Tighten birth and conception entry and drop legacy nbri_ehr tables

nbri_ehr/resources/data/editable_lookups.tsv

@@ -18,7 +18,6 @@ ehr_lookups	bcs_score	Clinical	Body Condition Score	Clinical observation fixed v
 ehr_lookups	behavior_abnormality	Clinical	Behavior Abnormality	Clinical observation fixed values.
 ehr_lookups	behavior_mgmt_codes	Behavior	Behavior Management Codes	Behavior observation fixed values.
 ehr_lookups	behavior_types	Behavior	Behavior Types	Behavior observation fixed values.
-ehr_lookups	birth_condition	Colony Management	Birth Condition	Birth condition values.
 ehr_lookups	blood_draw_reason	Clinical	Blood Draw Reason	Used in blood draw datasets.
 ehr_lookups	blood_draw_tube_type	Clinical	Blood Draw Tube Type	Used in blood draw datasets.
 ehr_lookups	blood_sample_type	Clinical	Blood Sample Types	Used in blood draw datasets.
@@ -68,7 +67,6 @@ ehr_lookups	geographic_origins	Colony Management	Geographic Origins	Used in demo
 ehr_lookups	hernia_types	Clinical	Hernia Types	Clinical observation fixed values.
 ehr_lookups	housing_reason	Housing	Housing Move Reason	Used in housing dataset for location transfers.
 ehr_lookups	hyd_score	Clinical	Hydration Score	Clinical observation fixed values.
-ehr_lookups	id_history_type	Colony Management	Id History Type	
 ehr_lookups	incision_score	Clinical	Incision Status	Clinical observation fixed values.
 ehr_lookups	indoor_outdoor	Colony Management	Indoor/Outdoor	Cage details
 ehr_lookups	keyword	Clinical	Keyword	Clinical observation fixed values.
@@ -117,6 +115,7 @@ ehr_lookups	respiratory_observations	Clinical	Respiratory Observations	Used in c
 ehr_lookups	routes	Clinical	Treatment Routes	Used in drug and treatment datasets.
 ehr_lookups	sib_score	Behavior	SIB Score	Behavior observation fixed values.
 ehr_lookups	skin_problem	Clinical	Skin Problems	Clinical observation fixed values.
+ehr_lookups	social_code	Colony Management	Social Code	Rearing and acquisition codes recorded once per animal at birth or arrival.
 ehr_lookups	source	Colony Management	Source	
 ehr_lookups	species	Colony Management	Species	
 ehr_lookups	snomed	Research	Treatments	List of animal treatments.

nbri_ehr/resources/data/lookup_sets.tsv

@@ -16,7 +16,6 @@ bcs_score	BCS Store	value	title
 behavior_abnormality	Behavior Abnormality	value
 behavior_mgmt_codes	Behavior Management Codes	value
 behavior_types	Behavior Types	value
-birth_condition	Birth Condition	value	title
 blood_draw_reason	Blood Draw Reason	value
 blood_sample_type	Blood Sample Types	value
 breeding_type	Breeding Type	value	title
@@ -55,7 +54,6 @@ genitourinary_obs	Genitourinary Observations	value
 hernia_types	Hernia Types	value
 housing_reason	Housing Reason	value
 hyd_score	Hyd Score	value
-id_history_type	Id History Type	value	title
 incision_score	Incision Status	value
 indoor_outdoor	Indoor/Outdoor	value
 keyword	Keyword	value	title
@@ -102,6 +100,7 @@ req_order_type	Req Order Type	value	title
 respiratory_observations	Respiratory Observations	value	title
 sib_score	SIB Score	value
 skin_problem	Skin Problem	value
+social_code	Social Code	value	title
 status_codes	Status Code Field Values	value	title
 stool_score	Stool Score	value
 stool_types	Stool Types	value

nbri_ehr/resources/data/lookupsManifest.tsv

@@ -18,7 +18,6 @@ bcs_score
 behavior_abnormality
 behavior_mgmt_codes
 behavior_types
-birth_condition
 blood_draw_reason
 blood_draw_tube_type
 blood_sample_type
@@ -56,7 +55,6 @@ fecal_score
 fecal_smear_score
 feed_assess_types
 flag_categories
-flag_values
 gastro_types
 gender_codes
 general_obs
@@ -66,7 +64,6 @@ geographic_origins
 hernia_types
 housing_reason
 hyd_score
-id_history_type
 incision_score
 indoor_outdoor
 lameness
@@ -117,6 +114,7 @@ snomed
 species
 species_codes
 skin_problem
+social_code
 status_codes
 stool_score
 stool_types

nbri_ehr/resources/data/lookupsManifestTest.tsv

@@ -18,7 +18,6 @@ bcs_score
 behavior_abnormality
 behavior_mgmt_codes
 behavior_types
-birth_condition
 blood_draw_reason
 blood_draw_tube_type
 blood_sample_type
@@ -66,7 +65,6 @@ geographic_origins
 hernia_types
 housing_reason
 hyd_score
-id_history_type
 incision_score
 indoor_outdoor
 lameness
@@ -114,6 +112,7 @@ respiratory_observations
 routes
 sib_score
 skin_problem
+social_code
 source
 snomed
 species

nbri_ehr/resources/data/social_code.tsv

@@ -0,0 +1,6 @@
+value	title
+AC	Acquired
+CC	Corn crib rearing/living
+FC	Field cage rearing/living
+MR	Mother-rearing (for indoors)
+NR	Nursery-rearing