Not Active'
+    WHEN (alias.projectStatus IS NOT NULL AND LOWER(alias.projectStatus) != LOWER('ACTIVE') AND alias.projectStatus != 'No Cost Ext' AND alias.projectStatus != 'Partial Setup') THEN 'Grant Project Not Active'
     ELSE null
   END as isExpiredAccount,
 

onprc_billing/resources/queries/onprc_billing/leaseFeeRates_2020.sql

@@ -37,7 +37,7 @@ SELECT d.Id,
        r.exemptionRate,
        r.Multiplier,
        r.subsidy,
-       RateCalc(r.AliasAtTime,r.chargeID,d.project,d.Date,.4)  as CalculatedRate,
+       RateCalc(r.AliasAtTime,r.chargeID,d.project, CAST(d.Date AS DATE),.4)  as CalculatedRate,
        null as revisedRate,
        r.revisedChargeID,
        r.revisedSubsidy
@@ -63,7 +63,7 @@ select
     '' as BirthType,
     'automatic_adjustment' as AssignmentTypeNA,
     '' as DayLease,
-    '' as DayLeaseLength, --integer
+    CAST(null AS INTEGER) as DayLeaseLength, --integer; empty string here breaks the UNION with the numeric column above
     '' as MultipleAssignments,
        null as dualassignment,
        null as creditto,
@@ -86,8 +86,8 @@ select
     null as exemptionRate,
      null as Multiplier,
      null as subsidy,
-    RateCalc(a.alias,a.leasecharge1,a.projectID, a.date,a.farate) as CalculatedRate,
-    RateCalc(a.alias,a.leasecharge2,a.projectID, a.date,a.farate) as RevisedRate,
+    RateCalc(a.alias,a.leasecharge1,a.projectID, CAST(a.date AS DATE),a.farate) as CalculatedRate,
+    RateCalc(a.alias,a.leasecharge2,a.projectID, CAST(a.date AS DATE),a.farate) as RevisedRate,
     a.leaseCharge2,
     null as RevisedSubsidy
 

onprc_billing/resources/queries/onprc_billing/leaseFee_RateReview.sql

@@ -35,14 +35,14 @@ Case When r.aliasAtTime is Null then 'y'
 --Alias Accepting Charges
 CASE
     WHEN a.aliasEnabled IS NULL THEN 'N'
-    WHEN a.aliasEnabled != 'Y' THEN 'N'
+    WHEN LOWER(a.aliasEnabled) != LOWER('Y') THEN 'N'
     ELSE null
   END as isAcceptingCharges,
 --Expired Alias
   CASE
     WHEN (a.budgetStartDate IS NOT NULL AND CAST(a.budgetStartDate as date) > CAST(r.assignmentdate as date)) THEN 'Prior To Budget Start'
     WHEN (a.budgetEndDate IS NOT NULL AND Cast(a.budgetEndDate as date ) < CAST(r.assignmentdate as date)) THEN 'After Budget End'
-    WHEN (a.projectStatus IS NOT NULL AND a.projectStatus != 'ACTIVE' AND a.projectStatus != 'No Cost Ext' AND a.projectStatus != 'Partial Setup') THEN 'Grant Project Not Active'
+    WHEN (a.projectStatus IS NOT NULL AND LOWER(a.projectStatus) != LOWER('ACTIVE') AND a.projectStatus != 'No Cost Ext' AND a.projectStatus != 'Partial Setup') THEN 'Grant Project Not Active'
     ELSE null
   END as isExpiredAccount,
 -->45 Days Olde

onprc_billing/resources/queries/onprc_billing/leaseFees.sql

@@ -163,8 +163,8 @@ SELECT
   a.releaseCondition,
   a.assignCondition,
   a.releaseType,
-  a.ageAtTime.AgeAtTimeYearsRounded as ageAtTime,
   ' ' as ESPFAnimal,
+  a.ageAtTime.AgeAtTimeYearsRounded as ageAtTime,
   'Lease Setup Fees' as category,
   (SELECT rowid FROM onprc_billing_public.chargeableItems ci WHERE ci.active = true AND ci.name = javaConstant('org.labkey.onprc_billing.ONPRC_BillingManager.LEASE_SETUP_FEES')) as chargeId,
   1 AS quantity,
@@ -209,8 +209,8 @@ a.projectedReleaseCondition,
 a.releaseCondition,
 a.assignCondition,
 a.releaseType,
-a.ageAtTime.AgeAtTimeYearsRounded as ageAtTime,
 a5.id as ESPFAnimal,
+a.ageAtTime.AgeAtTimeYearsRounded as ageAtTime,
 'Lease Fees' as category,
 --////This selectes the charge ID to be used
 (SELECT max(rowid) as rowid FROM onprc_billing_public.chargeableItems ci WHERE ci.name = javaConstant('org.labkey.onprc_billing.ONPRC_BillingManager.LEASE_FEE_ADJUSTMENT') and ci.active = true) as chargeId,
@@ -266,4 +266,4 @@ WHERE a.releaseCondition != a.projectedReleaseCondition
 and (A.id != A5.id or A5.id is Null)
 AND a.enddatefinalized is not null AND CAST(a.enddatefinalized AS DATE) >= CAST(STARTDATE AS DATE) AND CAST(a.enddatefinalized AS DATE) <= CAST(EndDate as DATE)
 AND a.qcstate.publicdata = true AND lf.active = true
-AND a2.id IS NULL and a.participantID not like '[a-z]%'
+AND a2.id IS NULL and NOT (LOWER(LEFT(a.participantID,1)) BETWEEN 'a' AND 'z')

onprc_billing/resources/queries/onprc_billing/leasefee_rateData.sql

@@ -44,7 +44,7 @@ Case
 	Else Null
 	End as chargeID,
 --lf.chargeId,
-Null as RevisedChargeID,
+CAST(Null as Integer) as RevisedChargeID, --typed so PostgreSQL can join it to chargeRates.chargeId
 
 1 as quantity
 

onprc_billing/resources/queries/onprc_billing/leasefee_rateFunction.sql

@@ -19,7 +19,7 @@ t.faRate,
 t.removesubsidy,
 t.canRaiseFA,
 
-RateCalc(c.alias,c.chargeID,c.projectID,c.assignmentDate,t.farate)  as CalculatedRate
+RateCalc(c.alias,c.chargeID,c.projectID, CAST(c.assignmentDate AS DATE),t.farate)  as CalculatedRate
 
 FROM Site.{substitutePath moduleProperty('onprc_billing','BillingContainer')}.onprc_Billing.leasefee_RateData c
 	left join Site.{substitutePath moduleProperty('onprc_billing','BillingContainer')}.onprc_Billing.chargeRates r