diff --git a/OpenLdapSync/module.properties b/OpenLdapSync/module.properties index 1c6af271c..74f15f36c 100644 --- a/OpenLdapSync/module.properties +++ b/OpenLdapSync/module.properties @@ -5,4 +5,3 @@ License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 ManageVersion: false URL: https://github.com/BimberLab/DiscvrLabKeyModules -SupportedDatabases: mssql, pgsql diff --git a/OpenLdapSync/resources/schemas/dbscripts/sqlserver/openldapsync-0.00-18.21.sql b/OpenLdapSync/resources/schemas/dbscripts/sqlserver/openldapsync-0.00-18.21.sql deleted file mode 100644 index 6d983e259..000000000 --- a/OpenLdapSync/resources/schemas/dbscripts/sqlserver/openldapsync-0.00-18.21.sql +++ /dev/null @@ -1,50 +0,0 @@ -/* - * Copyright (c) 2018 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - --- Create schema, tables, indexes, and constraints used for OpenLdapSync module here --- All SQL VIEW definitions should be created in openldapsync-create.sql and dropped in openldapsync-drop.sql -CREATE SCHEMA openldapsync; -GO - -CREATE TABLE openldapsync.ldapSyncMap ( - rowid int identity(1,1), - provider varchar(1000), - sourceId varchar(1000), - labkeyId int, - type char(1), - - created datetime, - container entityid -); - -GO - ---this table was originally in the LDK module -CREATE PROCEDURE openldapsync.handleUpgrade AS -BEGIN -IF EXISTS( SELECT name from sys.tables WHERE name = 'ldapSyncMap' AND schema_id = (SELECT schema_id FROM sys.schemas WHERE name = 'ldk' ) ) - BEGIN - INSERT INTO openldapsync.ldapSyncMap (provider, sourceId, labkeyId, type, created, container) - SELECT provider, sourceId, labkeyId, type, created, (select entityid from core.containers WHERE name IS NULL) as container - FROM ldk.ldapSyncMap; - END -END; -GO - -EXEC openldapsync.handleUpgrade -GO - -DROP PROCEDURE openldapsync.handleUpgrade \ No newline at end of file diff --git a/QueryExtensions/module.properties b/QueryExtensions/module.properties index 7d84b0d58..332aea9fe 100644 --- a/QueryExtensions/module.properties +++ b/QueryExtensions/module.properties @@ -4,4 +4,3 @@ Label: Query Extensions Description: This module contains low-level extensions to the LabKey Query layer License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 -SupportedDatabases: mssql, pgsql diff --git a/QueryExtensions/resources/schemas/dbscripts/sqlserver/queryextensions-0.00-23.000.sql b/QueryExtensions/resources/schemas/dbscripts/sqlserver/queryextensions-0.00-23.000.sql deleted file mode 100644 index d12b98db4..000000000 --- a/QueryExtensions/resources/schemas/dbscripts/sqlserver/queryextensions-0.00-23.000.sql +++ /dev/null @@ -1,20 +0,0 @@ -/* - * Copyright (c) 2023 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - --- Create schema, tables, indexes, and constraints used for QueryExtensions module here --- All SQL VIEW definitions should be created in queryextensions-create.sql and dropped in queryextensions-drop.sql -CREATE SCHEMA queryextensions; -GO \ No newline at end of file diff --git a/SequenceAnalysis/module.properties b/SequenceAnalysis/module.properties index 7413d035a..8131cc0ce 100644 --- a/SequenceAnalysis/module.properties +++ b/SequenceAnalysis/module.properties @@ -5,4 +5,3 @@ Description: This is the core module for DISCVR-seq, which is a suite of modules URL: https://github.com/BimberLab/DiscvrLabKeyModules License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 -SupportedDatabases: mssql, pgsql diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-0.00-11.30.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-0.00-11.30.sql deleted file mode 100644 index bfb63aa6e..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-0.00-11.30.sql +++ /dev/null @@ -1,2060 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - - -CREATE SCHEMA sequenceanalysis; -GO - --- ---------------------------- --- Table structure for sequenceanalysis.module_properties --- ---------------------------- -CREATE TABLE sequenceanalysis.module_properties -( - RowId INT IDENTITY(1,1) NOT NULL, - - Prop_name VARCHAR(255) DEFAULT NULL, - StringValue VARCHAR(255) DEFAULT NULL, - FloatValue float DEFAULT NULL, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_module_properties PRIMARY KEY (rowId) -); - - --- ---------------------------- --- Table structure for sequenceanalysis.site_module_properties --- ---------------------------- -CREATE TABLE sequenceanalysis.site_module_properties -( - prop_name VARCHAR(255) DEFAULT NULL, - stringvalue VARCHAR(255) DEFAULT NULL, - floatvalue float DEFAULT NULL, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_site_module_properties PRIMARY KEY (prop_name) -); - --- ---------------------------- --- Table structure for sequenceanalysis.sequence_analyses --- ---------------------------- -CREATE TABLE sequenceanalysis.sequence_analyses -( - RowId INT IDENTITY(1,1) NOT NULL, - - Type VARCHAR(255) DEFAULT NULL, - runId INTEGER DEFAULT NULL, - sampleId INTEGER DEFAULT NULL, - inputFile INTEGER DEFAULT NULL, - outputFile INTEGER DEFAULT NULL, - makePublic bit DEFAULT 0, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_sequence_analyses PRIMARY KEY (rowId) -); - - --- ---------------------------- --- Table structure for sequenceanalysis.barcodes --- ---------------------------- -CREATE TABLE sequenceanalysis.barcodes -( - tag_name VARCHAR(255) NOT NULL, - sequence VARCHAR(255) NOT NULL, - group_name VARCHAR(255) DEFAULT NULL, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_barcodes PRIMARY KEY (tag_name), - CONSTRAINT UNIQUE_barcodes UNIQUE (sequence) -); - --- ---------------------------- --- Records of barcodes --- ---------------------------- -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID01', 'ACGAGTGCGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID02', 'ACGCTCGACA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID03', 'AGACGCACTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID04', 'AGCACTGTAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID05', 'ATCAGACACG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID06', 'ATATCGCGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID07', 'CGTGTCTCTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID08', 'CTCGCGTGTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID09', 'TAGTATCAGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID10', 'TCTCTATGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID11', 'TGATACGTCT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID12', 'TACTGAGCTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID13', 'CATAGTAGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID14', 'CGAGAGATAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID15', 'ATACGACGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID16', 'TCACGTACTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID17', 'CGTCTAGTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID18', 'TCTACGTAGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID19', 'TGTACTACTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID20', 'ACGACTACAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID21', 'CGTAGACTAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID22', 'TACGAGTATG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID23', 'TACTCTCGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID24', 'TAGAGACGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID25', 'TCGTCGCTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID26', 'ACATACGCGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID27', 'ACGCGAGTAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID28', 'ACTACTATGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID29', 'ACTGTACAGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID30', 'AGACTATACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID31', 'AGCGTCGTCT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID32', 'AGTACGCTAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID33', 'ATAGAGTACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID34', 'CACGCTACGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID35', 'CAGTAGACGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID36', 'CGACGTGACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID37', 'TACACACACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID38', 'TACACGTGAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID39', 'TACAGATCGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID40', 'TACGCTGTCT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID41', 'TAGTGTAGAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID42', 'TCGATCACGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID43', 'TCGCACTAGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID44', 'TCTAGCGACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID45', 'TCTATACTAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID46', 'TGACGTATGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID47', 'TGTGAGTAGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID48', 'ACAGTATATA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID49', 'ACGCGATCGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID50', 'ACTAGCAGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID51', 'AGCTCACGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID52', 'AGTATACATA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID53', 'AGTCGAGAGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID54', 'AGTGCTACGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID55', 'CGATCGTATA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID56', 'CGCAGTACGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID57', 'CGCGTATACA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID58', 'CGTACAGTCA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID59', 'CGTACTCAGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID60', 'CTACGCTCTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID61', 'CTATAGCGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID62', 'TACGTCATCA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID63', 'TAGTCGCATA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID64', 'TATATATACA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID65', 'TATGCTAGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID66', 'TCACGCGAGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID67', 'TCGATAGTGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID68', 'TCGCTGCGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID69', 'TCTGACGTCA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID70', 'TGAGTCAGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID71', 'TGTAGTGTGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID72', 'TGTCACACGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID73', 'TGTCGTCGCA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID74', 'ACACATACGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID75', 'ACAGTCGTGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID76', 'ACATGACGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID77', 'ACGACAGCTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID78', 'ACGTCTCATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID79', 'ACTCATCTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID80', 'ACTCGCGCAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID81', 'AGAGCGTCAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID82', 'AGCGACTAGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID83', 'AGTAGTGATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID84', 'AGTGACACAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID85', 'AGTGTATGTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID86', 'ATAGATAGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID87', 'ATATAGTCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID88', 'ATCTACTGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID89', 'CACGTAGATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID90', 'CACGTGTCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID91', 'CATACTCTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID92', 'CGACACTATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID93', 'CGAGACGCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID94', 'CGTATGCGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID95', 'CGTCGATCTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID96', 'CTACGACTGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID97', 'CTAGTCACTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID98', 'CTCTACGCTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID99', 'CTGTACATAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID100', 'TAGACTGCAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID101', 'TAGCGCGCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID102', 'TAGCTCTATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID103', 'TATAGACATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID104', 'TATGATACGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID105', 'TCACTCATAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID106', 'TCATCGAGTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID107', 'TCGAGCTCTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID108', 'TCGCAGACAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID109', 'TCTGTCTCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID110', 'TGAGTGACGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID111', 'TGATGTGTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID112', 'TGCTATAGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID113', 'TGCTCGCTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID114', 'ACGTGCAGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID115', 'ACTCACAGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID116', 'AGACTCAGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID117', 'AGAGAGTGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID118', 'AGCTATCGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID119', 'AGTCTGACTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID120', 'AGTGAGCTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID121', 'ATAGCTCTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID122', 'ATCACGTGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID123', 'ATCGTAGCAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID124', 'ATCGTCTGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID125', 'ATGTACGATG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID126', 'ATGTGTCTAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID127', 'CACACGATAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID128', 'CACTCGCACG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID129', 'CAGACGTCTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID130', 'CAGTACTGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID131', 'CGACAGCGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID132', 'CGATCTGTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID133', 'CGCGTGCTAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID134', 'CGCTCGAGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID135', 'CGTGATGACG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID136', 'CTATGTACAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID137', 'CTCGATATAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID138', 'CTCGCACGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID139', 'CTGCGTCACG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID140', 'CTGTGCGTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID141', 'TAGCATACTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID142', 'TATACATGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID143', 'TATCACTCAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID144', 'TATCTGATAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID145', 'TCGTGACATG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID146', 'TCTGATCGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID147', 'TGACATCTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID148', 'TGAGCTAGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID149', 'TGATAGAGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID150', 'TGCGTGTGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID151', 'TGCTAGTCAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID152', 'TGTATCACAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID153', 'TGTGCGCGTG', 'GSMIDs'); - - --- ---------------------------- --- Table structure for sequenceAnalysis.ref_nt_sequences --- ---------------------------- -CREATE TABLE sequenceAnalysis.ref_nt_sequences -( - RowId INT IDENTITY(1,1) NOT NULL, - - Name VARCHAR(220), - Sequence text NOT NULL, - Category1 VARCHAR(100), --aka Virus or DNA - Category2 VARCHAR(100), --aka Strain or DNA_Region - Category3 VARCHAR(100), --aka Locus - Category4 VARCHAR(100), --aka Lineage - - Mol_type VARCHAR(100), - Genbank VARCHAR(100), - Ipd_accession VARCHAR(100), - Species VARCHAR(100), - Geographic_origin VARCHAR(200), - - Status bit DEFAULT 1, - Comments text DEFAULT NULL, - - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_ref_nt_sequences PRIMARY KEY (rowid) -); - - --- ---------------------------- --- Data for sequenceAnalysis.ref_nt_sequences --- ---------------------------- -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac239', 'Virus', 'SIVmac239', 'RNA', 'SIV', 'GCATGCACATTTTAAAGGCTTTTGCTAAATATAGCCAAAAGTCCTTCTACAAATTTTCTAAGAGTTCTGATTCAAAGCAGTAACAGGCCTTGTCTCATCATGAACTTTGGCATTTCATCTACAGCTAAGTTTATATCATAAATAGTTCTTTACAGGCAGCACCAACTTATACCCTTATAGCATACTTTACTGTGTGAAAATTGCATCTTTCATTAAGCTTACTGTAAATTTACTGGCTGTCTTCCTTGCAGGTTTCTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCTATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTTTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAAGTGGCCCTTAATGTTACAGAAAGCTTTGATGCCTGGAATAATACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTGGTACTCTGCAGATTTGGTATGTGAACAAGGGAATAACACTGGTAATGAAAGTAGATGTTACATGAACCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAACATTATTGGGATGCTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTGACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATACAGCTAACCAGAAGCCAAAGGAACAGCATAAAAGGAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAAAGTGGAACAATGAGACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAAGAAAATATAACAGCCCTCCTAGAGGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAAGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGATCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACAGAGGATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGgAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac251', 'Virus', 'SIVmac251', 'RNA', 'SIV', 'TGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATGTACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGAGGCATTATTTAATGCAGCCAGCTCAAACTTCCAAGTGGGATGACCCTTGGGGAGAGGTTCTAGCGTGGAAGTTTGATCCAACTCTAGCCTACACTTATGAGGCATATGCTAGATACCCAGAAGAGTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAGGGAAACTCGCTGAGATAGCAGGGACTTTCCACAAGGGGATGTTATGGGGAGGAGCCGGTCGGGAACACCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCAGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCCAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCAACTCGGTACTCGGTAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGAGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCCGAACAGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAGGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTGTTATCCAGGAAGGGATAATAAGATAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCGGCGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAGCAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGCTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAATGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAGCTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGCTTAAGAGCAGAACAAACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGACCAGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAGAAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAGGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGACGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTATTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAAAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACTCCGATTAACATTTTTGGTAGGAATTTGCTAACAGCTCTGGGGATGTCTCTAAATCTTCCCATAGCTAAGGTAGAGCCTGTAAAAGTCACCTTAAAGCCAGGAAAGGTTGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCCATAAAGAAAAAAGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACAGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGGATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGCTAAAGGAACTCTTAAATAGCATAGGGTTCTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCGACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAGATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTTAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAGGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAGTGGGATTTTATCTCAACGCCACCACTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTAGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGACAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAACCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAGGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAAGCTATACATGGGCAGGTAAATTCAGATCTAGGGACTTGGCAAATGGACTGTACCCATCTAGAAGGAAAAATAGTCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAAGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCCTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAAATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCCCTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAGAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAGGAACTTTTGGACAGATGTAACACCAGACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAAGTTCCCGAGAGCTCATAGGTACCAGGTACCAAGCCTACAGTACTTAGCACTAAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCAGTAAACCACCTACCAAGGGAGCTGATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACAAAGCTATGTAAAATACAGATACTTGTGTTTAATGCAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACACGGGGCAGGAGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGCCCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAATTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTTAGAGGCGGATGCAACCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAACTATACCGCCCTCTTGAGGCGTGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAGGGATTGGGGATATGTTATGAGCAGTCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCAATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTCTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAATTGGCCCTTAATGTTACAGAAAGCTTTGATGCTTGGGAGAATACAGTCACAGAACAGGCAATAGAGGACGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCATCAACAACAATAACAACAGCAGCACCAACATCAGCACCAGTATCAGAAAAAATAGACATGGTCAATGAGACTAGTTCTTGTATAGCTCAGAATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCACCATGACAGGGTTAAAAAGAGACAAGACAAAGGAGTACAATGAAACTTGGTACTCTACAGATTTGGTTTGTGAACAAGGGAATAGCACTGATAATGAAAGCAGATGCTACATGAATCACTGTAACACTTCTGTTATCCAAGAATCTTGTGACAAACATTATTGGGATACTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAACAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTAACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAGGATAGGGATGTAACTACCCAGAGGCCAAAGGAACGGCATAGAAGGAATTACGTGCCGTGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGACTGATGGAAACCAAACTAGTATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAGTTGGGAGATTATAAATTAGTAGAGATCACTCCGATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGGACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTAAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAGACTGGAACAATGATACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAGGAAAATATAACAGCCCTCCTAGAAGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAATTTATGTAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGTAGACTCATACCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAGGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGCATACCAGATCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACGAAGGGTTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAAGCCGGCTGGAGATCTGCGACAGAAACTCTTGCGGGCGCGTGGAGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATCCTCGCAATCCCTAGGAGGATTAGGCAAGGGCTTGAGCTCACGCTCTTGTGAGGGACAGAAATACAATCAGGGGCAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAAAAAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGGAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAGCAATGACTTACAAATTGGCAATAGATATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATGTACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGAGGCATTATTTAATGCAGCCAGCTCAAACTTCCAAGTGGGATGACCCTTGGGGAGAGGTTCTAGCGTGGAAGTTTGATCCAACTCTAGCCTACACTTATGAGGCATATGCTAGATACCCAGAAGAGTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAGGGAAACTCGCTGAGATAGCAGGGACTTTCCACAAGGGGATGTTATGGGGAGGAGCCGGTCGGGAACACCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCAGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCCAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCAACTCGGTACTCGGTAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGAGAAACCGAAGCAGGAAAATCCCTAGCATGAAGATGGACTAATATAGGAGAGACCT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SHIV89.6P', 'Virus', 'SHIV89.6P', 'RNA', 'SIV', 'CAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGTTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATCGTCACGGAGACACTCTAGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTGTAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGGAGTAAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCACAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACAAATAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCCTATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATGAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATTTGAATATCACTAAGAATACTACTAATCTCACTAGTAGCAGCTGGGGAATGATGGAGGAAGGAGAAATAAAAAATTGCTCTTTCTATATCACCACAAGCATAAGAAATAAGGTAAAGAAAGAATATGCACTTTTTAATAGACTTGATGTAGTACCAGTAAAAAATACTAGTAATACTAAGTATAGGTTAATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTCAGCCAATTCCCATACATTATTGTGTCCCGGCTGGGTTTGCGATACTAAAGTGTAACAATAAGACATTCAATGGATCAGGACCATGCACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTGGTGTCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGACATAGTAATTAGATCTGAAGATTTCACAGACAATGTTAAAACCATAATAGTACAGCTAAATGAATCTGTAGTAATTAATTGTACAAGACCCAACAACAATACAAGAGAAAGGTTATCTATAGGACCAGGGAGAGCATTTTATGCAAGAAGAAACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTACAACAGATAGTTATAAAATTAAGAGAAAAATTTAGGAATAAAACAATAGCCTTTAATCAATCCTCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAGCACAACTGTTTAATAGTACTTGGAATGTTGCTGGAGGGACAAATGGCACTGAAGGAAATGACATAATCACACTCCAATGCAGAATAAAACAAATTATAAATATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCACAGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTACTAACAAGAGATGGAGGTAATAGTACTGAGACTGAGACTGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCAATAGGAGTAGCACCCACCAGGGCAAAGAGAAGAACAGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGGCTATTATTGTCTGGTATAGTGCAGCAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGAATATGTTGCGACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAGGGATCAACAGCTCATGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTTCTGTGCCTTGGAATGTTAGTTGGAGTAATAAATCTGTGGATGATATTTGGAATAACATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAGACTATATATATGACTTACTTGAAAAATCGCAAACCCAACAAGAAAAGAATGAAAAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAGATTATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCTCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATCAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGGAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTATACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGTTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('E660', 'Virus', 'E660', 'RNA', 'SIV', 'GGGACTTGAAGGAGAGTGAGAGCTCCTGAGTACGGMTGWGTGAAGGCAGTAAGGGCGGCAGGAACAAAMCACGACGGAGAGCTCCTAGAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAGAAAAGTCATAGGACTGAGTTCCCTACTTTTGAGGAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGTTACGGCCCAACGGAAAGAAAAAGTATATGTTGAAGCATRTAGTATGGGCAGCAAATGAATTGGACAGATTTGGATTAGCAGAAAGCCTGTTGGATAACAAAGAAGGTTGTCAAAAAATTCTTTCRGTTTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTTTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTGGAAACAGGAACAGCAGACAAAATGCCAGCAACAAGCAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAARTAGGTGGCAATTATGTCCACCTACCCTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTRGTAGAAGAGAAAAAATTTGGGGCAGAGGTAGTGCCAGGATTTCAAGCGCTATCAGAAGGCTGCACTCCCTATGATATCAATCAAATGCTAAATTGTGTAGGAGAACATCAGGCAGCCATGCAAATTATTAGAGAGATTATAAATGAAGAAGCTGCCGATTGGGATTTACAACACCCGCARCCAGGTCCACTACCAGCAGGGCAACTTAGAGAGCCAAGAGGATCAGACATTGCAGGAACTACTAGTACAGTAGATGAACAAATCCAATGGATGTACAGGCAACAAAACCCYATACCAGTAGGCAACATTTATAGAAGGTGGATCCAATTAGGGCTGCAGAAATGTGTAAGAATGTATAACCCAACAAACATTTTAGATGTGAAACAAGGACCAAAAGAGCCATTTCAAAGCTACGTAGATAGATTCTAYAAAAGTCTAAGAGCAGAGCAAACAGATCCGGCAGTAAAGAATTGGATGACCCAAACACTGCTGATTCAAAATGCTAACCCAGATTGTAAATTRGTGCTCAAGGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGAATAGGAGGGCCAGGACAAAAAGCTAGATTAATGGCAGAAGCATTGAAAGAGGCACTGAGACCAGACCAACTCCCATTTGCAGCAGTCCAACAGAAAGGACAAAGGAGGACAATCAAGTGTTGGAATTGTGGAAAGGAGGGACACTCTGCAAGACAATGCAGGGCCCCTAGAAGACAGGGCTGCTGGRRGTGYGGAAAMACGGGTCATGTTATGGCCAAATGCCCTGAAAGACAGGCGGGTTTTTTAGGGCTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATGCCTCAGGGGCTGATACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAAGAATTACATGAAGATGGGCAGAAAGCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTCACTGCCTACATTGAAGAACAGCCCGTAGAAGTATTATTAGATACAGGGGCTGACGATTCAATTGTAGCAGGGATAGAATTGGGTCCAAATTATACCCCTAAAGTAGTAGGAGGAATAGGAGGCTTCATTAATACCAAAGAATATAAAGATGTAAAAATAAAAGTCTTAGGCAAGGTAATTAAGGGAACAATTATGACGGGAGATACCCCAATTAATATTTTTGGCAGAAATTTGCTAACAGCTATGGGCATGTCYTTAAATCTCCCCATAGCTAAGGTGGAGCCTATAAAAGTAACACTAAAACCAGGGAAAGAAGGACCAAAATTGAGACAGTGGCCGCTATCAAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCGTATAACACCCCCACTTTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGGATGCTAATAGATTTTAGAGAATTRAATAAGGTCACTCAAGACTTTACAGAAGTACAGTTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGGAGGATCACAGTATTGGATGTAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTCAGGCARTACACTGCCTTTACTTTACCATCAGTAAATAATGCWGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAGGGGTCACCAGCTATTTTTCAGTATACTATGAGAAATGTATTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACCCTGATCCAATACATGGATGACATCTTAATAGCTAGTGATAGAACAGATTTAGAGCATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTRAACGGCATAGGATTCTCYACCCCAGARGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAGAAAATAGAGTTGCCACAAAGAGAGACCTGGACAGTAAATGACATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACATCTTTGCAGACTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAAYAAGATAATTCTCAGTCAAGAACAAGAAGGATGTTACTACCAAGAGGGAAAACCAATAGAGGCAACAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAAGACAAAGTACTGAAAGTAGGTAAATTTGCAAAGGTTAAAAATACACATACAAATGGAGTCAGATTAYTAGCACACGTAGTGCAGAAAATAGGAAAAGAAGCACTAGTAATTTGGGGAGAGGTGCCAAAATTCCATTTGCCAGTAGAAAGAGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGTRACCTGGATACCAGATTGGGACTTTGTGTCAACACCTCCCTTAGTCAGATTAGTCTTCAACCTAGTAAAAGAGCCTATACAGGGGGCAGAAACATTYTATGTAGATGGATCCTGTAATAGGCAGTCAAGAGAAGGAAAAGCAGGCTATGTGACGGATAGGGGCAGAGACAAAGCAAAACTTTTAGAACAGACTACCAACCAACAAGCAGAGTTGGAAGCCTTTTATCTAGCCTTARCAGATTCGGGACCRAAAGCAAATATTATAGTAGATTCCCAATATGTTATGGGCATAATAGCAGGTCAACCCACTGAATCAGAAAGTAGGTTAGTAAACCAGATAATAGAGGAGATGATTAAAAARGAAGCAATTTATGTAGCATGGGTRCCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTAGATCACCTGGTTAGCCAGGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCACAAGAAGAGCATGAAAAGTACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGTTTACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAAATGCCACCAGAAAGGAGAAGCCATACATGGGCAAGTAAATGCAGAACTAGGGACTTGGCAAATGGACTGTACGCACCTAGAAGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTCATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGTTAAAGTTAGCTGGCAGATGGCCTATCACACATCTGCATACTGATAATGGTGCCAATTTCACATCACAAGAAGTGAAAATGGTTGCCTGGTGGGCAGGGATTGAACAGACCTTTGGGGTGCCTTATAATCCACAGAGCCAAGGAGTAGTGGAAGCAATGAACCATCATTTAAAAACCCAGATAGATAGAATTAGAGAACAAGCAAACTCAATAGAGACYATAGTACTAATGGCAGTTCATTGYATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAGATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGAATTGGATAGTGGTTCCCACTTGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAAGACCTACAGATGGCTTGTTATGTGCCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGAGTAATTTTCCCATTAAGRGATGAGACTCATTTGGAAGTACAAGGATATTGGAATTTGGCACCAGAAAAAGGATGGCTCAGTACTCATGCAGTAAGAATAACCTGGTACTCCAGAAATTTCTGGACAGATGTAACACCAGATTATGCAGACACTTTACTGCATAGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACGAAGGGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAAAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTAAGTCATGTCAGATCCCAGGGAGAGGATCCCACCTGGAAACAGTGGGGAAGAAACAATAGAAGARGCCTTCGAATGGCTAAACAGAACAGTAGAAGGAATAAACAGGGCAGCAGTAAATCACCTGCCGAGGGAGCTAATTTTCCAGGTTTGGCGAAGGTCCTGGGAATACTGGCATGATGAWATGGGRATGTCAGAAAGCTACACAAAATATAGATACTTGTGCTTGATACAGAAAGCTCTGTTTGTGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGARGRGCATGGGGCAGGGGGATGGAGAACAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGGCAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCATGGGATGAATGGGTAGTGGAAGTTCTGGAGGAATTAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATTTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAACTCATTAGAATCCTGCAGAGAGCACTCTTCATCCATTTCAGAAGTGGATGTGCCCACTCCAGAATCGGCCAATCTAGAGGAGGAAATCCTCTATCAACTATACCGCCCTCTAGAGACATGCTATAACAAGTGCTACTGTAAGAGGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGAATATGCTATGAGCAGCACCGAAGAAGAACTCCGAAAAAGACTAAGGCTAATCCACTTCCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTAGTAAGTGCTTTAGAGATTTATTGTGTTCAATATGTAACAGTATTCTATGGTGTACCAGCATGGAAGAATGCGACAATTCCCCTCTTCTGTACAACCAGGAATAGGGACACTTGGGGAACAACACAATGCTTGCCAGATAATGATGATTACTCAGAATTGGCAATCARTATCACAGAGGCTTTTGATGCTTGGAATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTGAAACATCCATTAAGCCCTGTGTAAAACTCACCCCACTATGTATAGCAATGAGATGTAATAAAACTGAGACAGATAGGTGGGGTTTGACAAGRAACGCAGGGACAACAACAACAACAACAACAACAACAACAGCAGCAACACCAAGTGTRGCAGAAAATGTTATAAATGAAAGTAATCCTTGCATAAAAAATAATAGTTGTGCAGGCTTGGAACAGGAGCCCATGATAGGTTGTAAATTTAACATGACAGGGTTAAAAAGGGACAAAAGGATAGAATATAATGAAACATGGTATTCAAGAGATTTAATCTGTGAGCAGTCAGCGAATGAAAGTGAGAGTAAATGTTACATGCATCATTGTAACACCAGTGTTATTCAGGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATATTGTGCACCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGCTCCTAACTGTTCTAAGGTAGTGGTTTCTTCATGCACAAGAATGATGGAGACGCAAACCTCTACTTGGTTTGGCTTCAATGGTACTAGGGCAGAAAATAGAACATACATTTATTGGCATGGCAAAAGTAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATGAGATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCAGGGTTGGTCTTCCATTCGCAACCCATAAATGAGAGACCAAAACAGGCCTGGTGCTGGTTTGGAGGAAGCTGGAAAGAGGCCATCCAGGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATGATACTAAGAAAATTAATCTAACAGCTCCAGCAGGAGGAGATCCAGAAGTCACTTTTATGTGGACAAATTGTAGAGGAGAATTCTTATACTGCAAAATGAATTGGTTTCTTAATTGGGTAGAGGACAGAGACCAAAAGRGTAGCAGATGGAGACAACAAAATACGAGAGAGCGACAGAAGAAAAATTATGTGCCATGTCATATTAGACAAATAATCAACACGTGGCACAAAGTAGGCAAAAATGTATATTTGCCTCCTAGGGAAGGAGACCTGACATGTAATTCCACTGTAACTAGTCTCATAGCAGAGATAGATTGGACCAATAACAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGAGATTACTCCAATTGGCTTGGCCCCCACAAGTGTAAGAAGGTACACCACAACTGGTGCCTCAAGAAATAAGAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCGACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCGGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACTAAGAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTGAAGGATCAGGCGCAGCTAAATTCATGGGGATGTGCTTTTAGGCAAGTCTGTCACACTACTGTACCATGGCCAAATGAAACATTGGTGCCTAATTGGAGCAATATGACTTGGCAAGAGTGGGAAAGACAGGTTGACTTCCTAGAGGCAAATATAACTCAATTATTAGAAGAAGCACAAATTCAGCAAGAAAAGAATATGTATGAATTGCAAAAACTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAAGATATATACAATATGGTGTACTAATAGTTTTAGGAGTAGTAGGGTTAAGAATAGTAATATATGTAGTGCAGATGTTAGCTAGGTTAAGACAGGGTTATAGGCCAGTGTTCTCTTCCCCTCCCGCTTATGTTCAGCAGATCCCTATCCACAAGGGCCAGGAACCGCCAACCAAAGAAGGAGAAGAAGGAGAAGGTGGAGACAGAGGTGGCAACAGATCTTGGCCTTGGCAGATAGAATATATTCATTTCCTAATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAGCTGCAGGGATTGGCTATTGAGGAYCTACCAGRTCCTCCAACCAGTRCTCCAGAGCCTCTCAACGACGTYGCAAAGAGTCCGTGAAGTCATCAGAATTGGAATAGCCTACCTACAATATGGGTGGCGTTATTTCCAAGAAGCAGTGCAGGCGTGGTGGAAATTTGCGCGAGAGACTCTTGCAAGCGCGTGGAGAGACATATGGGAGACTCTGGGAAGGGTTGGAAGAGGGATACTCGCAATCCCKAGGCGCRTCAGGCAAGGGYTTGAGCTCRCTCTCTTGTGAGCCTCAGAAATATAGTGAGGGACAATATATGAATACCCCCTGGAGGAACCCAGCAGCAGAAAGAGCAAAATTAGGTTATAGACAACAAAACATGGATGATGTGGATGATGAAGATGATGACTTAGTARGTGTCTCAGTGCACCCAAGAGTCCCCTTAAGGGCCATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAATGAGAAAAGACATAGAATATTAGATATGTACATGGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACATCAGGGCCAGGAACTAGATACCCTATGTACTATGGGTGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGARGCTCAGGAAGACGAGACACATTGCCTGATGCATCCGGCACAGACTCATCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAATTAGCTTATAGCTATAAGGCATTTATTAAGTACCCAGAAGAGTTTGGTAGTAAGTCAGRCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCCTTATTAAAATGGCTGACAAGAAGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAGGGRCTKTCACATGGGGAGGTWCTGGGGAGGAACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTCTCTGTATAAATATAACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTAGAAGTAAGCAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATCTCGGTACTCGACAYATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('HXB2', 'Virus', 'HXB2', 'RNA', 'HIV', 'GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTATAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTC'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac251_CMstock', 'Virus', 'SIVmac251_CMstock', 'RNA', 'SIV', 'XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCGGCGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAGAGTCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAGCAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGCTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAGCTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGCTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAATCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGATTCTACAAAAGCTTAAGAGCAGAACAAACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGACCAGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGAGGACCAAAAAAGCCAATTAAATGTTGGAATTGTGGGAAAGAAGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGACGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAGGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATCTTCCCATAGCTAAGGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGTTGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAARGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACAGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGGATTACAGTACTGGAYATAGGTGACGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTCTTAAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCGACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTTTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAGATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATGCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTTAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAGGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCACTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAGGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAACCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAGGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACATGTGATAAATGTCATCAGAAAGGAGAAGCTATACATGGGCAGGTAAATTCGGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAGTCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAAGTAATTCCACAAGAAACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAAGCAGATGGCCTGTTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCATCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAAATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAGTATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTATAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAGAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAGGAACTTTTGGACAGATGTAACACCAGACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGAACCAGGTACCAAGTCTACAGTACTTAGCACTGAGAGTAGTAAGTGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACAYGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAGAGACCTCCAGAAAATGAAGGCCCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCAACCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAACTATACCGCCCTCTTGAGGCGTGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAGGGCTTGGGGATATGTTATGAGCAGTCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCAATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTCTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATRRTGATTATTCAGAATTGGCCMTTAATGTTACAGAAAGCTTTGATGCTTGGGAGAATACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAAATGGGGATTAACAAAATCATCAACAACAACAACAGCATCAACAACAAGGACAACATCAGCAAAAATAGACATGGTCAATGAGACTAGTTCTTGTATAACTCATAATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAGTTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAGGAGTACAATGAAACTTGGTACTCTACAGATTTGGTTTGTGAACAAGGGAATAGCACTGATAATGAAAGTAGATGCTACATGAATCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAGCATTATTGGGATACTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGAGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAATTGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAGATCAATTTGACGGCTCCTAGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTTCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATCTAACTCTAACTACCCAGAAGCTAAGGGAACGGCATAAAAGGAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGACTGATGGAAATCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGGACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAGACTGGAACAATGATACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAGGAAAATATAACGGCCCTTCTAGAAGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAGGTATATACAATATGGAATTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTCCCAGCAGATCCATACCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAGGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGATCCTCCAACCAATACTCCAGGGGCTCTCTGCGACCCTACGGAGAATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAAGCCGGCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATCCTCGCAATCCCTAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTACATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATGTAGATGAGGAAGATGATGACTTGGTAGGGGTACCAGTGATGCCACGAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGATATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATGTACTTAGAAAAGGAGGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTGCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTAGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAGACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_PA', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCGAAAGCAGGTACTGATTCGAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGATGATTGTCGAGCTTGCGGAAAAGGCAATGAAAGAGTATGGAGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACTCACTTGGAAGTATGCTTCATGTATTCAGATTTTCATTTCATCAATGAGCAAGGCGAATCAATAATAGTAGAGCCTGAGGACCCAAATGCACTTTTAAAACACAGATTTGAGATAATAGAGGGACGAGATCGTACAATGGCATGGACAGTTGTAAACAGTATTTGCAACACCACAGGAGCTGAGAAACCAAAGTTTCTGCCAGATCTGTATGATTACAAAGAGAATAGATTCATCGAGATTGGAGTGACAAGGAGGGAAGTTCACATATACTATCTGGAAAAGGCCAACAAAATTAAATCTGAAAAGACACACATTCACATTTTCTCATTCACTGGCGAAGAAATGGCCACAAAGGCCGATTACACTCTCGATGAAGAAAGCAGGGCTAGGATTAAAACCAGACTATTCACCATAAGACAAGAAATGGCAAGCAGGGGTCTTTGGGACTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGGACAATGCGCAGGCTTGCTGACCAAAGCCTTCCGCCGAACTTCTCCTGCATTGAGAATTTTAGAGCCTATGTGGATGGATTTGAACCGAACGGCTACATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAAGTAAATGCTAGAATTGAGCCTTTTTTGAAAACAACACCACGACCAATTAGACTTCCGGATGGGCCTCCTTGTTTTCAGCGGTCAAAATTCCTGCTGATGGATTCTTTAAAATTAAGCATTGAGGATCCAAATCATGAAGGAGAGGGAATACCACTATATGATGCAATCAAGTGTATGAGAACATTCTTTGGATGGAAAGAACCCTCTGTTGTCAAGCCACACGAGAAGGGAATAAATCCGAATTATCTGCTGTCATGGAAGCAGGTATTGGAAGAGCTGCAGGACATTGAGAGTGAGGAGAAGATTCCAAGAACAAAGAACATGAAAAAAACGAGTCAGCTAAAGTGGGCACTTGGTGAGAACATGGCACCAGAGAAGGTTGATTTTGATGACTGTAAAGATATAAGCGATTTGAAGCAATATGATAGTGACGAACCTGAATTAAGGTCATTTTCAAGTTGGATCCAGAATGAATTCAACAAGGCATGCGAGCTGACCGATTCAATCTGGATAGAGCTCGATGAGATTGGAGAAGATGTGGCCCCGATTGAACACATTGCAAGCATGAGAAGAAATTACTTCACAGCTGAGGTGTCCCATTGCAGAGCCACAGAATATATAATGAAGGGGGTATACATTAATACTGCTTTGCTTAATGCATCCTGTGCAGCAATGGATGATTTCCAACTAATTCCCATGATAAGCAAATGTAGAACTAAAGAGGGAAGGAGAAAGACCAATTTGTACGGCTTTATCATAAAAGGAAGATCTCACTTAAGGAATGACACCGATGTGGTAAACTTTGTGAGCATGGAATTTTCCCTCACTGACCCAAGACTTGAGCCACACAAATGGGAGAAGTACTGTGTTCTCGAGATAGGAGATATGCTTCTAAGGAGTGCAATAGGCCAAGTGTCAAGGCCCATGTTCTTGTATGTAAGGACAAATGGAACCTCAAAAATTAAAATGAAATGGGGAATGGAGATGAGGCGTTGCCTCCTCCAATCCCTTCAACAAATAGAGAGCATGATTGAAGCTGAATCCTCTGTCAAGGAGAAAGACATGACAAAAGAGTTTTTTGAGAATAGATCAGAAACATGGCCCATTGGAGAGTCACCAAAGGGAGTGGAAGAAGGTTCCATTGGGAAAGTATGCAGGACACTATTGGCTAAGTCAGTATTCAATAGTCTGTATGCATCGCCACAATTAGAAGGATTTTCAGCTGAGTCAAGAAAGTTGCTCCTCATTGTTCAGGCTCTTAGGGACAATCTGGAGCCTGGGACCTTTGATATTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCTTCTTGGTTCAACTCCTTCCTAACACATGCATTGAGATAGTTGGGGCAATGCTACTATTTACTATCCATACTGTCCAAAAAAGTACCTTGTTTCTACTAATAGGAGACGTGTGTG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_PB1', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAGGCAAACCATTTGAATGGATGTCAATCCGACCTTACTTTTCTTAAAAGTGCCAGCACAAAATGCTATAAGCACAACTTTTCCTTATACTGGTGATCCTCCTTACAGCCATGGGACAGGAACAGGGTACACCATGGATACAGTCAACAGGACACATCAGTACTCAGAAAGAGGAAGATGGACAAAAAATACCGAAACTGGAGCACCGCAACTCAACCCAATTGATGGACCACTACCAAAAGACAATGAACCAAGTGGCTATGCCCAAACAGATTGTGTATTAGAAGCAATGGCTTTCCTTGAGGAATCCCATCCTGGTATTTTTGAAAACTCTTGTATTGAAACAATGGAGGTTGTTCAGCAAACAAGGGTGGACAAACTGACACAAGGCAGACAGACCTATGACTGGACTCTAAATAGAAACCAGCCTGCTGCCACAGCATTGGCCAACACTATAGAAGTGTTCAGATCAAACGGCCTCATAGCAAATGAATCTGGGAGGCTAATAGACTTCCTTAAAGATGTAATGAAGTCGATGGACAGAGACGAAGTAGAGATCACAACACATTTTCAGAGAAAGAGGAGGGTGAGAGACAATGTAACTAAAAAAATGGTGACCCAAAGAACAATAGGCAAAAAGAAACATAAATTAGACAAAAGAAGTTACCTAATTAGGGCATTAACCCTGAACACAATGACCAAAGATGCTGAGAGGGGGAAACTAAAACGTAGAGCAATTGCAACCCCAGGAATGCAAATAAGGGGGTTTGTATACTTTGTTGAGACACTGGCAAGAAGCATATGTGAAAAGCTTGAACAATCAGGGTTGCCAGTTGGGGGAAATGAAAAGAAAGCAAAGTTAGCAAATGTTGTAAGGAAGATGATGACCAACTCCCAGGACACTGAAATTTCTTTCACCATCACTGGAGATAACACAAAATGGAACGAAAATCAAAACCCTAGAATGTTTTTGGCCATGATCACATATATAACCAAAAATCAGCCTGAATGGTTCAGAAATATTCTAAGTATTGCTCCAATAATGTTTTCAAACAAAATGGCGAGACTAGGTAAGGGGTACATGTTTGAAAGCAAGAGTATGAAACTGAGAACTCAAATACCTGCAGAGATGCTAGCCAACATAGATTTGAAATATTTCAATGATTCAACTAAAAAGAAAATTGAAAAAATCCGGCCATTATTAATAGATGGAACTGCATCATTGAGTCCTGGAATGATGATGGGCATGTTCAATATGTTAAGCACCGTCTTGGGCGTCTCCATTCTGAATCTTGGGCAAAAGAGATACACCAAGACTACTTACTGGTGGGATGGTCTTCAATCGTCTGATGATTTTGCTCTGATTGTGAATGCACCCAACCATGCAGGAATCCAAGCTGGAGTTGACAGGTTTTATCGAACCTGTAAGCTGCTCGGAATTAATATGAGCAAAAAGAAGTCTTACATAAACAGAACAGGTACCTTTGAATTCACGAGCTTTTTCTATCGTTATGGGTTTGTTGCCAATTTCAGCATGGAGCTTCCTAGTTTTGGGGTGTCTGGGGTCAATGAGTCTGCAGACATGAGTATTGGAGTCACTGTCATCAAAAACAATATGATAAACAATGACCTTGGCCCAGCAACTGCTCAAATGGCCCTTCAGTTATTTATCAAAGATTACAGGTACACGTATCGATGCCACAGAGGTGACACACAAATACAAACCCGGAGATCATTTGAGATAAAGAAACTATGGGACCAAACCCGCTCCAAAGCTGGGCTGTTGGTCTCTGATGGAGGCCCCAATTTATATAACATTAGAAATCTCCATATTCCTGAAGTCTGCTTGAAATGGGAGTTGATGGATGAGGATTACCAGGGGCGTTTATGCAACCCATTGAACCCATTTGTCAGTCATAAAGAGATTGAGTCAGTGAACAATGCAGTGATGATGCCGGCACATGGTCCAGCCAAAAATATGGAGTATGACGCTGTTGCAACAACACACTCCTGGGTTCCCAAAAGGAATCGATCCATTTTGAATACGAGCCAAAGGGGGATACTTGAGGATGAGCAAATGTATCAGAGGTGTTGCAATTTATTTGAAAAATTCTTCCCAAGTAGCTCATACAGAAGACCAGTTGGAATATCCAGTATGGTAGAGGCTATGGTTTCCAGAGCCCGAATTGATGCAAGAATTGATTTCGAATCTGGAAGGATAAAGAAAGAGGAATTCGCTGAGATCATGAAGACCTGTTCCACCATTGAAGACCTCAGACGGCAAAAATAGGGAATTTGGCTTGTCCTTCATGAAAAAATGCCTTGTTTCTACTAATAGGAGACCTGTGTG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_PB2', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCGAAAGCAGGTCAATTATATTCAATATGGAAAGAATAAAAGAGCTAAGGAATCTGATGTCACAATCTCGCACTCGCGAGATACTTACAAAAACTACTGTAGACCACATGGCCATAATCAAAAAATACACATCCGGAAGACAGGAGAAAAACCCATCACTTAGGATGAAATGGATGATGGCAATGAAATACCCAATTACAGCAGACAAAAGGATAACGGAAATGATTCCTGAAAGAAATGAGCAAGGACAGACATTATGGAGTAAAGTGAATGATGCCGGGTCAGACCGAGTGATGATATCACCCCTGGCTGTGACATGGTGGAATAGAAATGGACCAGTGGCAAGTACTATTCACTATCCAAAAATCTACAAAACTTACTTTGAAAAGGTTGAAAGGTTAAAACATGGAACCTTTGGCCCTGTACACTTTAGAAACCAAGTCAAAATACGCCGAAGAGTCGACATAAATCCTGGTCATGCAGACCTCAGCGCCAAGGAGGCACAGGATGTAATTATGGAAGTTGTTTTCCCTAATGAAGTGGGAGCCAGAATACTAACATCAGAATCGCAATTAACGATAACCAAAGAGAAAAAAGAAGAACTCCAAAATTGCAAAATTTCCCCTTTGATGGTTGCATACATGTTAGAGAGGGAACTTGTCCGCAAAACGAGATTTCTCCCGGTTGCTGGTGGAACAAGCAGTGTGTACATTGAAGTTTTGCATTTAACACAGGGGACATGCTGGGAACAGATGTACACTCCAGGTGGAGAGGTGAGGAATGATGATGTTGATCAAAGCCTAATTATTGCTGCTAGGAACATAGTGAGAAGAGCTGCAGTATCAGCAGATCCACTAGCATCTTTATTAGAAATGTGCCATAGCACACAGATTGGTGGAACAAGGATGGTGGATATTCTCAGGCAAAACCCAACAGAAGAACAAGCTGTGGATATATGCAAAGCAGCAATGGGGCTGAGAATCAGTTCATCCTTCAGTTTTGGCGGATTCACATTCAAGAGAACAAGTGGATCATCAGTCAAAAGGGAGGAAGAAATGCTCACGGGCAATCTGCAAACATTGAAGCTAACTGTGCATGAGGGATATGAAGAGTTCACAATGATTGGGAAAAGGGCAACAGCTATACTTAGAAAAGCAACCAGGAGATTGATTCAACTAATAGTGAGTGGACGAGACGAACAGTCGATAGTCGAAGCAATAGTTGTAGCAATGGTATTCTCACAAGAAGATTGCATGGTAAAAGCAGTTAGAGGTGATCTGAATTTCGTCAATAGAGCGAATCAGCGGTTGAATCCCATGCATCAACTTTTGAGACATTTTCAGAAGGATGCTAAAGTACTTTTCTTAAATTGGGGAATTGAACCTATCGACAATGTGATGGGAATGATTGGGATATTACCTGATATGACTCCAAGTACCGAGATGTCAATGAGAGGAGTGAGAGTCAGCAAAATGGGTGTAGATGAATACTCCAATGCTGAAAAGGTAGTGGTGAGCATTGACCGTTTTTTGAGAGTCCGGGACCAAAGAGGAAATGTACTACTGTCTCCAGAGGAAGTCAGTGAGACACAGGGAACAGAGAAACTGACAATAACTTACTCTTCATCAATGATGTGGGAGATTAATGGCCCTGAGTCAGTGTTGATCAATACCTATCAGTGGATCATCAGAAACTGGGAGACTATTAAAATTCAGTGGTCTCAGAACCCTACAATGCTATACAATAAAATGGAATTCGAGCCATTTCAGTCTCTAGTCCCTAAGGCCATTAGAGGCCAATACAGTGGGTTTGTTAGAACTCTATTCCAACAAATGAGGGATGTGCTTGGGACCTTTGACACAACTCAGATAATAAAACTTCTTCCCTTTGCAGCCGCTCCACCAAAGCAAAGTAGAATGCAATTCTCATCATTGACTGTGAATGTGAGAGGATCAGGAATGAGAATACTTGTAAGGGGTAATTCTCCAGTATTCAACTACAACAAGACCACTAAGAAACTCACAGTCCTCGGAAAGGATGCTGGCACTTTAACTGAAGACCCAGATGAAGGCACAGCTGGAGTGGAATCTGCTGTTTTAAGGGGATTCCTCATTCTAGGCAAAGAAGATAGAAGATATGGGCCAGCATTAAGCATCAATGAATTGAGCAACCTTGCGAAAGGAGAAAAAGCTAATGTGCTAATTGGGCAAGGGGACGTAGTGTTGGTGATGAAACGAAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAATTTCGAATAATTTAAAAACGACCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_NP', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGGTAGATAATCACTCACTGAGTGACATCAAAGTCATGGCGTCCCAAGGCACCAAACGGTCTTACGAACAGATGGAGACTGATGGGGAACGCCAGAATGCAACTGAAATCAGAGCATCCGTCGGAAGAATGATTGGTGGAATTGGGCGATTCTACATCCAAATGTGCACCGAGCTTAAACTCAATGATTATGAGGGACGACTGATCCAGAACAGCTTAACAATAGAGAGAATGGTGCTCTCTGCTTTTGATGAGAGGAGAAATAAATATCTGGAAGAACATCCCAGCGCGGGGAAAGATCCTAAGAAAACTGGAGGACCCGTATACAAGAGAGTAGATGGAAAGTGGGTGAGGGAACTCGTCCTCTATGACAAAGAAGAAATAAGGCGGATTTGGCGCCAAGCCAACAATGGTGATGATGCAACGGCTGGTTTGACTCACATTATGATCTGGCACTCTAATTTGAATGATACAACTTACCAGAGGACAAGAGCTCTTGTCCGCACCGGAATGGATCCCAGGATGTGCTCTTTGATGCAAGGTTCAACTCTCCCTAGAAGATCTGGAGCAGCAGGCGCTGCAGTCAAAGGAGTTGGGACAATGGTATTGGAATTGATCAGGATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAGAATGGAAGAAAAACAAGAATTGCTTATGAGAGAATGTGCAACATTCTCAAAGGAAAATTTCAAACAGCTGCACAAAAAGCAATGATGGATCAAGTGAGAGAAAGCCGGAACCCAGGAAATGCTGAGATCGAAGATCTCACTTTTTTGGCACGGTCTGCACTCATATTAAGAGGGTCAGTTGCTCATAAGTCTTGCCTGCCTGCCTGTGTGTATGGACCAGCCGTAGCCAGTGGGTACGACTTCGAAAAAGAGGGATACTCTTTGGTAGGGGTAGACCCTTTCAAACTGCTTCAAACCAGTCAGGTATACAGCCTAATCAGACCAAACGAGAATCCCGCACACAAGAGCCAGTTGGTGTGGATGGCATGCAATTCTGCTGCATTTGAAGATCTAAGAGTGTCAAGCTTCATCAGAGGGACAAAAGTACTTCCAAGGGGGAAGCTCTCCACTAGAGGAGTACAAATTGCTTCAAATGAAAACATGGATGCTATTGTATCAAGTACTCTTGAACTGAGAAGCAGATACTGGGCCATAAGAACCAGAAGTGGAGGGAACACTAATCAACAAAGGGCCTCTGCGGGCCAAATCAGCACACAACCTACGTTTTCTGTGCAGAGAAACCTCCCATTTGACAAAACAACCATCATGGCAGCATTCACTGGGAATACGGAGGGAAGAACATCAGACATGAGGGCAGAAATCATAAAGATGATGGAAAGTGCAAGACCAGAAGAAGTGTCCTTCCAGGGGCGGGGAGTCTTTGAGCTCTCGGACGAAAGGGCAACGAACCCGATCGTGCCCTCCTTTGACATGAGTAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTACGACAATTAAAGAAAAATACCCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_HA', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGGGAAAATAATAACAACCAAAATGAAAGCAAAACTACTGGTCCTGTTATGTACATTTACAGCTACATACGCAGACACAATATGTATAGGCTACCATGCCAACAACTCAACCGACACTGTTGACACAGTACTTGAGAAGAATGTGACAGTGACACACTCTGTCAACCTACTTGAGGACAGTCACAATGGAAAACTATGTCTACTAAAAGGAATAGCCCCACTACAATTGGGTAATTGCAGCGTTGCCGGATGGATCTTAGGAAACCCAGAATGCGAATTACTGATTTCCAAGGAATCATGGTCCTACATTGTAGAAACACCAAATCCCGAGAATGGAACATGTTACCCAGGGTATTTCGCCGACTATGAGGAACTGAGGGAGCAATTGAGTTCAGTATCTTCATTTGAGAGATTCGAAATATTCCCCAAAGGAAGCTCATGGCCCAACCACACCGTAACCGGAGTATCAGCATCATGCTCCCATAATGGGAAAAGCAGTTTTTACAGAAATTTGCTATGGCTGACGAGGAAGAATGGTTTGTACCCAAACCTGAGCATGTCCTATGTAAACAACAAAGAGAAAGAAGTCCTTGTGCTATGGGGTGTTCATCACCCACCTAACATAGGGGACCAAAGGGCCCTCTACCATACAGAAAATGCTTATGTCTCTGTAGTGTCTTCACATTATAGCAGAAGATTCACCCCAGAAATAGCCAAAAGACCCAAAGTAAGAGATCAGGAAGGAAGAATCAACTACTACTGGACTCTGCTGGAACCCGGGGACACAATAATATTTGAGGCAAATGGAAATCTAATAGCGCCATGGTATGCTTTCGCACTGAGTAGAGGCTTTGGATCAGGAATCATCACCTCAAATGCACCAATGGATGAATGTGATGCGAAGTGTCAAACACCTCAGGGAGCTATAAACAGTAGTCTTCCTTTCCAGAATGTACACCCAGTTACAATAGGAGAGTGTCCAAAGTATGTCAGGAGTGCAAAATTAAGGATGGTTACAGGACTAAGGAACATCCCATCCATTCAATCCAGAGGTTTGTTTGGAGCCATTGCCGGTTTCATTGAAGGGGGGTGGACTGGAATGGTAGATGGGTGGTATGGTTATCATCATCAGAATGAGCAAGGATCTGGCTATGCTGCAGATCAAAAAAGCACACAAAATGCCATTAACGGGATTACAAACAAGGTGAATTCTGTAATTGAGAAAATGAACACTCAATTCACAGCTGTGGGCAAAGAATTCAACAAATTAGAAAGAAGGATGGAAAACTTAAATAAAAAAGTTGATGATGGGTTTCTAGACATTTGGACATATAATGCAGAATTGTTGGTTCTACTGGAAAATGAAAGGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAATTAAAGAATAATGCCAAAGAAATAGGAAACGGGTGTTTTGAATTCTATCACAAGTGTAACAATGAATGCATGGAAAGTGTGAAAAATGGAACTTATGACTATCCAAAATATTCCGAAGAATCAAAGTTAAACAGGGAGAAAATTGATGGAGTAAAATTGGAATCAATGGGAGTCTATCAGATTCTGGCGATCTACTCAACTGTCGCCAGTTCCCTGGTTCTTTTGGTCTCCCTGGGGGCAATCAGTTTCTGGATGTGTTCCAATGGGTCTTTGCAGTGTAGAATATGCATCTGAGACCAGAATTTCAGAAATATAAGAAAAAACACCCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVsmE041', 'Virus', 'SIVsmE041', 'RNA', 'SIV', 'CTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGCTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACAAACCACGACGGAGTGCTCCTATAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAAAAGAGTCATAGGACTGAGTTCCCTACTTTTGAGGAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAAAAAGCAGATGAATTAGAAAAAATTAGGTTACGGCCCGGCGGAAAGAAAAAGTACATGCTGAAGCATGTAGTATGGGCAGCAAACGAATTGGACAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGTTGTCAAAAAATTCTTTCAGTCTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTTTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTAGAAACAGGAACAGCAGACAAAATGCCAGTAACAAGTAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAAGTAGGTGGCAATTATACCCACCTACCCTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTGATAGAAGAGAAAAAATTTGGGGCAGAAGTAGTGCCAGGATTCCAAGCACTATCAGAAGGCTGCACTCCCTATGACATCAATCAGATGCTAAATTGTGTAGGGGAACATCAATCAGCCATGCAAATTATTAGAGAAATTATAAATGAAGAAGCTGCTGATTGGGATTTACAACACCCACAGCCAGGTCCAATACCAGCAGGACAACTTAGAGATCCGAGAGGATCAGACATTGCAGGAACTACTAGCACAGTAGAAGAACAAATTCAATGGATGTATAGGCAGCAAAACCCTATACCAGTAGGTAACATTTACAGAAGGTGGATCCAATTAGGGCTGCAAAAATGTGTAAGGATGTATAATCCAACAAACATTTTAGATGTGAAACAAGGACCAAAAGAGCCATTTCAAAGCTATGTAGATAGATTCTACAAGAGTCTAAGAGCAGAACAAACAGACCCAGCAGTGAAAAATTGGATGACTCAAACACTGCTGATTCAGAATGCTAACCCGGATTGCAAATTGGTGCTCAAGGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGAGTAGGAGGACCAGGACAAAAAGCTAGACTAATGGCAGAAGCCTTGAAAGAGGCGCTGACGCCAGGGCAACTCCCATTTGCAGCAGTCCAACAGAGAGGACAAAGAAAGACAATTAAATGTTGGAATTGTGGAAAGGAGGGACACTCTGCGAGACAATGCAGAGCCCCTAGAAGACAGGGATGCTGGAAGTGTGGAAAAACAGGCCATGTTATGGCCAAATGCCCCGAGAGACAGGCGGGTTTTTTAGGGCTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATACCTCAGGGGTTGACACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAGGAACTACATGAAGATGGGCAGAAGGCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTGACGGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTTACTGCCTACATTGAAGAACAGCCCGTAGAAGTATTATTAGATACAGGGGCTGATGATTCAATTGTAGCAGGGATAGAATTGGGTCCAAATTATACCCCTAAAATAGTAGGAGGAATAGGAGGTTTCATTAACACCAAGGAATATAAAGATGTAAAAATAAAAGTCTTAGGCAAGGTAATTAAGGGAACAATTATGACAGGAGATACCCCAATTAACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAAATCTCCCCATAGCTAAGGTGGAACCTATCAAAGTAACACTAAAACCAGGAAAAGATGGACCAAAATTAAGACAGTGGCCACTATCAAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCATATAACACCCCCACATTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGGATGCTAATAGACTTTAGAGAATTAAACAAGGTTACTCAAGATTTTACAGAAGTACAGTTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGAAGGATCACAGTATTGGATGTAGGTGATGCATATTTTTCCATACCTTTAGATGAGGAATTCAGGCAATACACTGCCTTTACTTTACCATCAGTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAAGGATCACCAGCTATTTTTCAGCATACTATGAGAAATGTCTTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACCCTGATCCAATACATGGATGACATCCTAATAGCTAGTGATAGAACAGATTTAGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTAAACAGTATGGGATTTTCCACCCCAGAAGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAAAAAATAGAGTTGCCACAAAAAGAAACCTGGACAGTAAATGATATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACACCTTTGCAGATTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAACAAGATAATTCTCAGTCAAGAACAAGAAGGGTGTTATTATCAAGAGGGAAAGCCACTGGAGGCAACAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAAGACAAAATACTAAAAGTAGGCAAATTTGCAAAGATTAAGAATACACATACAAATGGAGTCAGATTATTAGCACATGTAGTACAGAAAATAGGAAAAGAAGCAATAGTAATTTGGGGACAGGTGCCAAAATTTCATTTGCCAGTAGAGAGAGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACCAGAATGGGACTTTGTATCAACACCTCCCTTAGTCAGATTAGTCTTCAACCTAGTAAAAGAGCCTATACAGGGAGCAGAAACATTTTATGTAGATGGATCCTGTAACAGACAGTCAAAAGAAGGAAAGGCAGGCTATGTGACAGACAGAGGCAGAGACAGAACAAAACCGCTGGAACAGACTACCAATCAACAAGCAGAGTTGGAAGCCTTCCATCTAGCCTTAGCAGATTCAGGACCAAAAGCCAATATAATAGTAGACTCCCAATATGTTATGGGCATAATAGCGGGTCAACCCACTGAATCAGAAAGTAGATTAGTAAATCAGATAATAGAGGAAATGATTAAAAAGGAAGCAATTTATGTAGCGTGGGTACCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTAGATCATCTGGTAAGTCAAGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCGCAAGAAGAGCATGAGAAGTACCATAGCAATGTAAAAGAATTAGTATTCAAATTTGGATTACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAAATGTCACCAGAAAGGAGAGGCCATACATGGACAAGTAAATGCAGAACTAGGGACTTGGCAAATGGACTGTACACACCTAGAGGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTCATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGCTAAAATTAGCCAGCAGATGGCCCATCACACATCTGCATACTGATAATGGTGCCAACTTCACATCGCAAGAAGTGAAAATGGTTGCTTGGTGGGCAGGGATTGAACAGACCTTTGGGGTGCCTTATAATCCACAGAGCCAGGGAGTGGTGGAAGCAATGAACCATCATCTAAAAACCCAGATAGATAGAATTAGGGAACAGGCAAATTCAATAGAGACTATAGTACTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAAATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGAGTTGGATAGCGGTTCCCACTTGGAGGATACCGGGGAGGCTAGAGAAGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAAGACCTACAGAAGGCTTGTTATGTACCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGGGTGATCTTCCCATTAAGGGATGAGTCTCATTTGGAAGTACAAGGATATTGGAATTTGACACCAGAGAAAGGATGGCTCAGTACTTATGCAGTGAGAATAACCTGGTACTCCAGAAATTTCTGGACAGATGTAACACCAGATTATGCAGACACTTTACTGCATGGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACGAAGGGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAGAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTGAGTCATGTCAGATCCCAGGGAGAGGATCCCACCTGGAAACAGTGGAGAGGAAACAGTAGGCGAGGCCTTCGACTGGCTAGAAAGAACAGTAGAAGAAATAAACAGGGCAGCAGTGAATCATTTGCCGAGGGAGTTAATTTTCCAGGTTTGGCGAAGGTCCTGGGAATACTGGCATGATGAAATAGGGATGTCAGCCAGCTACACAAAATATAGATACTTGTGCTTGATACAAAAAGCTTTGTTTATGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGGAGAGCATGGGGCAGGGGGATGGAGACCAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGACAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCGTGGGATGAATGGGTAGTAGAAGTTCTGGAGGAAGTAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATCTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAGCTCATTAAAATCCTCCAGAGAGCACTCTTCATCCATTTCAGAGGTGGATGCAACCACTCCAGAATCGGCCACTCTGGAGGAGGAAATCCTCTCTCAACTATACCGCCCTCTAGAGGCGTGCTATAACAAGTGCTACTGTAAGAAGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGAATATGCTATGAGCAGCAACGAAGAAGAACTCCGAAGAAGACTAAGGCTAATACATTTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTATTAAGTGCTTTAGGGATTTCTTGTGTTCAATATGTAACAGTGTTCTATGGTGTACCAGCATGGAAGAATGCGACAATTCCCCTCTTCTGTGCAACCAAGAATAGGGATACTTGGGGAACAACACAATGCTTGCCAGATAATGATGATTACTCAGAATTGGCAATTAATGTCACAGAGGCTTTTGATGCTTGGGATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTCAAACATCCATTAAGCCCTGTGTAAAACTTACCCCACTATGTATAGCAATGAGGTGTAATAAAACTGAAACAGATAGATGGGGCTTAACAGGAAAACCAACAACAACAGCATCAACAACAACAAAAACAACATCAAAACCATCAGTAATAACAGCAAAGGTTATAAATGAAGGTGATCCATGCATAAAAAATAATAGTTGTGCAGGCTTGGAACAAGAACCCATGATAGGTTGTAAATTTAACATGACAGGGTTAAGAAAGGACAAACAGAGAGAATATAATGAAACATGGTATTCAAGAGATATAGTTTGTGAACAAAATAGCAATGAACATGAAACTGCCAGTAAATGTTATATGAACCATTGTAACACTAGTGTTATTCGAGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATATTGTGCTCCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGAACCTAACTGTACTAAGGTAGTAGTTTCTTCATGCACAAGAATGATGGAAACACAAACCTCTACTTGGTTTGGTTTCAATGGTACTAGAGCAGAAAATAGAACATACATTTATTGGCATGGTAGAAGCAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATAAGATGTAGGAGACCAGGAAATAAGACAGTCTTACCAGTCACCATTATGTCAGGGTTGGTCTTCCATTCGCAACCCATAAATGAGAGACCAAAACAGGCCTGGTGCTGGTTTGGAGGAAACTGGAAAGGGGCTATCCGAGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATAATACTGAGAAGATTAATCTAACAGCTCCAGCAGGAGGAGATCCGGAAGTTACTTTCATGTGGACAAATTGTCGAGGAGAATTCTTATATTGCAAAATGAATTGGTTTCTTAATTGGGTAGATGAGACAAGTGGTTTTAGATGGAATAAACAAAACCCGAAGGAGAAGAAAAGGAGGAATTATGTGCCATGTCATATTAGACAGGTAATTAATACGTGGCACAGGGTAGGCAAAAATGTGTATTTGCCTCCTAGGGAAGGAGACCTGACATGTAATTCCACTGTAACTAGCCTCATAGCAGAAATAGATTGGATCGATAAAAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAGCTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGAAATTACTCCAATTGGCTTGGCCCCCACAAGTGTAAGAAGGTACACCACAACCGGTGCCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCCGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACTAAGAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTAAAGGATCAGGCGCAGCTAAATTCATGGGGATGTGCTTTTAGGCAGGTCTGCCACACTACTGTACCATGGCCAAATGACACATTGGTACCTAATTGGAACAATATGACTTGGCAAGAGTGGGAAAGACAGGTTGACTTCCTAGAGGCAAATATAACTCAATTATTGGAAGAAGCACAAATTCAGCAAGAAAAGAATATGTATGAGTTGCAAAAATTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAAGATATATACAATATGGTGTACTTATAGTTCTAGGAGTAATAGGATTAAGAATAGTGATATATGTAGTGCAGATGTTAGCTAGGTTAAGACAAGGTTATAGGCCAGTGTTCTCTTCCCCTCCCGTTTATGTTCAGCAGATCCCTATCCAGAAGGGCCAGGAACCGCCAACCAAAGAAGGAGAAGAAGGAGACGGTGGAGACAGAGGTGGCAACAGATCTTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAGCTAATACGCCTCTTGAGTTGGCTATTCAACAGTTGCAGAGATTGGCTATTGAGGAGCTACCAGATCCTCCAGCCAGTGCTCCAGAGCCTCTCAAGGATACTGCAGAGAGTCCGTGAAGTCATCAGAGTTGAGATAACCTACCTACAGTATGGGTGGCGTTACTTCCAAGAAGCAGCGCAAGCATGGTGGAAATTTGCGCGAGAGACTCTTGCAAGCGCGTGGGGAGACTTATGGGAGACTCTGGGACGGGTTGGAAGGAGATTACTCGCAATCCCAAGACGGATCAGGCAGGGGCTTGAGCTCACTCTCTTGTGAGCCTCAGAAATATTGTGAGGGTCAATTTATGAATACCCCTTGGAGAAACCCAAGAGCAGAAGGAGCAAAATTAGATTATAGACAACAAAACATGGATGATGTGGATGATGATGATGATGACTTAGTAGGTTTTCCAGTGACCCCAAAAGTCCCCTTAAGGACCATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGATAGGAGACATAAAATATTGAATCTGTACTTAGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACAGCAGGGCCAGGAATCAGATACCCTATGTGTTTTGGATGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCTCAGGAGGACGAGGCACATTGCTTGATGCATCCAGCACAGACCTCTCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAGTTAGCTTATAACTATAAGGCATTTGTTAAGCACCCAGAAGAGTTTGGTAGTAGCTCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCCTTTTAAAAATGGCTGACAAGAAGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAAGGGGATGTTATGGGGAGGTACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTCTATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac239deltaNef', 'Virus', 'SIVmac239deltaNef', 'RNA', 'SIV', 'GCATGCACATTTTAAAGGCTTTTGCTAAATATAGCCAAAAGTCCTTCTACAAATTTTCTAAGAGTTCTGATTCAAAGCAGTAACAGGCCTTGTCTCATCATGAACTTTGGCATTTCATCTACAGCTAAGTTTATATCATAAATAGTTCTTTACAGGCAGCACCAACTTATACCCTTATAGCATACTTTACTGTGTGAAAATTGCATCTTTCATTAAGCTTACTGTAAATTTACTGGCTGTCTTCCTTGCAGGTTTCTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCTATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTTTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAAGTGGCCCTTAATGTTACAGAAAGCTTTGATGCCTGGAATAATACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTGGTACTCTGCAGATTTGGTATGTGAACAAGGGAATAACACTGGTAATGAAAGTAGATGTTACATGAACCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAACATTATTGGGATGCTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTGACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATACAGCTAACCAGAAGCCAAAGGAACAGCATAAAAGGAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAAAGTGGAACAATGAGACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAAGAAAATATAACAGCCCTCCTAGAGGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAAGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGATCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACAGAGGATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVsmE041-1', 'Virus', 'SIVsmE041-1', 'RNA', 'SIV', 'ACAGGGACTTGAAGGAGAGTGAGAGCTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACAAACCACGACGGAGTGCTCCTATAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAAAAGAGTCATAGGACTGAGTTCCCTACTTTTGAGGAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAAAARGCAGATGAATTAGAAAAAATTAGGTTACGGCCCGGCGGAARGAAAAAGTACATGCTGAAGCATGTAGTRTGGGCAGCAAACGAATTGGACAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGTTGTCAAAAAATTCTTTCAGTCTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTTTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTRGAAACAGGAACAGCAGACAAAATGCCAGYAACAAGTAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAAGTAGGTGGCAATTATACCCACCTACCYTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTGATAGAAGAGAAAAAATTTGGGGCAGAAGTAGTGCCAGGATTCCAAGCACTATCAGAAGGCTGCACTCCCTATGACATCAATCAGATGYTAAATTGTGTRGGGGAACATCAATCAGCCATGCAAATTATTAGAGAAATTATAAATGAAGAAGCTGCTGATTGGGATTTACAACACCCRCAGCCAGGYCCAATACCAGCAGGACAACTTAGAGATCCGAGAGGATCAGACATTGCAGGAACTACTAGCACAGTAGAAGAACAAATTCAATGGATGTATAGGCAGCAAAACCCTATACCAGTAGGTAACATTTACAGAAGGTGGATCCAATTAGGGCTGCAAAAATGTGTAAGGATGTATAATCCAACAAACATTTTAGATGTGAAACAAGGACCAAAAGAGCCATTTCAAAGCTATGTAGATAGRTTCTACAAGAGTYTAAGAGCAGAACAAACAGACCCAGCAGTGAAAAATTGGATGACTCAAACACTGCTGATTCAGAATGCTAACCCGGATTGCAAATTGGTGCTCAARGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGAGTAGGAGGACCAGGACAAAAAGCTAGACTAATGGCAGAAGCCTTGAARGAGGCGCTGACGCCAGGGCAACTCCCATTTGCAGCAGTCCAACAGAGAGGACAAAGAAAGACAATTAAATGYTGGAATTGTGGAAAGGAGGGACACTCTGCGAGACARTGCAGAGCCCCTAGAAGACAGGGMTGCTGGAAGTGTGGAAAAACAGGCCATGTTATGGCCAAATGCCCCGARAGACAGGCGGGTTTTTTAGGGCTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATACCTCAGGGGTTGACACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAGGAACTAYATGAAGATGGGCAGAAGGCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTGACGGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTTACTGCCYACATTGAAGAACAGCCCRTAGAAGTATTATTAGATACAGGGGCTGATGATTCAATYGTAGCAGGGATAGAATTGGGTCCAAATTATACCCCTAAAATAGTAGGAGGRATAGGAGGTTTCATTAACACCAAGGAATATAAAGATGTAAAAATAAAAGTCTTAGGCAARGTRATTAAGGGAACAATTATGACAGGAGATACCCCAATTAACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAAATCTCCCCATAGCTAAGGTRGAACCTATCAAAGTAACACTAAAACCAGGAAAAGATGGACCAAAATTAAGACAGTGGCCRCTATCAAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCATATAACACCCCCACATTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGGATGCTAATAGACTTTAGAGAATTAAACAAGGTTACTCAAGATTTTACAGAAGTACAGTTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGAAGGATCACAGTATTGGATGTAGGTGATGCATATTTTTCCATACCTTTAGATGAGGAATTCAGGCAATACACTGCCTTTACTTTACCATCAGTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAAGGATCACCAGCTATTTTTCAGCATACTATGAGAAATGTCTTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACCCTGATCCAATAYATGGATGACATCCTAATAGCTAGTGATAGAACAGAYTTAGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTAAACAGTATGGGATTTTCCACCCCAGAAGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAAAAAATAGAGTTGCCACARARAGAAACCTGGACARTAAATGATATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACACCTTTGCAGATTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGARAACAAGATAATTCTCAGTCAAGAACAAGAAGGGTGTTAYTATCAAGAGGGAAARCCACTGGAGGCAACAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAAGACAARATACTAAAAGTAGGCAAATTTGCAAAGATTAAGAATACACATACAAATGGAGTCAGATTATTAGCACATGTAGTACAGAAAATAGGAAAAGAAGCAATAGTAATTTGGGGACAGGTGCCAAAATTTCATYTGCCAGTAGAGAGAGAAATYTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACCAGAATGGGACTTTGTATCAACACCTCCCTTAGTCAGATTAGTCTTCAACCTAGTAAAAGAGCCTATACAGGGAGCAGAAACATTTTATGTAGATGGATCCTGTAACAGACAGTCAAAAGAAGGAAAGGCAGGCTATGTGACAGACAGAGGCAGAGACAGAACAAAACCGCTGGAACAGACTACCAATCAACAAGCAGAGYTRGAAGCCTTCCATCTAGCCTTAGCAGATTCAGGACCAAAAGCCAATATAATAGTAGACTCCCAATATGTTATGGGCATAATAGCGGGTCAACCCACTGAATCAGAAAGTAGATTAGTAAATCAGATAATAGAGGAAATGATTAAAAAGGAAGCAATTTATGTAGCGTGGGTACCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTRGATCATCTGGTRAGTCAAGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCGCAAGAAGAGCATGAGAAGTACCATAGCAATGTAAAAGAATTAGTATTCAAATTTGGATTACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAAATGTCACCAGAAAGGAGARGCCATACATGGACAAGTAAATGCAGAACTAGGGACTTGGCAAATGGACTGTACACACCTAGAGGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTCATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGCTAAAATTAGCCAGCAGATGGCCCATCACACATCTGCAYACTGATAATGGTGCCAACTTCACATCGCAAGAAGTGAAAATGGTTGCTTGGTGGGCAGGGATTGAACAGACCTTTGGGGTGCCTTATAATCCACAGAGCCAGGGAGTRGTGGAAGCAATGAACCATCATCTAAAAACCCAGATAGATAGAATYAGGGAACAGGCAAATTCAATAGARACTATAGTACTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAAATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGARTTGGATAGCGGTTCCCACTTGGAGGATACCGGGGAGGCTAGAGAAGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAAGACCTACAGAAGGCTTGTTATGTACCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGGGTRATCTTCCCATTAAGGGATGARTCTCATTTGGAAGTACAAGGATATTGGAATTTGACACCAGAGAAAGGATGGCTCAGTACTTATGCAGTGAGAATAACCTGGTACTCCAGRAATTTCTGGACAGATGTAACACCAGATTATGCAGACACTTTACTGCATGGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACGAAGGGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAGAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTGAGTCATGTCAGATCCCAGGGAGAGGRTCCCACCTGGAAACAGTGGAGAGGAAACRGTAGGCGAGGCCTTCGACTGGCTRGAAAGAACAGTAGAAGAAATAAACAGGGCAGCAGTGAATCATTTGCCGAGGGAGTTAATTTTCCAGGTTTGGCGAAGGTCCTGGGAATACTGGCATGATGAAATAGGGATGTCAGCCAGCTACACAAAATAYAGATACTTGTGCTTGATACAAAAAGCTTTGTTTATGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGGAGAGCATGGGGCAGGGGGATGGAGACCAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGACAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCGTGGGATGAATGGGTAGTAGAAGTTCTGGAGGAAGTAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATCTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAGCTCATTARAATCCTCCAGAGAGCACTCTTCATCCATTTCAGAGGTGGATGCAACCACTCCAGAATCGGCCACTCTGGAGGAGGAAATCCTCTCTCAACTATACCGCCCTCTAGAGGCGTGCTATAACAAGTGCTACTGTAAGAAGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGAATATGCTATGAGCAGCAACGAAGAAGAACTCCGAAGAAGACTAAGGCTAATACATTTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTATTAAGTGCTTTAGGGATTTCTTGTGTTCAATATGTRACAGTGTTCTATGGTRTACCAGCATGGAAGAATGCGACARTTCCCCTCTTCTGTGCAACYRAGAATAGGGAYACTTGGGGRACAACACAATGCTTGCCAGATAATGATGATTACTCAGAATTGGCAATTAATGTCACAGAGGCTTTTGATGCTTGGGATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTCAAACATCCATTAAGCCCTGTGTAAAACTTACCCCACTATGTATAGCAATGAGGTGTAATAAAACTGAAACAGATAGATGGGGCTTAACAGGAAAACCAACAACAACAGCATCAACAACAACAAAAACAACATCAAAACCATCAGTAATAACAGCAAARGTTATAAATGAAGGTGATCCATGCATAAAAAATAATAGTTGTGCAGGCTTGGAACARGARCCCATGATAGGTTGTAAATTTAACATGACAGGGTTAAGAAAGGACAAACAGAGAGAATATAATGAAACATGGTATTCAAGAGATATAGTTTGTGAACAAAATAGCAATGAAMATGAAACTGCCAGTAAATGTTATATGAACCATTGTAACACTAGTGTTATTCGAGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATATTGTGCTCCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGAACCTAACTGTACTAAGGTAGTAGTTTCTTCATGCACAAGAATGATGGAAACACAAACCTCTACTTGGTTTGGTTTCAATGGTACTAGAGCAGAAAATAGAACATACATTTATTGGCATGGTAGAAGCAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATRAGATGTAGGAGACCAGGAAATAAGACAGTCTTACCAGTCACCATTATGTCAGGGTTGGTCTTCCATTCGCAACCCATAAATGAGAGRCCAAAACAGGCCTGGTGCTGGTTTGGAGGAAACTGGAAAGGRGCYATCCGAGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATAATACTGAGAAGATTAATCTRACAGCTCCAGCAGGAGGAGATCCGGAAGTTACTTTCATGTGGACAAATTGTCGAGGAGAATTCTTATATTGCAAAATGAATTGGTTTCTYAATTGGGTAGATGAGACAARKGGTTTTAGATGGAATAADCAAAACCCGAAGGAGAAGAAAAGGAGGAATTATGTGCCATGTCATATTAGACAGGTAATYAAYACGTGGCACAGRGTAGGCAAAAATGTGTATTTGCCTCCTAGGGAAGGAGACCTGACATGTAATTCCACTGTAACTAGCCTCATAGCAGAAATAGATTGGATCGATAAAAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAGCTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGARATTACTCCAATTGGCTTGGCCCCCACAAGTGTAAGAAGGTACACCACAACCGGTGCCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCCGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACTAARAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTAAAGGATCAGGCRCATCTAAATTCATGGGGATGTGCTTTTAGGCAGGTCTGCCACACTACTGTACCATGGCCAAATGACACATTGRTGCCTAATTGGGAYAATATGACTTGGCAAGAGTGGGAAAGACAGGTTGACTTCCTAGAGGCAAAYATAACTCAATTACTRGAAGAAGCACAAATTCAGCAAGAAAAGAAYATGTATGAGTTGCAAAAATTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAARATATATACAATATGGTGTACTTATAGTTCTAGGAGTAATAGGATTAAGAATAGTGATATATGTAGTRCARATGTTAGCTAGGTTAAGACAAGGTTATAGGCCAGTGTTCTCTTCCCCTCCCGTTTATGTTCAGCAGATCCCTATCCAGAAGGGCCAGGAACCGCCAACCAAAGAAGGAGAAGAAGGAGACGGTGGAGACAGAGGTGGCAACAGATCTTGGCCTTGGCAGATAGAATAYATTCATTTCCTGATCCGCCAGCTAATACGCCTCTTGAGTTGGCTRTTCAACAGTTGCAGAGWTTGGCTATTGAGGAGCTRCCAGATCCTCCAGCCAGTGCTCCAGAGCCTCTCAAGGATACTGCAGRGAGTCCGTGAAGTCATCAGAGTTGAGATAACCTACCTACAGTATGGGTGGCGTTACTTCCAAGAAGCAGCGCAAGCRTGGTGGAAATTTGCGCGAGAGACTCTTGCAAGCGCGTGGGGAGACTTATGGGAGACTCTGGGACGGGTTGGAAGGAGATTACTCGCAATCCCAAGACGKATCAGGCAGGGGCTTGARCTCACTCTCTTGTGAGCCTCAGAAATATTGTGARGGTCAATTTATGAATACCCCTTGGAGAAACCCAAGAGCAGAAGGAGCAAAATTAGATTATAGACAACAAAACATGGATGATGTGGATGATGATGATRRTGACYTAGTAGGTTTTCCAGTGACCCCAARAGTCCCCTTRAGGACYATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGATAGGAGACATAAAATATTGAATCTGTACYTAGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACAGCAGGGCCAGGAATCAGATACCCTATGTGTTTTGGATGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCTCAGGAGGACGANNCACATTGCTTGATGCATCCAGCACAGACCTCTCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGARTTAGCTTATAACTATAAGGCATTTGTTAAGCACCCAGAAGAGTTTGGTAGTAGYTCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCCTTTTAAAAATGGCTGACAAGAAGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAAGGGGATGTTATGGGGAGGTACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTC'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac239cy0163', 'Virus', 'SIVmac239cy0163', 'RNA', 'SIV', 'NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCGAAAAATACTTTCGGTCTTAGCTCCATTAATGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGATCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAGCTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGAACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGATCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGACAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGATACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGAATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTGATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATGGCACTCTATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTTTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAAATGGCCCTTAATGTTACAGAAAGCTTTGATGCCTGGAATAATACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTGGTACTCTGCAGATTTGGTATGTGAACAAGGGAATAACACTGGTAATGAAAGTAGATGTTACATGAACCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAACATTATTGGGATGCTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAATTGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTGACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATACAGCTAACCAGACGTCAAAGGAACAGCATAAAAGAAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAGAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAAATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAGAGTGGAACAATGAGACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAGGAAAATATAACAGCCCTCCTAGAGGAGGCACAAATTCAACAAGAGAGGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAGGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGGTCCGTCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGGTCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACAGAGGATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGGAAGATGATGACTTGGTAGGGGTATCAGTGAGGTCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVsmE543', 'Virus', 'SIVsmE543', 'RNA', 'SIV', 'TGGAAGGGATTTATTACAATGAGAAAAGACATAGAATATTAGATATGTACATGGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACATTAGGGCCAGGAACTAGATACCCTATGTACTTTGGGTGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCCCAGGAAGACGAGACACATTGCCTGGTGCATCCAGCACAGACTCATCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAATTGGCTTATAGCTATAAGGCATTTATTAAGTACCCAGAAGAGTTTGGTAGTAAGTCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCATTTATAAAATGGCTGACAAGAGGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAGGGACTTTCCACAAGGGGCTGTCATGGGGAGGTACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTCTCTGTATAAATACAACTGCATTTCGCTCTGTAGTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTAGAAGTAAGCAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATCTCGGTACTCGACACATAAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAGGCAGGAAAATCCCTAGCAGGTTGGCGCCCGAACAGGGACTTGAAGGAGGTGAGAGCTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACAAACCACGACGGAGAGCTCCTAGAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCAGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAAAAAGTCATAGGACTGAGTTCCCTACTTTTGAGGAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGTTACGGCCCAACGGAAAGAAAAAGTATATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTGGATAGATTTGGATTAGCAGAAAGCCTGTTGGATAACAAAGAAGGTTGTCAAAAAATTCTTTCGGTTTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTTTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTGGAAACAGGAACAGCAGACAAAATGCCAGCAACAAGCAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAAGTAGGTGGCAATTATGTCCACCTACCCTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTGGTAGAAGAGAAAAAATTTGGGGCAGAGGTAGTGCCAGGATTTCAAGCGCTATCAGAAGGCTGCACTCCCTATGACATCAATCAAATGCTAAATTGTGTAGGAGAACATCAGGCAGCCATGCAAATTATTAGAGAGATTATAAATGAAGAAGCTGCCGATTGGGATTTACAACACCCGCAGCCAGGTCCACTACCAGCAGGGCAACTTAGAGAGCCAAGAGGATCAGACATTGCAGGAACTACTAGTACAGTAGAGGAACAAATCCAATGGATGTACAGGCAACAAAACCCCATACCAGTAGGCAACATTTATAGGAGGTGGATCCAATTAGGGCTGCAGAAATGTGTAAGAATGTATAACCCAACAAACATTTTAGATGTGAAACAAGGACCAAAAGAGCCATTTCAAAGCTACGTAGATAGATTCTACAAAAGTCTAAGAGCAGAGCAAACAGACCCGGCAGTAAAGAATTGGATGACCCAAACACTGCTGATTCAAAATGCTAACCCAGATTGTAAATTGGTGCTCAAGGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGAATAGGAGGGCCAGGACAAAAAGCTAGATTAATGGCAGAAGCATTGAAAGAGGCACTGAGACCAGACCAACTCCCATTTGCAGCAGTCCAACAGAAAGGACAAAGGAGGACAATCAAGTGTTGGAATTGTGGAAAGGAGGGACACTCTGCAAGACAATGCAGGGCCCCTAGAAGACAGGGCTGCTGGGGGTGCGGAAAAACGGGTCATGTTATGGCCAAATGCCCTGAAAGACAGGCGGGTTTTTTAGGGTTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATGCCTCAGGGGCTGACACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAAGAATTACATGAAGATGGGCAGAAAGCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTCACTGCCTACATTGAAGAACAGCCCGTAGAAGTATTATTAGATACAGGGGCTGATGATTCAATTGTAACAGGGATAGAATTGGGTCCAAATTATACCCCTAAAATAGTAGGAGGAATAGGAGGCTTCATTAATACCAAAGAATATAAAGATGTGAAAATAAAAGTCTTAGGCAAGGTAATTAAGGGAACAATTATGACGGGAGATACCCCAATTAATATTTTTGGCAGAAATTTGCTAACAGCTATGGGCATGTCTTTAAATTTCCCCATAGCTAAGGTGGAGCCTATAAAAGTAACACTAAAACCAGGGAAAGAAGGACCAAAATTGAGACAGTGGCCGCTATCAAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCGTATAACACCCCCACTTTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGAATGCTAATAGATTTTAGAGAATTAAATAAGGTCACTCAAGACTTTACAGAAGTACAGTTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGGAGGATCACAGTATTGGATGTAGGTGATGCATATTTCTCCATTCCTCTAGATGAAGAATTCAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAGGGGTCACCAGCTATTTTTCAGTATACTATGAGAAATGTATTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACCCTGATCCAATACATGGATGACATCTTAATAGCTAGTGATAGAACAGATTTAGAGCATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTGAACGGCATAGGATTCTCCACCCCAGAAGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAGAAAATAGAGTTGCCACAAAGAGAGACCTGGACAGTAAATGACATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACATCTTTGCAGACTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAACAAGATAATTCTCAGTCAAGAACAAGAAGGATGTTACTACCAAGAGGGAAAACCAATAGAGGCAACAGTAATAAAGAGTCAGGATAATCAGTGGTCATATAAAATTCACCAAGAAGACAAAGTACTAAAAGTGGGCAAATTTGCAAAGGTTAAAAATACACATACAAATGGAGTCAGATTACTAGCACATGTAGTGCAGAAAATAGGAAAGGAGGCACTAGTAATTTGGGGAGAGGTGCCAAAATTCCATTTGCCAGTAGAAAGAGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACCAGATTGGGACTTTGTGTCAACACCTCCCTTAGTCAGATTAGTCTTCAACCTAGTAAAAGAGCCTATACAGGGAGCAGAAACATTTTACGTAGATGGATCCTGTAATAGGCAGTCAAGAGAAGGAAAAGCAGGCTATGTGACGGATAGGGGCAGAGACAAAGCAAAACTTTTAGAACAGACTACCAACCAACAAGCAGAGTTGGAAGCCTTCTATCTAGCCTTAGCAGATTCGGGACCAAAAGCAAATATTATAGTAGATTCCCAATATGTTATGGGCATAGTAGCAGGTCAGCCCACTGAATCAGAAAGTAGGTTAGTAAACCAGATAATAGAAGAGATGATTAAAAAGGAAGCAATTTATGTAGCATGGGTACCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTAGATCACCTGGTTAGCCAGGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCACAAGAAGAGCATGAAAAGTACCATAGCAATGTAAAAGAATTGGTATTCAAATTTGGTATACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAGATGCCACCAGAAAGGAGAAGCCATACATGGGCAAGTAAATGCAGAACTAGGGACTTGGCAAATGGACTGTACGCACCTAGAAGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTTATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGTTAAAGCTAGCTGGCAGATGGCCCATCACACATCTGCATACTGATAATGGTGCCAATTTCACATCACAAGAAGTGAAAATGGTTGCCTGGTGGGCAGGGATTGAACAGACCTTTGGAGTGCCTTATAATCCACAGAGCCAAGGAGTAGTGGAAGCAATGAACCATCATTTAAAAACCCAGATAGATAGAATTAGAGAACAAGCAAACTCAGTAGAGACTATAGTACTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTGTGGAGAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAGATTAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGAATTGGATAGTGGTTCCCACTTGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAGGACCTACAGATGGCTTGCTATGTGCCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGAGTAATTTTCCCATTAAGGGATAAGACTCATTTGGAAGTACAAGGATATTGGAATTTGACACCAGAAAAAGGATGGCTCAGTACTCATGCAGTAAGAATAACCTGGTACTCCAGAAATTTCTGGACAGATGTAACACCAGATTGTGCAGACACTTTACTGCATAGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACAAAGAGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAAAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTAAGTCATGTCAGATCCCAGAGAGAGGATCCCACCTGGAAACAGTGGAGAGGAAACAATAGAAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAAGGAATAAACAGGGCAGCAGTAAATCACCTGCCGAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCCTGGGAATACTGGCATGATGAAATGGGAATGTCAGAAAGCTACACAAAATATAGATACTTGTGCTTGATACAGAAAGCTCTGTTTATGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGAAGGGCATGGGGCAGGGGGATGGAGAACAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGGCAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCATGGGATGAATGGGTAGTGGAAGTTCTGGAGGAAATAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATTTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAACTCATTAGAATCCTACAGAGAGCACTCTTCATCCATTTCAGAAGTGGATGTGCCCACTCCAGAATCGGCCAATCTAGAGGAGGAAATCCTCTCTCAACTATACCGCCCTCTAGAGCCATGCTATAACAAGTGCTACTGTAAGAGGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGAATATGCTATGAGCAGCACCGAAGAAGAACTCCGAAAAAGACTAAGACTAATCCACTTCCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTAGTAAGTGTTTTAGAGATTTGTTGTGTTCAATATGTAACAGTATTCTATGGTGTACCAGCATGGAAGAATGCGACAATTCCCCTCTTCTGTGCAACCAGGAATAGGGACACTTGGGGAACAACACAATGCTTGCCTGATAATGATGATTACTCAGAATTGGCAGTCAATATCACAGAGGCTTTTGATGCTTGGAATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTGAAACATCCATTAAGCCCTGTGTAAAACTTACCCCACTATGTATAGCAATGAGATGTAATAAAACTGAGACAGATAGGTGGGGTTTGACAGGAAGAGCAGAGACAACAACAACAGCGAAATCAACAACATCAACAACAACAACAACAGTAACACCAAAGGTTATAAATGAAGGTGATTCTTGCATAAAAAATAATAGTTGTGCAGGCTTGGAACAGGAGCCCATGATAGGTTGTAAATTTAACATGACAGGGTTAAAGAGGGACAAAAAGATAGAATATAATGAAACATGGTATTCAAGAGATTTAATCTGTGAGCAGCCAGCAAATGGAAGTGAGAGTAAATGTTACATGCAGCATTGTAACACCAGTGTTATTCAGGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATACTGTGCACCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGCTCCTAAATGTTCTAAGGTAGTGGTTTCTTCATGCACAAGAATGATGGAGACGCAAACCTCTACTTGGTTTGGCTTCAATGGTACTAGGGCAGAAAATAGAACATACATTTATTGGCATGGCAATAGTAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCAGGGTTGGTCTTCCATTCGCAACCCATAAATGAGAGACCAAAACAGGCCTGGTGCCGGTTTGGAGGAAACTGGAGCGAGGCCATCCAGGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATGATACTAGGAAAATTAATCTAACAGCTCCAGCAGGAGGAGATCCAGAAGTCACTTTTATGTGGACAAATTGTCGAGGAGAATTCTTATACTGCAAAATGAATTGGTTTCTCAATTGGGTAGAGGACAGAGACCAAAATAGTAACAGATGGAAACAACAAAAGAAGCCAGAGCAACAGAAGAGAAATTATGTGCCATGTCATATTAGACAAATAATCAACACGTGGCACAAAGTAGGCAAAAATGTATATTTGCCTCCTAGGGAAGGAGACCTGACATGTAATTCCACTGTAACTAGTCTCATAGCAGAGATAGATTGGATCAATAACAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGAGATTACTCCAATTGGCTTGGCCCCCACAGATGTAAGAAGGTACACCACAACTGGTGCCTCAAGAAATAAGAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCGACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCGGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACATGAATTGTTGCGACTGACCGTCTGGGGAACTAAGAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTGAAGGATCAGGCGCAGCTAAATTCATGGGGATGTGCTTTTAGGCAAGTCTGTCACACTACTGTACCATGGCCAAATGACTCATTGGTGCCTAATTGGGACAATATGACTTGGCAAGAGTGGGAAGGAAAGGTTGACTTCCTAGAGGCAAATATAACTCAATTATTAGAAGAAGCACAAATTCAGCAAGAAAAGAATATGTATGAATTGCAAAAACTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAAGATATATACAATATGGTGTACTAATAGTTTTAGGAGTAGTAGGGTTAAGAATAGTAATATATGTAGTGCAAATGCTAGCTAGGTTAAGACAGGGTTATAGGCCAGTGTTCTCTCCCCCTCCCGCTTATGTTCAGCAGATCCCTATCCACAAGGACCAGGAACCGCCAACCAAAGAAGGAGAAGAAGGAGAAGGTGGAGACAGAGGTGGCAGCAGATCTTGGCCTTGGCAGATAGAATATATTCATTTCCTAATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAGCTGCAGGGATTGGCTATTGAGGATCTACCAGATCCTCCAACCAGTGCTCCAGAGACTCTCAAGGACGCTGCAAAGAGTTCGTGAAGTCATCAGAATTGAAATAACCTACCTACAATATGGGTGGAGCTATTTCCAAGAAGCAGCACAGGCGTGGTGGAAATTTGCGCGAGAGACTCTTGCGAGCGCGTGGAGAGACATATGGGAGACTCTGGGAAGGGTTGGAAGAGGGATACTCGCAATCCCTAGGCGCGTCAGGCAAGGGCTTGAGCTCGCTCTCTTGTGAGCCTCAGAAATATAGTGAGGGACAATATATGAATACCCCCTGGAGGAACCCAACAGCAGAAAAAGCAAAATTAGGTTATAAACAACAAAACATGGATGATGTGGATGATGAAGATGATGACTTAGTAGGTGTCTCAGTGCACCCAAAAGTCCCCTTAAGGGCCATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAATGAGAAAAGACATAGAATATTAGATATGTACATGGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACATTAGGGCCAGGAACTAGATACCCTATGTACTTTGGGTGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCCCAGGAAGACGAGACACATTGCCTGGTGCATCCAGCACAGACTCATCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAATTGGCTTATAGCTATAAGGCATTTATTAAGTACCCAGAAGAGTTTGGTAGTAAGTCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCATTTATAAAATGGCTGACAAGAGGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAGGGACTTTCCACAAGGGGCTGTCATGGGGAGGTACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTCTCTGTATAAATACAACTGCATTTCGCTCTGTAGTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTAGAAGTAAGCAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATCTCGGTACTCGACACATAAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAGGCAGGAAAATCCCTAGCA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVsmE041-2', 'Virus', 'SIVsmE041-2', 'RNA', 'SIV', 'ACAGGGACTTGAAGGAGAGTGAGAGCTCCTGAGTACGGCTGAGTGAAGGCAGYAAGGGCGGCAGGAAYAAACCACGACGGAGTGCTCCTATAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAAAAGAGTCATAGGACTGAGTTCCCTACTTTTGAGRAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAARCTCCGTCTTGTCAGGGAAAAAAGCAGATGAATTAGAAAAAATTAGGTTACGGCCCGGCGGAAAGAAAAAGTACATGCTGAAGCATGTAGTGTGGGCAGCAAACGAATTGGACARATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGTTGTCAAARAATTCTTTCAGTYTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTYTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTGGAAACAGGAACAGCAGACAAAATGCCAGCAACAAGTAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAAGTAGGTGGCAATTATACCCACCTACCCTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTGRTAGAAGAGAAAAAATTTGGGGCAGAAGTAGTGCCAGGATTTCARGCACTATCAGAAGGCTGCACYCCCTATGACATCAATCAGATGCTAAATTGTGTRGGGGAACAYCAATCAGCCATGCAAATTATTAGAGAAATTATAAATGAAGAAGCTGCTGATTGGGATTTACAACACCCGCAGCCAGGTCCAATACCAGCAGGACARCTTAGAGATCCGAGAGGATCAGACATTGCAGGAACTACTAGCACAGTAGAAGAACAAATTCAATGGATGTATAGGCAGCAAAACCCTATACCAGTAGGTAACATTTACAGAAGGTGGATCCAATTAGGGCTGCAAAAATGTGTAAGGATGTATAATCCAACAAACATTTTAGATGTGAAACARGGACCRAAAGAGCCATTTCAAAGCTATGTAGATAGATTCTACAAGAGTCTAAGAGCAGAACAAACAGACCCAGCAGTGAAAAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCGGATTGCAAATTGGTGCTCAAGGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGARTAGGAGGACCAGGACAAAAAGCTAGACTAATGGCAGAAGCCTTGAAAGAGGCACTGACGCCAGGACAACTCCCATTTGCAGCAGTCCAACAGAGAGGACAAAGAAAGACAATTAAATGYTGGAATTGTGGAAAGGAGGGACACTCTGCGAGACAATGCAGAGCCCCTAGAAGACAGGGCTGCTGGAAGTGTGGARAAACAGGCCATGTTATGGCCAAATGCCCCGAGAGACAGGCGGGTTTTTTAGGGCTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATACCTCAGGGGTTGACACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAAGAATTACATGAGGATGGGCAGAAGGCAGAGGGARAACAGAGAGAGACCTTACAAGGARGTGACGGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTTACTGCCTACATTGAAGAACAGCCCGTAGAAGTATTATTAGATACAGGGGCTGATGATTCAATYGTAGCAGGGATAGAATTGGGTCCAAATTATACCCCTAAAATAGTAGGAGGRATAGGAGGTTTCATTAACACCAAGGAATATAAAGATGTAAAAATAAAAGTCTTAGGCAARGTAATTAAGGGAACAATTATGACAGGAGATACCCCAATTAACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAAATCTCCCCATAGCTAAGGTGGAACCTATCAAAGTAACACTAAAACCAGGAAAAGATGGACCAAAATTAAGACAGTGGCCGCTATCAAAAGAAAAGATAATTGCATTAAGRGAGATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCATATAACACCCCCACATTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGGATGCTAATAGACTTTAGAGAATTAAACAAGGTTACTCAAGATTTTACAGAAGTACAGYTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGAAGGATCACAGTATTGGATGTAGGTGATGCATATTTCTCCATACCTTTAGATGAGGAATTCAGGCAATACACTGCCTTTACTTTACCATCAGTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTAYTACCTCAAGGGTGGAAAGGATCACCAGCTATTTTTCAGCATACYATGAGAAATGTCTTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACMCTGATCCAATACATGGATGAYATCCTAATAGCTAGTGAYAGAACAGATTTAGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTAAACAGTATGGGATTTTCCACCCCAGAAGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAAAAAATAGAGTTGCCACAAAGAGAAACCTGGACAGTAAATGATATACAAAARTTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACACCTTTGCAGATTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAAYAAGATAATTCTCAGTCAAGAACAAGAAGGGTGTTACTATCAAGAGGGAAAGCCACTGGAGGCAACAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAAGACAAAATACTAAAAGTAGGCAAATTTGCAAAGATTAAGAATACACATACAAATGGAGTCAGATTATTAGCACAYGTAGTACAGAAAATAGGAAAAGAAGCAATAGTAATCTGGGGACAGGTGCCAAAATTTCATTTGCCAGTAGAGAGAGAAATCTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACCAGAATGGGACTTTGTATCAACACCTCCCTTAGTCAGAYTAGTCTTCAACCTAGTAAAAGAACCTATACAGGGAGCAGAAACATTTTATGTAGATGGATCCTGTAACAGACAGTCAAAAGAAGGAAAGGCAGGCTATGTGACAGACAGAGGYAGAGACAGAACAAAACYGCTGGAGCAGACTACCAATCAACAAGCGGARTTGGAAGCCTTCTATCTAGCCTTAGCAGATTCAGGACCARAAGCAAATATAATAGTRGATTCCCAATATGTTATGGGCATAATAGCGGGTCAACCCACKGAATCAGAAAGTAGATTAGTAAATCAGATAATAGAGGAAATGATTAAAAAGGAAGCAATTTATGTAGCRTGGGTACCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTAGATCATCTGGTWAGTCAAGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCGCAAGAAGAGCATGAGAAGTACCATAGCAATGTAAAAGARTTAGTATTCAAATTTGGCTTACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAAATGTCATCAGAAAGGAGAAGCCATACATGGACAGGTAAATGCAGAATTAGGGACTTGGCAAATGGACTGTACACATCTAGAGGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTCATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGCTAAAATTAGCCAGCAGATGGCCCATCACACATCTGCATACTGATAATGGTGCCAATTTCACATCGCAAGAAGTGAAAATGGTTGCTTGGTGGGCAGRGATTGAACAGACCTTTGGGGTACCTTATAATCCACAGAGCCARGGAGTAGTGGAAGCAATGAACCATCATCTAAAAACCCAGATAGATAGGATTAGGGAACAGGCAAATTCAATAGAGACTATAGTACTAATGGCAGYTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAGCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAAATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGAGTTGGATAGCGGTTCCMACTTGGAGGATACCGGGGAGGCTAGAGAAGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAAGACCTACAGAAGGCTTGTTATGTACCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGGGTAATCTTCCCATTAAGGGATGAGTCTCATTTGGAAGTACAAGGATATTGGAGTTTGACACCAGAGAARGGRTGGCTCAGTACTTATGCAGTRAGRATAACCTGGTACTCCAGAAATTTCTGGACAGATGTAACACCAGATTAYGCAGACACTTTACTGCATGGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACGAAGGGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAGAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTGAGTCATGTCAGATCCCAGGGAGAGGATCCCACCTGGAAACAGTGGAGAGGAAACAGTAGGCGAGGCCTTCGACTGGCTAGAAAGAACAGTAGAAGAAATAAACAGGGCAGCAGTGAATCATTTGCCGAGGGAGTTAATTTTCCAGGTTTGGCGAAGGTCCTGGGAATACTGGCATGATGAAATAGGGATGTCAGCTAGTTACACAAAATACAGATACTTGTGCTTGATACAAAAAGCTTTGTTTATGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGGAGAGCATGGGGCAGGGGGATGGAGATCAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGACAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCGTGGGATGAATGGGTAGTAGAAGTTCTGGAGGAAGTAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATCTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAGCTCATTAGAATCCTCCAGAGAGCACTCTTCATCCATTTCAGAGGTGGATGCAACCACTCCAGAATCGGCCACTCTGGAGGAGGAAATCCTCTCTCAACTATACCGCCCTCTAGAGGCGTGCTATAACAAGTGCTACTGTAAGAAGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGARTATGCTATGAGCAGCAACGAAGAAGAACTCCGAAGAAGACTAAGGCTAATACATTTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTATTAAGTGCTTTAGGGATTTCTTGTGTTCAATATGTGACAGTGTTCTATGGTATACCAGCATGGAAGAATGCGACAGTTCCCCTCTTCTGTGCAACTGAGAATAGGGACACTTGGGGAACAACACAATGCTTGCCAGATAATAATGATTACTCAGAATTGGCAATTAATGTCACAGAGGCTTTTGATGCTTGGGATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTGAAACATCCATTAAGCCCTGTGTAAAACTCACCCCCCTATGTATAGCAATGAGGTGTAATAAAACTGAGACAGATAGATGGGGCCTAACAGGAAAACCAGTAACAACGACAACATCAACAACAACAAAATCAACATCAAAACCACCAGCATTAACAGCAAAGGTTATAAATGAAAATGATCCATGTATAARAACTGATAATTGTGCAGGCTTGGAACAGGAGCCCATGATAAGTTGTAAATTTAACATGACAGGGTTAAKAAGGGACAAAAAGAAAGAATATAATGAAACATGGTATTCAAGAGATATAGTTTGTGAACAAAATAACAATGGAAATGAAAATGAAAGTAAATGCTATATGAACCATTGTAACACTAGTGTTATTCAAGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATATTGTGCTCCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGAACCTAACTGTACTAAGGTAGTAGTTTCTTCATGCACAAGAATGATGGAAACACAAACCTCTACTTGGTTTGGTTTCAATGGTACTAGAGCAGAAAATAGAACATACATTTATTGGCATGGCAGAAGCAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATGAGCTGTAGGAGACCAGGAAAAAAGATAGTCTTACCAGTCACCATTACGTCAGGGTTGATCTTCCATTCGCAAACCATAAATAAGAGGCCAAAACAGGCCTGGTGCTGGTTTRGRGGARAYTGGAAAGGGGCYATCCGAGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATGATACTRAGMARATTAATCTAACAGCTCCAGSAGGAGGAGATCCRGAAGTTACTTTCATGTGGACAAATTGTCGAGGAGAATTCTTATATTGCAAAATGAATTGGTTTCTTAATTGGGTAGATGAGACAAATGGTTTTAGATGGNNNNNNCAAAAMCMGAAGGAGAAGAAAAGGAGGAATTATGTGCCATGTCATATTAGACAGGTAATCAAYACGTGGCACAGRGTAGGCAAAAATGTGTATTTGCCTCCTAGGGAAGGAGAYYTGACATGTAATTCCACTGTAACTAGCCTCATAGCAGAAATAGATTGGATCGATAAAAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAGCTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGAGATTACTCCAATTGGCTTGGCCCCCACAAGTGTRAGAAGGTACACCACAACCGGTGCCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCRACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCGGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACTAAGAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTAAAGGATCAGGCGCATCTAAATTCATGGGGATGTGCTTTTAGGCAGGTCTGCCACACTACTGTACCATGGCCAAATGACACATTGATGCCTAATTGGGACAATATGACTTGGCAAGAGTGGGAAAGACAGGTTGACTTCCTAGAGGCAAATATAACTCAATTACTGGAAGAAGCACAAATTCAGCAAGAAGAGAACATGTATGAGTTGCAAAAATTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAAAATATATACAATATGGTGTACTTATAGTTTTAGGAGTAATAGGATTAAGAATAGTAATATATGTAGTGCAGATGTTAGCTAGGTTAAGACAGGGTTATAGGCCAGTGTTCTCTTCCCCTCCCGTTTATGTTCAGCAGATCCCTATCCAGAAGGGCCAGGAACCGCCAACCAAAGAAGGAGAAGAAGAAGACGGTGGAGGCAGAGGTGGCAACAGATCTTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAGCTAATACGCCTCTTGACTTGGCTATTCAACAGTTGCAGAGATTGGCTATTGAGGAGCTGCCAAATCCTCCAGCCAGTGCTCCAGAGCCTCTCAAGGACATTGCAGAGAGTCCGTGAAGTCATCAGGGTAGAGATAGCCTACCTACAGTATGGGTGGCGTTACTTCCAAGAAGCAGCGCAAGCATGGTGGAAATTTGCGCGAGAGACTCTTGCAAGCGCGTGGAGAGACTTATGGGAGACTCTGGGACGGGTTGGAAGGGGAATACTCGCAATCCCAAGACGTATCAGGCAAGGGCTTGAGCTCACTCTCTTGTGAGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAACCCAACAGCAGAAAGAGCAAAATTAGATTATAGACAACAAAACATGGATGATGTGGATGATGATGANNNARTAGGYTTTCCAGTGACCCCAAGAGTCCCCTTAAGGACTATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGATAGGAGACATAGAATATTGAATCTGTACTTAGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACAGCAGGGCCAGGAATCAGATACCCTATGTGCTTTGGATGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCTCAGGAGGACGAGGCACATTGCTTGATGCATCCAGCACAGACCTCTCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAGTTAGCTTATAACTATATGGCATTTGTTAAGCACCCAGAAGAGTTTGGTAGTAGATCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCCTTTTAAAAATGGCTGACAAGAAGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAAGGGGATGTTATGGGGAGGTACTGGGGAGGAACTGGCTGGAACGCCCACTTAT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_NA', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGAGTTTAAAATGAATCCAAATCAAAAAATAATAACCATTGGATCAATCAGTATAGCAATCGGAATAATTAGCCTAATGTTGCAAATAGGAAACATTATTTCAATATGGGCTAGTCACTCAATCCAAACTGGAAGTCAAAACCACACTGGAGTATGCAACCAAAGAATCATCACATATGAAAACAGCACCTGGGTGAATCACACATATGTTAATATTAACAACACCAATGTTATTGCTGGAAAGGACAAAACTTCAGTGACATTGGCCGGCAATTCATCTCTTTGTTCTATCAGTGGATGGGCTATATACACAAAAGACAACAGCATAAGAATTGGTTCCAAAGGAGATGTTTTTGTCATAAGAGAGCCTTTCATATCATGTTCTCACTTGGAATGCAGAACCTTTTTTCTGACCCAAGGTGCTCTATTAAATGACAAACATTCAAATGGGACCGTTAAGGACAGAAGTCCCTATAGGGCTTTAATGAGCTGTCCTCTAGGTGAAGCTCCGTCCCCATACAATTCAAAGTTTGAATCAGTTGCTTGGTCAGCAAGCGCATGCCATGATGGCATGGGCTGGTTAACAATCGGAATTTCTGGTCCAGACAATGGAGCAGTGGCTGTACTAAAATACAACGGCATAATAACTGAAACCATAAAAAGTTGGAAAAAGCAAATATTAAGAACACAAGAGTCTGAATGTGTCTGTGTGAACGGGTCATGTTTCACCATAATGACCGATGGCCCGAGTAATGGGGCCGCCTCGTACAAAATCTTCAAGATCGAAAAGGGAAAGGTTACTAAATCAATAGAGTTGAATGCACCCAATTTTCATTATGAGGAATGTTCCTGTTACCCAGACACTGGCACAGTGATGTGTGTATGCAGGGACAACTGGCATGGTTCAAATCGACCCTGGGTGTCTTTTAATCAAAACCTGGATTATCAAATAGGATACATCTGCAGTGGGGTGTTCGGTGACAATCCGCGTCCCAAAGATGGAGAGGGCAGCTGTAATCCAGTGACTGTTGATGGAGCAAACGGAGTAAAGGGGTTTTCATACAAATATGGTAATGGTGTTTGGATAGGAAGGACTAAAAGTAACAGACTTAGAAAGGGGTTTGAGATGATTTGGGATCCTAATGGATGGACAGATACCGACAGTGATTTCTCAGTGAAACAGGATGTTGTGGCAATAACTGATTGGTCAGGGTACAGCGGAAGTTTCGTTCAACATCCTGAGTTAACAGGATTGGACTGTATAAGACCTTGCTTCTGGGTTGAGTTAGTCAGAGGACTGCCAAAAGAAAATACAACAATCTGGACTAGTGGGAGCAGCATTTCTTTTTGTGGCGTAAATAGTGATACTGCAAACTGGTCTTGGCCAGACGGTGCTGAGTTGCCGTTTACCATTGACAAGTAGTTCGTTGAAAAAACTCCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_M', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGTAGATATTGAAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATCCCTTCAGGCCCCCTCAAAGCCGAGATCGCACAGAGACTTGAAGATGTCTTTGCTGGAAAGAATACCGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCGATCCTGTCACCTCTGACTAAGGGGATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTTAATGGGAATGGGGATCCAAATAATATGGACAGAGCAGTTAAACTGTATCGAAAGCTTAAGAGGGAGATAACATTCCATGGGGCCAAAGAAATAGCACTCAGTTATTCTGCTGGTGCACTTGCCAGTTGTATGGGACTCATATACAACAGGATGGGGGCTGTGACCACCGAATCAGCATTTGGCCTTATATGTGCAACCTGTGAACAGATTGCCGACTCCCAGCATAAGTCTCATAGGCAAATGGTAACAACAACCAATCCATTAATAAGACATGAGAACAGAATGGTTCTGGCCAGCACTACAGCTAAGGCTATGGAGCAAATGGCTGGATCGAGTGAACAAGCAGCTGAGGCCATGGGAGGTTGCTAGTCAGGCCAGGCAGATGGTGCAGGCAATGAGAGCCATTGGGACTCATCCTAGCTCTAGCACTGGTCTGAAAAATGATCTCCTTGAAAATTTGCAGGCCTATCAAAAACGAATGGGGGTGCAGATGCAACGATTCAAGTGATCCTCTTGTTGTTGCCGCAAGTATAATTGGGATTGTGCACCTGATATTGTGGATTATTGATCGCCTTTTTTCCAAAAGCATTTATCGTATCTTTAAACACGGTTTAAAAAGAGGGCCTTCTACGGAAGGAGTACCAGAGTCTATGAGGGAAGAATATCGAGAGGAACAGCAGAATGCTGTGGATGCTGACGATGGTCATTTTGTCAGCATAGAGCTGGAGTAAAAAACTACCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_NS', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGGTGGCAAAGACATAATGGATTCCCACACTGTGTCAAGCTTTCAGGTAGATTGCTTCCTTTGGCATGTCCGCAAACAAGTTGCAGACCAAGGTCTAGGCGATGCCCCCTTCCTTGATCGGCTTCGCCGAGATCAGAAGTCTCTAAAGGGAAGAGGCAGCACTCTCGGTCTGAACATCGAAACAGCCACTTGTGTTGGAAAGCAAATAGTAGAGAGGATTCTGAAAGAAGAATCCGATGAGGCATTTAAAATGACCATGGCCTCCGCACTTGCTTCGCGGTACCTAACTGACATGACTATTGAAGAAATGTCAAGGGACTGGTTCATGCTCATGCCCAAGCAGAAAGTGGCTGGCCCTCTTTGTGTCAGAATGGACCAGGCGATAATGGATAAGAACATCATACTGAAAGCGAATTTCAGTGTGATTTTTGATCGGTTGGAGAATCTGACATTACTAAGGGCTTTCACCGAAGAGGGAGCAATTGTTGGCGAAATTTCACCATTGCCTTCTCTTCCAGGACATACTAATGAGGATGTCAAAAATGCAATTGGGGTCCTCATCGGGGGACTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGTAATGAGACTGGGGGACCTCCATTCACTCCAACACAGAAACGGAAAATGGCGGGAACAATTAGGTCAGAAGTTTGAAGAAATAAGATGGCTGATTGAAGAAGTGAGGCATAAATTGAAGACGACAGAGAATAGTTTTGAGCAAATAACATTTATGCAAGCATTACAGCTATTGTTTGAGGTGGAACAAGAGATTAGAACGTTTTCGTTTCAGCTTATTTAATGATAAAAAACACCCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_HA', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGAAAGTAAAACTACTGGTCCTGTTATGCACATTTACAGCTACATATGCAGACACAATATGTATAGGCTACCATGCTAACAACTCGACCGACACTGTTGACACAGTACTTGAAAAGAATGTGACAGTGACACACTCTGTCAACCTGCTTGAGAACAGTCACAATGGAAAACTATGTCTATTAAAAGGAATAGCCCCACTACAATTGGGTAACTGCAGCGTTGCCGGGTGGATCTTAGGAAACCCAGAATGCGAATTACTGATTTCCAAGGAGTCATGGTCCTACATTGTAGAAAAACCAAATCCTGAGAATGGAACATGTTACCCAGGACATTTCGCTGACTATGAGGAACTGAGGGAGCAATTGAGTTCAGTATCTTCATTTGAGAGGTTCGAAATATTCCCCAAAGAAAGCTCTTGGCCCAACCACACCGTAACCGGAGTGTCAGCATCATGCTCCCATAATGGGGAAAACAGTTTTTACAGAAATTTGCTATGGCTGACGGGGAAGAATGGTTTGTACCCAAACCTGAGCAAGTCCTATGCAAACAACAAAGAAAAAGAAGTCCTTGTACTATGGGGTGTTCATCACCCGCCAAACATAGCTGACCAAAAGACCCTCTATCATACAGAAAATGCTTATGTTTCTGTAGTGTCTTCACATTATAGCAGAAAATTCACCCCAGAAATAGCCAAAAGACCCAAAGTAAGAGATCAAGAAGGAAGAATCAACTACTACTGGACTCTGCTTGAACCCGGGGATACAATAATATTTGAGGCAAATGGAAATCTAATAGCGCCAAGATATGCTTTCGCACTGAGTAGAGGCTTTGGATCAGGAATCATCAACTCAAATGCACCAATGGATAAATGTGATGCGAAGTGCCAAACACCTCAAGGAGCTATAAACAGCAGTCTTCCTTTCCAGAACGTACACCCAGTCACAATAGGAGAGTGTCCAAAGTATGTCAGGAGTGCAAAATTAAGGATGGTTACAGGACTAAGGAACATCCCATCCATTCAATCCAGAGGTTTGTTTGGAGCCATTGCCGGTTTCATTGAAGGGGGGTGGACTGGAATGGTAGATGGTTGGTATGGTTATCATCATCAGAATGAGCAAGGATCTGGCTATGCTGCAGATCAAAAAAGCACACAAAATGCCATTAATGGGATTACAAACAAGGTGAATTCTGTAATTGAGAAAATGAACACTCAATTCACAGCAGTGGGCAAAGAATTCAACAAATTAGAAAGAAGGATGGAAAACTTGAATAAAAAAGTTGATGATGGATTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAAGGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGTTAAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACGATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATATTCCGAAGAATCAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGATTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAATCAGCTTCTGGATGTGTTCCAATGGGTCTTTGCAGTGTAGAATATGCATC'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_M', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATCCCGTCAGGCCCCCTCAAAGCCGAGATCGCACAGAGACTTGAAGATGTATTTGCTGGAAAGAATACCGATCTTGAGGCTCTCATGGAGTGGTTAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTTAATGGGAATGGGGATCCAAATAATATGGACAGAGCAGTCAAACTTTATCGAAAGCTTAAGAGGGAGATAACATTCCATGGGGCCAAAGAAATAGCACTCAGTTATTCTGCTGGTGCACTTGCCAGTTGTATGGGACTCATATACAACAGGATGGGGGCTGTGACCACCGAATCAGCATTTGGCCTTATATGTGCAACCTGTGAACAGATTGCCGACTCCCAGCATAAGTCTCACAGGCAAATGGTAACAACAACCAATCCATTAATAAGACATGAGAACAGAATGGTTCTGGCCAGCACCACAGCTAAGGCTATGGAACAAATGGCTGGATCGAGCGAACAAGCAGCTGAGGCCATGGAGGTTGCTAGTCAGGCCAGGCAGATGGTGCAGGCAATGAGAGCCATTGGGACTCATCCTAGCTCTAGCACTGGTCTGAAAAATGATCTCCTTGAAAATTTACAGGCCTATCAGAAACGAATGGGGGTGCAGATGCAACGATTCAAGTGATCCTCTTGTTGTTGCCGCAAGTATAATTGGGATTGTGCACTTGATATTGTGGATTATTGATCGCCTTTTTTCCAAAAGCATTTATCGTATCTTTAAACACGGTTTAAAAAGAGGGCCTTCTACGGAAGGAGTACCAGAGTCTATGAGGGAAGAATATCGAGAGGAACAGCAGAATGCTGTGGATGCTGACGATGATCATTTTGTCAGCATAGAGCTGGAGTAAAAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_NA', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGAACCCAAATCAAAAGATAATAACCATTGGATCAATCAGTATAGCAATCGGAATAATTAGTCTAATGTTGCAAATAGGAAATATTATTTCAATATGGGCTAGTCACTCAATCCAAACTGGGAGTCAAAACAACACTGGAATATGCAACCAAAGAATCATCACATATGAAAACAGCACCTGGGTGAATCACACATATGTTAATATTAACAACACTAATGTTGTTGCTGGAGAGGACAAAACATCAGTGACATTGGCCGGCAATTCATCTCTTTGTTCTATCAGTGGATGGGCTATATACACAAAAGACAACAGCATAAGAATTGGCTCCAAAGGAGATGTTTTTGTCATAAGAGAACCTTTCATATCATGTTCTCACTTGGAATGCAGAACCTTTTTTCTGACCCAAGGCGCTCTATTAAATGACAAACATTCAAATGGGACCGCAAAGGACAGAAGTCCTTATAGGGCCTTAATGAGCTGTCCTCTAGGTGAAGCTCCGTCCCCATACAATTCAAAGTTCGAATCAGTTGCATGGTCAGCAAGCGCATGCCATGATGGCATGGGCTGGTTAACAATCGGAATTTCTGGTCCAGACAATGGAGCTGTGGCTGTACTAAAATACAACGGAATAATAACTGGAACCATAAAAAGTTGGAAAAAGCAAATATTAAGAACACAAGAGTCTGAATGTGTCTGTATGAACGGGTCATGTTTCACCATAATGACCGATGGCCCGAGTAATAAGGCCGCCTCGTACAAAATTTTCAAGATCGAAAAGGGGAAGGTTACTAAATCAATAGAGTTGAATGCACCCAATTTTTATTATGAGGAATGCTCCTGTTACCCAGATACTGGCATAGTGATGTGTGTATGCAGGGACAACTGGCATGGTTCAAATCGACCTTGGGTGTCTTTTAATCAAAACTTGGATTATCAAATAGGATACATCTGCAGTGGAGTGTTTGGTGACAATCCGCGTCCCGAAGATGGAGAGGGCAGCTGCAATCCAGTGACTGTTGATGGAGCAAACGGAGTAAAAGGGTTTTCATACAAATATGGTAATGGTGTTTGGATAGGGAGGACCAAAAGTAACAGACTTAGAAAGGGGTTTGAGATGATTTGGGATCCTAATGGATGGACAAATACCGACAGTGATTTCTCAGTGAAACAGGATGTTGTAGCAATAACTGATTGGTCAGGGTACAGCGGAAGTTTCGTCCAACATCCTGAGTTAACAGGATTGGGCTGTATAAGACCTTGCTTCTGGGTTGAGTTAGTCAGAGGGCTGCCTAGAGAAAATACAACAATCTGGACTAGTGGGAGCAGCATTTCTTTTTGTGGCGTTAATAGTGATACTGCAAACTGGTCTTGGCCAGACGGTGCTGAGTTGCCGTTCACCATTGACAAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_NP', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGCGTCCCAAGGCACCAAACGGTCTTACGAACAGATGGAGACTGATGGGGAACGCCAGAATGCAACTGAAATCAGAGCATCCGTCGGAAGAATGATTGGTGGAATTGGGCGATTCTACATCCAAATGTGCACCGAGCTTAAGCTCAATGATTATGAGGGACGGCTGATCCAGAACAGCTTAACAATAGAGAGAATGGTGCTCTCTGCTTTTGATGAGAGGAGAAATAAATATCTAGAGGAACATCCCAGCGCGGGGAAAGATCCTAAGAAAACTGGAGGACCCATATACAAGAGAGTAGATGGAAAGTGGGTGAGGGAACTCGTCCTTTATGACAAAGAAGAAATAAGGCGGATTTGGCGCCAAGCCAACAATGGTGATGATGCAACGGCTGGTTTGACTCACATTATGATCTGGCATTCTAATTTGAATGATACAACTTACCAGAGGACAAGAGCTCTTGTCCGCACCGGAATGGATCCCAGGATGTGCTCTTTGATGCAAGGTTCAACTCTCCCTAGAAGATCTGGAGCAGCAGGCGCCGCAGTCAAAGGAGTTGGGACAATGGTATTGGAATTAATCAGGATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAGAATGGAAGAAAAACAAGGATTGCTTATGAGAGAATGTGCAACATTCTAAAAGGAAAATTTCAAACAGCTGCACAAAAAGCAATGATGGACCAAGTGAGAGAAAGCCGGAACCCAGGAAATGCTGAGATCGAAGATCTCACTTTTCTGGCACGGTCTGCACTCATATTGAGAGGATCAGTTGCTCACAAGTCTTGCCTGCCTGCCTGTGTGTATGGACCAGCCGTAGCCAGTGGGTATGACTTCGAAAAAGAGGGTTACTCTTTGGTAGGAGTAGACCCTTTCAAACTGCTTCAAACCAGTCAGGTATACAGTCTAATTAGACCAAACGAGAATCCCGCACACAAGAGCCAGTTGGTGTGGATGGCATGCAATTCTGCTGCATTTGAAGATCTAAGAGTGTCAAGCTTCATCAGAGGAACAAGAGTACTTCCAAGGGGGAAGCTCTCCACTAGAGGAGTACAAATTGCTTCAAATGAAAACATGGATGCTATTGTGTCAAGTACTCTTGAACTGAGAAGCAGATACTGGGCCATAAGAACCAGAAGTGGAGGGAACACTAATCAACAAAGGGCCTCTGCGGGCCAAATCAGCACACAACCTACGTTTTCTGTGCAGAGAAACCTCCCATTTGACAAAGCAACCATCATGGCAGCATTCTCTGGGAATACAGAGGGAAGAACATCAGACATGAGGGCAGAAATCATAAAGATGATGGAAAGTGCAAGACCAGAAGAAGTGTCCTTCCAGGGGCGGGGAGTCTTTGAGCTCTCGGACGAAAGGGCAACGAACCCGATCGTGCCCTCCTTTGACATGAGTAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTACGACAATTAAAGAAAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_NS', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGACTCCCACACTGTGTCAAGCTTTCAGGTAGATTGCTTCCTTTGGCATGTCCGCAAACAAGTTGCAGACCAAGATCTAGGCGATGCCCCCTTCCTTGATCGGCTTCGCCGAGATCAGAAGTCTCTAAAGGGAAGAGGCAGTACTCTCGGTCTGAACATCGAAACAGCCACTTGTGTTGGAAAGCAAATAGTAGAGAGGATTCTGAAAGAAGAATCCGATGAGGCACTTAAAATGACCATGGCCTCCGCACTTGCTTCGCGGTACCTAACTGACATGACTGTTGAAGAAATGTCAAGGGACTGGTTCATGCTCATGCCCAAGCAAAAAGTGGCTGGCCCTCTTTGTGTCAGAATGGACCAGGCAACAATGGATAAGAACATCATACTGAAAGCGAATTTCAGTGTGATTTTTGACCGGTTGGAGAATCTGACATTATTAAGGGCTTTCACCGAAGAGGGAGCAATTGTTGGCGAAATTTCACCATTGCCTTCTTTTCCAGGACATACTAATGAGGATGTCAAAAATGCAATTGGGGTCCTCATCGGGGGACTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGTAATGAGACTGGGGGACCTCCATTCACTACAACACAGAAACGGAAAATGGCGGGAACAACTAGGTCAGAAGTTTGAAGAAGTAAGATGGCTGATTGAAGAAGTGAGGCATAAATTGAAGACGACAGAGAATAGTTTTGAGCAAATAACATTTATGCAAGCATTACAGCTATTATTTGAAGTGGAACAAGAGATTAGAACGTTTTCGTTTCAGCTTATTTAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_PA', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGAAGATTTTGTACGACAATGCTTCAATCCGATGATTGTCGAGCTTGCAGAAAAAGCAATGAAAGAGTATGGAGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACCCACTTGGAAGTGTGCTTCATGTATTCAGATTTTCATTTCATCAATGAGCAAGGCGAATCAATAATAGTAGAGCCTGAGGACCCAAATGCACTTTTAAAGCACAGATTTGAGATAATAGAGGGACGAGATCGTACAATGGCATGGACAGTTGTAAACAGTATTTGCAACACCACAGGAGCTGAGAAACCAAAGTTCCTGCCAGATCTGTATGATTACAAAGAGAATAGATTCATCGAGATTGGAGTGACAAGGAGGGAAGTTCACATATACTATCTGGAAAAGGCCAACAAAATTAAATCTGAGAAGACACACATTCACATTTTCTCATTCACCGGCGAAGAAATGGCCACAAAGGCTGATTACACTCTCGATGAAGAAAGCAGAGCTAGGATTAAAACCAGATTGTTCACCATAAGACAAGAAATGGCAAGCAGAGGTCTTTGGGACTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACCATTGAAGAAAGATTTGAAATCACAGGGACAATGCGCAGGCTCGCTGACCAAAGCCTTCCGCCGAACTTCTCCTGCATTGAGAATTTTAGAGCCTATGTGGATGGATTTGAACCGAACGGCTACATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAAGTAAATGCTAGAATTGAGCCTTTTTTGAAAACAACACCTCGACCAATTAGACTTCCGAATGGGCCTCCTTGTTTTCAGCGGTCAAAATTTCTGCTGATGGATTCTTTAAAATTAAGCATTGAGGATCCGAATCATGAAGGTGAGGGGATACCACTATATGATGCAATCAAGTGTATGAGGACATTCTTTGGATGGAAAGAACCCACTGTTGTCAAGCCACACGAGAAGGGAATAAATCCAAATTATCTGTTGTCGTGGAAACAAGTATTGGAAGAGCTGCAGGACATTGAGAGTGAGGAGAAGATTCCAAGAACAAAAAACATGAAAAAAACTAGTCAGCTAAAGTGGGCACTTGGTGAGAACATGGCACCAGAGAAGGTGGATTTTGATGACTGTAAAGATATAAGCGATTTGAAGCAATATGACAGTGACGAACCTGAATTAAGATCATTTTCAAGTTGGATCCAGAATGAGTTCAACAAGGCATGCGAGCTGACCGATTCAATCTGGATAGAGCTTGATGAGATTGGAGAAGATGTGGCTCCGATTGAACACATTGCAAGCATGAGAAGGAATTACTTCACAGCTGAGGTGTCCCACTGCAGAGCCACAGAATATATAATGAAGGGGGTATACATTAATACTGCTTTGCTCAATGCATCCTGTGCAGCAATGGATGATTTCCAACTAATTCCCATGATAAGCAAATGTAGAACTAAAGAGGGAAGGAGAAAGACCAATTTGTACGGCTTCATCGTAAAAGGAAGATCTCACTTAAGGAATGACACCGATGTGGTAAACTTTGTGAGCATGGAGTTTTCCCTCACTGACCCAAGACTTGAGCCACACAAATGGGAGAAGTACTGCGTTCTTGAGATAGGAGATATGCTTCTAAGGAGTGCAATAGGCCAAGTGTCAAGGCCCATGTTCTTGTATGTAAGGACAAATGGAACCTCAAAAATTAAAATGAAATGGGGAATGGAGATGAGGCGTTGCCTCCTCCAATCCCTCCAACAAATAGAGAGCATGATTGAAGCTGAGTCCTCTGTCAAAGAGAAAGACATGACAAAAGAGTTTTTTGAGAATAAATCAGAAACATGGCCCATTGGAGAGTCACCAAAAGGAGTGGAAGAAGGTTCCATTGGGAAAGTATGCAGGACACTGTTGGCTAAGTCAGTATTCAATAGCCTGTATGCATCTCCACAATTAGAAGGATTTTCAGCTGAGTCAAGAAAGTTGCTCCTCATTGTTCAGGCTCTTAGGGACAATCTGGAACCTGGGACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCTTCTTGGTTCAACTCCTTCCTAACACATGCATTGAGATAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_PB1', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGATGTCAATCCGACATTACTTTTCTTAAAAGTGCCAGCACAAAATGCTATAAGCACAACTTTTCCTTATACTGGTGACCCTCCTTACAGCCATGGGACAGGAACAGGGTACACCATGGATACAGTCAACAGGACACACCAGTACTCAGAAAGAGGAAGATGGACAAAAAATACCGAAACGGGAGCACCGCAACTTAACCCAATTGATGGTCCCTTACCGGAAGACAATGAACCAAGTGGCTATGCCCAAACAGATTGTGTATTAGAAGCAATGGCTTTCCTTGAAGAATCCCATCCCGGTATCTTTGAAAACTCTTGTATTGAAACAATGGAGGTTGTTCAACAAACAAGGGTGGACAAACTGACACAAGGCAGACAGACCTATGACTGGACTCTAAATAGGAACCAGCCTGCTGCCACAGCATTGGCAAACACTATAGAAGTATTCAGATCAAACGGCCTCATAGCAAATGAATCTGGGAGGCTAATAGACTTCCTTAAAGATGTAATGGAGTCGATGGACAGAGGCGAAGTAGAGGTCACAACTCATTTTCAAAGAAAGAGGAGAGTGAGAGACAATGTAACTAAAAAAATGGTGACCCAAAGAACAATAGGCAAAAAGAAACATAAATTAGACAAAAGAAGTTACCTAATTAGGGCATTAACCCTGAACACAATGACCAAAGATGCTGAGAGGGGGAAACTAAAACGCAGAGCAATTGCAACCCCAGGAATGCAAATAAGAGGGTTTGTATACTTTGTTGAGACACTGGCAAGAAGCATATGTGAAAAGCTTGAACAATCAGGATTGCCAGTTGGAGGAAATGAGAAGAAAGCAAAGTTAGCAAATGTTGTAAGGAAGATGATGACCAACTCCCAGGACACTGAAATTTCTTTCACCATAACCGGAGATAACACAAAATGGAACGAAAATCAAAACCCTAGAATGTTCTTGGCCATGATCACATATATAACCAAAAATCAGCCTGAATGGTTCAGAAATATTCTAAGTATTGCTCCAATAATGTTTTCAAATAAGATGGCGAGACTAGGCAAGGGGTACATGTTTGAAAGCAAGAGTATGAAACTGAGAACTCAAATACCTGCAGAGATGCTAGCCAACATAGACTTGAAATATTTCAATGATTCAACAAAAAAGAAAATTGAAAAAATCCGACCATTATTAATAGATGGAACTGCATCATTGAGTCCTGGAATGATGATGGGCATGTTCAATATGTTGAGCACCGTCTTGGGCGTCTCCATTCTGAATCTTGGGCAAAAGAGATACACCAAGACTACTTACTGGTGGGATGGTCTTCAATCGTCTGATGATTTTGCTTTGATTGTGAACGCACCCAACTATGCAGGAATTCAAGCTGGAGTTGACAGGTTTTATCGAACCTGTAAGCTGCTCGGAATTAATATGAGCAAAAAGAAGTCTTACATAAACAGAACAGGTACCTTTGAATTCACGAGCTTTTTCTATCGTTATGGGTTTGTTGCCAATTTTAGCATGGAGCTTCCTAGTTTTGGGGTGTCTGGGGTCAATGAATCTGCAGACATGAGTATTGGAGTCACTGTCATCAAAAACAATATGATAAACAATGACCTTGGCCCAGCAACTGCTCAAATGGCCCTTCAGTTATTTATCAAAGATTACAGGTACACTTATCGATGCCACCGAGGTGACACACAAATACAAACCCGGAGATCATTTGAGATAAAGAAACTATGGGACCAAACCCGCTCAAAAGCTGGACTGTTGGTCTCTGATGGAGGCCCCAATTTGTATAACATTAGAAATCTCCATATTCCTGAAGTTTGCTTGAAATGGGAGTTGATGGATGAGGATTACCAGGGGCGTTTATGCAACCCATTAAACCCGTTTGTCAGCCATAAAGAGATTGAATCTGTGAACAGTGCAGTGATAATGCCGGCACATGGTCCAGCCAAAAATATGGAGTATGACGCTGTTGCAACAACACACTCCTGGGTCCCCAAAAGAAATCGATCCATTTTGAACACGAGCCAAAGGGGGATACTTGAAGATGAGCAAATGTATCAGAGGTGCTGCAATTTATTTGAAAAATTCTTCCCAAGTAGCTCATACAGAAGACCAGTTGGAATATCCAGTATGGTAGAGGCTATGGTCTCAAGAGCCCGAATTGATGCACGGATTGATTTCGAATCTGGAAGGATAAAGAAAGAGGAATTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGACCTCAGACGGCAAAAATGA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_PB2', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGAAAGAATAAAAGAGCTAAGGAATTTGATGTCACAATCTCGCACTCGCGAGATACTTACCAAAACTACTGTAGACCACATGGCCATAATCAAGAAATACACATCAGGAAGACAGGAGAAAAACCCATCACTTAGGATGAAATGGATGATGGCAATGAAATACCCAATTACTGCTGATAAAAGGATAACGGAAATGATTCCTGAAAGAAATGAGCATGGACAGACATTATGGAGTAAGGTGAATGATGCCGGATCAGACCGAGTGATGGTATCACCCCTGGCTGTGACATGGTGGAACAGAAATGGACCAGTGGCAAGTACTATTCACTATCCAAAAATCTACAAAACTTACTTTGAAAAGGTTGAAAGGTTAAAACAAGGAACCTTTGGCCCTGTACACTTTAGAAACCAAGTCAAAATACGCCGAAGAGTCGACATAAATCCTGGTCATGCAGACCTCAGCGCCAAGGAGGCACAGGATGTAATTATGGAAGTTGTTTTCCCTAATGAAGTAGGAGCCAGAATACTAACATCAGAATCGCAATTAACGATAACCAAGGAGAAAAAAGAAGAACTCCAAAATTGCAAAATTTCCCCTTTGATGGTTGCATACATGTTAGAGAGGGAACTTGTCCGCAAAACAAGATTTCTCCCGGTTGCAGGTGGAACAAGCAGTGTGTACATTGAAGTTTTGCATTTAACACAGGGGACATGCTGGGAGCAGATGTACACTCCAGGTGGGGAGGTGAGGAATGATGATGTTGATCAAAGCCTAATTATTGCTGCTAGGAACATAGTGAGAAGAGCTGCAGTATCAGCAGATCCACTAGCATCTTTATTAGAAATGTGCCATAGCACACAGATTGGTGGAACAAGGATGGTGGATATTCTCAGGCAAAATCCAACAGAAGAACAAGCTGTGGACATATGCAAAGCAGCAATGGGGCTGAGAATCAGTTCATCCTTCAGTTTTGGCGGATTCACATTTAAGAGAACAAGTGGATCATCAGTCAAAAGGGAGGAAGAAGTGCTCACGGGCAATCTGCAAACATTGAAACTAACTGTGCATGAGGGATATGAAGAGTTCACAATGGTTGGGAAAAGGGCAACAGCTATACTCAGAAAAGCAACCAGGAGATTGATCCAACTAATAGTGAGTGGAAGAGACGAACAATCAATAGTCGAAGCAATAGTTGTAGCAATGGTATTCTCACAAGAAGATTGCATGATAAAAGCAGTTAGAGGTGATCTGAATTTCGTTAATAGAGCGAATCAGCGGTTGAATCCCATGCATCAACTATTGAGACATTTTCAGAAGGATGCTAAAGTACTTTTCTTAAATTGGGGAGTTGAATCTATTGACAATGTGATGGGAATGATTGGGATATTACCTGATATGACTCCAAGTACCGAGATGTCAATGAGAGGAGTGAGAGTCAGCAAAATGGGTGTAGATGAATACTCCAATGCTGAAAGGGTAGTGGTAAGCATTGACCGTTTTTTGAGAGTCCGGGACCAAAGAGGAAATGTGCTACTGTCTCCAGAGGAAGTAAGTGAAACACAAGGGACAGAGAAACTGACAATAACTTATTCTTCATCAATGATGTGGGAGATTAATGGCCCTGAGTCAGTCTTGATCAATACCTATCAGTGGATCATCAGAAACTGGGAGACTGTTAAAATTCAGTGGTCTCAGAATCCTACGATGCTGTACAATAAAATGGAATTTGAACCATTTCAGTCTCTAGTCCCCAAGGCCATTAGAGGCCAATACAGTGGGTTTGTTAGAACTCTATTCCAACAAATGAGGGATGTGCTTGGGACTTTTGACACAACTCAGATAATAAAACTTCTTCCCTTTGCAGCCGCTCCTCCAAAGCAAAGCAGAATGCAATTCTCGTCATTAACTGTGAATGTGAGGGGATCAGGAATGAGAATACTTGTGAGGGGTAATTCTCCAGTATTCAACTACAACAAGACTACCAAGAGACTCACAGTCCTCGGAAAGGATGCTGGCACTTTAACTGAAGACCCAGATGAAGGCACAGCTGGAGTGGAATCTGCGGTTCTAAGGGGGTTCCTCATTTTAGGCAAAGAAGATAGAAGATATGGGCCAGCATTAAGCATCAATGAATTGAGCAACCTTGCGAAAGGGGAAAAAGCTAATGTGCTAATTGGGCAAGGGGATGTAGTGTTGGTAATGAAACGAAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_HA', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGAAGGCAATACTAGTAGTTCTGCTATATACATTTGCAACCGCAAATGCAGACACATTATGTATAGGTTATCATGCGAACAATTCAACAGACACTGTAGACACAGTACTAGAAAAGAATGTAACAGTAACACACTCTGTTAACCTTCTAGAAGACAAGCATAACGGGAAACTATGCAAACTAAGAGGGGTAGCCCCATTGCATTTGGGTAAATGTAACATTGCTGGCTGGATCCTGGGAAATCCAGAGTGTGAATCACTCTCCACAGCAAGCTCATGGTCCTACATTGTGGAAACACCTAGTTCAGACAATGGAACGTGTTACCCAGGAGATTTCATCGATTATGAGGAGCTAAGAGAGCAATTGAGCTCAGTGTCATCATTTGAAAGGTTTGAGATATTCCCCAAGACAAGTTCATGGCCCAATCATGACTCGAACAAAGGTGTAACGGCAGCATGTCCTCATGCTGGAGCAAAAAGCTTCTACAAAAATTTAATATGGCTAGTTAAAAAAGGAAATTCATACCCAAAGCTCAGCAAATCCTACATTAATGATAAAGGGAAAGAAGTCCTCGTGCTATGGGGCATTCACCATCCATCTACTAGTGCTGACCAACAAAGTCTCTATCAGAATGCAGATACATATGTTTTTGTGGGGTCATCAAGATACAGCAAGAAGTTCAAGCCGGAAATAGCAATAAGACCCAAAGTGAGGGATCAAGAAGGGAGAATGAACTATTACTGGACACTAGTAGAGCCGGGAGACAAAATAACATTCGAAGCAACTGGAAATCTAGTGGTACCGAGATATGCATTCGCAATGGAAAGAAATGCTGGATCTGGTATTATCATTTCAGATACACCAGTCCACGATTGCAATACAACTTGTCAAACACCCAAGGGTGCTATAAACACCAGCCTCCCATTTCAGAATATACATCCGATCACAATTGGAAAATGTCCAAAATATGTAAAAAGCACAAAATTGAGACTGGCCACAGGATTGAGGAATATCCCGTCTATTCAATCTAGAGGCCTATTTGGGGCCATTGCCGGTTTCATTGAAGGGGGGTGGACAGGGATGGTAGATGGATGGTACGGTTATCACCATCAAAATGAGCAGGGGTCAGGATATGCAGCCGACCTGAAGAGCACACAGAATGCCATTGACGAGATTACTAACAAAGTAAATTCTGTTATTGAAAAGATGAATACACAGTTCACAGCAGTAGGTAAAGAGTTCAACCACCTGGAAAAAAGAATAGAGAATTTAAATAAAAAAGTTGATGATGGTTTCCTGGACATTTGGACTTACAATGCCGAACTGTTGGTTCTATTGGAAAATGAAAGAACTTTGGACTACCACGATTCAAATGTGAAGAACTTATATGAAAAGGTAAGAAGCCAGCTAAAAAACAATGCCAAGGAAATTGGAAACGGCTGCTTTGAATTTTACCACAAATGCGATAACACGTGCATGGAAAGTGTCAAAAATGGGACTTATGACTACCCAAAATACTCAGAGGAAGCAAAATTAAACAGAGAAGAAATAGATGGGGTAAAGCTGGAATCAACAAGGATTTACCAGATTTTGGCGATCTATTCAACTGTCGCCAGTTCATTGGTACTGGTAGTCTCCCTGGGGGCAATCAGTTTCTGGATGTGCTCTAATGGGTCTCTACAGTGTAGAATATGTATTTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_M', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTTTCTATCATCCCGTCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTGGAAAGTGTCTTTGCAGGAAAGAACACAGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGAATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTAAATGGGAATGGGGACCCGAACAACATGGATAGAGCAGTTAAACTATACAAGAAGCTCAAAAGAGAAATAACGTTCCATGGGGCCAAGGAGGTGTCACTAAGCTATTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGGATGGGAACAGTGACCACAGAAGCTGCTTTTGGTCTAGTGTGTGCCACTTGTGAACAGATTGCTGATTCACAGCATCGGTCTCACAGACAGATGGCTACTACCACCAATCCACTAATCAGGCATGAAAACAGAATGGTGCTGGCTAGCACTACGGCAAAGGCTATGGAACAGATGGCTGGATCGAGTGAACAGGCAGCGGAGGCCATGGAGGTTGCTAATCAGACTAGGCAGATGGTACATGCAATGAGAACTATTGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTTGAAAATTTGCAGGCCTACCAGAAGCGAATGGGAGTGCAGATGCAGCGATTCAAGTGATCCTCTCGTCATTGCAGCAAATATCATTGGGATCTTGCACCTGATATTGTGGATTACTGATCGTCTTTTTTTCAAATGTATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCTGAGTCCATGAGGGAAGAATATCAACAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTAGAGTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_NA', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGAATCCAAACCAAAAGATAATAACCATTGGTTCGGTCTGTATGACAATTGGAATGGCTAACTTAATATTACAAATTGGAAACATAATCTCAATATGGATTAGCCACTCAATTCAACTTGGGAATCAAAATCAGATTGAAACATGCAATCAAAGCGTCATTACTTATGAAAACAACACTTGGGTAAATCAGACATATGTTAACATCAGCAACACCAACTTTGCTGCTGGACAGTCAGTGGTTTCCGTGAAATTAGCGGGCAATTCCTCTCTCTGCCCTGTTAGTGGATGGGCTATATACAGTAAAGACAACAGTGTAAGAATCGGTTCCAAGGGGGATGTGTTTGTCATAAGGGAACCATTCATATCATGCTCCCCCTTGGAATGCAGAACCTTCTTCTTGACTCAAGGGGCCTTGCTAAATGACAAACATTCCAATGGAACCATTAAAGACAGGAGCCCATATCGAACCCTAATGAGCTGTCCTATTGGTGAAGTTCCCTCTCCATACAACTCAAGATTTGAGTCAGTCGCTTGGTCAGCAAGTGCTTGTCATGATGGCATCAATTGGCTAACAATTGGAATTTCTGGCCCAGACAATGGGGCAGTGGCTGTGTTAAAGTACAACGGCATAATAACAGACACTATCAAGAGTTGGAGAAACAATATATTGAGAACACAAGAGTCTGAATGTGCATGTGTAAATGGTTCTTGCTTTACTGTAATGACCGATGGACCAAGTAATGGACAGGCCTCATACAAGATCTTCAGAATAGAAAAGGGAAAGATAGTCAAATCAGTCGAAATGAATGCCCCTAATTATCACTATGAGGAATGCTCCTGTTATCCTGATTCTAGTGAAATCACATGTGTGTGCAGGGATAACTGGCATGGCTCGAATCGACCGTGGGTGTCTTTCAACCAGAATCTGGAATATCAGATAGGATACATATGCAGTGGGATTTTCGGAGACAATCCACGCCCTAATGATAAGACAGGCAGTTGTGGTCCAGTATCGTCTAATGGAGCAAATGGAGTAAAAGGGTTTTCATTCAAATACGGCAATGGTGTTTGGATAGGGAGAACTAAAAGCATTAGTTCAAGAAACGGTTTTGAGATGATTTGGGATCCGAACGGATGGACTGGGACAGACAATAACTTCTCAATAAAGCAAGATATCGTAGGAATAAATGAGTGGTCAGGATATAGCGGGAGTTTTGTTCAGCATCCAGAACTAACAGGGCTGGATTGTATAAGACCTTGCTTCTGGGTTGAACTAATCAGAGGGCGACCCAAAGAGAACACAATCTGGACTAGCGGGAGCAGCATATCCTTTTGTGGTGTAAACAGTGACACTGTGGGTTGGTCTTGGCCAGACGGTGCTGAGTTGCCATTTACCATTGACAAGTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_NP', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGCGTCTCAAGGCACCAAACGATCATATGAACAAATGGAGACTGGTGGGGAGCGCCAGGATGCCACAGAAATCAGAGCATCTGTCGGAAGAATGATTGGTGGAATCGGGAGATTCTACATCCAAATGTGCACTGAACTCAAACTCAGTGATTATGATGGACGACTAATCCAGAATAGCATAACAATAGAGAGGATGGTGCTTTCTGCTTTTGATGAGAGAAGAAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAGGACCCTAAGAAAACAGGAGGACCCATATATAGAAGAGTAGACGGAAAGTGGATGAGAGAACTCATCCTTTATGACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCAAACAATGGCGAAGATGCAACAGCAGGTCTTACTCATATCATGATTTGGCATTCCAACCTGAATGATGCCACATATCAGAGAACAAGAGCGCTTGTTCGCACCGGAATGGATCCCAGAATGTGCTCTCTAATGCAAGGTTCAACACTTCCCAGAAGGTCTGGTGCCGCAGGTGCTGCGGTGAAAGGAGTTGGAACAATAGCAATGGAGTTAATCAGAATGATCAAACGTGGAATCAATGACCGAAATTTCTGGAGGGGTGAAAATGGACGAAGGACAAGGGTTGCTTATGAAAGAATGTGCAATATCCTCAAAGGAAAATTTCAAACAGCTGCCCAGAGGGCAATGATGGATCAAGTAAGAGAAAGTCGAAACCCAGGAAACGCTGAGATTGAAGACCTCATTTTCCTGGCACGGTCAGCACTCATTCTGAGGGGATCAGTTGCACATAAATCCTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCAAGTGGGCATGACTTTGAAAGGGAAGGGTACTCACTGGTCGGGATAGACCCATTCAAATTACTCCAAAACAGCCAAGTGGTCAGCCTGATGAGACCAAATGAAAACCCAGCTCACAAGAGTCAATTGGTGTGGATGGCATGCCACTCTGCTGCATTTGAAGATTTAAGAGTATCAAGTTTCATAAGAGGAAAGAAAGTGATTCCAAGAGGAAAGCTTTCCACAAGAGGGGTCCAGATTGCTTCAAATGAGAATGTGGAAACCATGGACTCCAATACCCTGGAACTGAGAAGCAGATACTGGGCCATAAGGACCAGGAGTGGAGGAAATACCAATCAACAAAAGGCATCCGCAGGCCAGATCAGTGTGCAGCCTACATTCTCAGTGCAGCGGAATCTCCCTTTTGAAAGAGCAACCGTTATGGCAGCATTCAGCGGGAACAATGAAGGACGGACATCCGACATGCGAACAGAAGTTATAAGAATGATGGAAAGTGCAAAGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGGTCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAGTTGA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_NS', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGACTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCCGCAAGCGATTTGCAGACAATGGATTGGGTGATGCCCCATTCCTTGATCGGCTCCGCCGAGATCAAAAGTCCTTAAAAGGAAGAGGCAACACCCTTGGCCTCGATATCGAAACAGCCACTCTTGTTGGGAAACAAATCGTGGAATGGATCTTGAAAGAGGAATCCAGCGAGACACTTAGAATGACAATTGCATCTGTACCTACTTCGCGCTACCTTTCTGACATGACCCTCGAGGAAATGTCACGAGACTGGTTCATGCTCATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGATTGGACCAGGCGATCATGGAAAAGAACATAGTACTGAAAGCGAACTTCAGTGTAATCTTTAACCGATTAGAGACCTTGATACTACTAAGGGCTTTCACTGAGGAGGGAGCAATAGTTGGAGAAATTTCACCATTACCTTCTCTTCCAGGACATACTTATGAGGATGTCAAAAATGCAGTTGGGGTCCTCATCGGAGGACTTGAATGGAATGGTAACACGGTTCGAGTCTCTGAAAATATACAGAGATTCGCTTGGAGAAACTGTGATGAGAATGGGAGACCTTCACTACCTCCAGAGCAGAAATGAAAAGTGGCGAGAGCAATTGGGACAGAAATTTGAGGAAATAAGGTGGTTAATTGAAGAAATGCGGCACAGATTGAAAGCGACAGAGAATAGTTTCGAACAAATAACATTTATGCAAGCCTTACAACTACTGCTTGAAGTAGAACAAGAGATAAGAGCTTTCTCGTTTCAGCTTATTTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_PA', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACTAACAAGTTTGCTGCAATATGCACACATTTGGAAGTTTGTTTCATGTATTCGGATTTCCATTTCATCGACGAACGGGGTGAATCAATAATTGTAGAATCTGGTGACCCGAATGCACTATTGAAGCACCGATTTGAGATAATTGAAGGAAGAGACCGAATCATGGCCTGGACAGTGGTGAACAGTATATGTAACACAACAGGGGTAGAGAAGCCTAAATTTCTTCCTGATTTGTATGATTACAAAGAGAACCGGTTCATTGAAATTGGAGTAACACGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAACAAAATAAAATCTGAGAAGACACACATTCACATCTTTTCATTCACTGGAGAGGAGATGGCCACCAAAGCGGACTACACCCTTGACGAAGAGAGCAGGGCAAGAATCAAAACTAGGCTTTTCACTATAAGACAAGAAATGGCCAGTAGGAGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAGACAATTGAAGAAAAATTTGAGATTACAGGAACTATGCGCAAGCTTGCCGACCAAAGTCTCCCACCGAACTTCCCCAGCCTTGAAAACTTTAGAGCCTATGTAGATGGATTCGAGCCGAACGGCTGCATTGAGGGCAAGCTTTCCCAAATGTCAAAAGAAGTGAACGCCAAAATTGAACCATTCTTGAGGACGACACCACGCCCCCTCAGATTGCCTGATGGGCCTCTTTGCCATCAGCGGTCAAAGTTCCTGCTGATGGATGCTCTGAAATTAAGTATTGAAGACCCGAGTCACGAGGGGGAGGGAATACCACTATATGATGCAATCAAATGCATGAAGACATTCTTTGGCTGGAAAGAGCCTAACATAGTCAAACCACATGAGAAAGGCATAAATCCCAATTACCTCATGGCTTGGAAGCAGGTGCTAGCAGAGCTACAGGACATTGAAAATGAAGAGAAGATCCCAAGGACAAAGAACATGAAGAGAACAAGCCAATTGAAGTGGGCACTCGGTGAAAATATGGCACCAGAAAAAGTAGACTTTGATGACTGCAAAGATGTTGGAGACCTTAAACAGTATGACAGTGATGAGCCAGAGCCCAGATCTCTAGCAAGCTGGGTCCAAAATGAATTCAATAAGGCATGTGAATTGACTGATTCAAGCTGGATAGAACTTGATGAAATAGGAGAAGATGTTGCCCCGATTGAACATATCGCAAGCATGAGGAGGAACTATTTTACAGCAGAAGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACGGCCTTGCTCAATGCATCCTGTGCAGCCATGGATGACTTTCAGCTGATCCCAATGATAAGCAAATGTAGGACCAAAGAAGGAAGACGGAAAACAAACCTGTATGGGTTCATTATAAAAGGAAGGTCTCATTTGAGAAATGATACTGATGTGGTGAACTTTGTAAGTATGGAGTTCTCACTCACTGACCCGAGACTGGAGCCACACAAATGGGAAAAATACTGTGTTCTTGAAATAGGAGACATGCTCTTGAGGACTGCGATAGGCCAAGTGTCGAGGCCCATGTTCCTATATGTGAGAACCAATGGAACCTCCAAGATCAAGATGAAATGGGGCATGGAAATGAGGCGCTGCCTTCTTCAGTCTCTTCAGCAGATTGAGAGCATGATTGAGGCCGAGTCTTCTGTCAAAGAGAAAGACATGACCAAGGAATTCTTTGAAAACAAATCGGAAACATGGCCAATCGGAGAGTCACCCAGGGGAGTGGAGGAAGGCTCTATTGGGAAAGTGTGCAGGACCTTACTGGCAAAATCTGTATTCAACAGTCTATATGCGTCTCCACAACTTGAGGGGTTTTCGGCTGAATCTAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTGAAGTAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_PB1', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGATGTCAATCCGACTCTACTTTTCCTAAAAATTCCAGCGCAAAATGCCATAAGCACCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTAAACAGAACACACCAATACTCAGAAAAGGGAAAGTGGACGACAAACACAGAGACTGGTGCACCCCAGCTCAACCCGATTGATGGACCACTACCTGAGGATAATGAACCAAGTGGGTATGCACAAACAGACTGTGTTCTAGAGGCTATGGCTTTCCTTGAAGAATCCCACCCAGGAATATTTGAGAATTCATGCCTTGAAACAATGGAAGTTGTTCAACAAACAAGGGTAGATAAACTAACTCAAGGTCGCCAGACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCAACTGCATTGGCCAACACCATAGAAGTCTTTAGATCGAATGGCCTAACAGCTAATGAGTCAGGAAGGCTAATAGATTTCTTAAAGGATGTAATGGAATCAATGAACAAAGAGGAAATAGAGATAACAACCCACTTTCAAAGAAAAAGGAGAGTAAGAGACAACATGACCAAGAAGATGGTCACGCAAAGAACAATAGGGAAGAAAAAACAAAGACTGAATAAGAGAGGCTATCTAATAAGAGCACTGACATTAAATACGATGACCAAAGATGCAGAGAGAGGCAAGTTAAAAAGAAGGGCTATCGCAACACCTGGGATGCAGATTAGAGGTTTCGTATACTTTGTTGAAACTTTAGCTAGGAGCATTTGCGAAAAGCTTGAACAGTCTGGGCTCCCAGTAGGGGGCAATGAAAAGAAGGCCAAACTGGCAAATGTTGTGAGAAAGATGATGACTAATTCACAAGACACAGAGATTTCTTTCACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCGATGATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACATCCTGAGCATGGCACCCATAATGTTCTCAAACAAAATGGCAAGACTAGGGAAAGGGTACATGTTCGAGAGTAAAAGAATGAAGATTCGAACACAAATACCAGCAGAAATGCTAGCAAGCATTGACCTGAAGTACTTCAATGAATCAACAAAGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACAGCATCACTGAGTCCTGGGATGATGATGGGCATGTTCAACATGCTAAGTACGGTCTTGGGAGTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAATATACTGGTGGGATGGGCTCCAATCATCCGACGATTTTGCTCTCATAGTGAATGCACCAAACCATGAGGGAATACAAGCAGGAGTGGACAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTCCTATATAAATAAGACAGGGACATTTGAATTCACAAGCTTTTTTTATCGCTATGGATTTGTGGCTAATTTTAGCATGGAGCTACCCAGCTTTGGAGTGTCTGGAGTAAATGAATCAGCTGACATGAGTATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGACCTGCAACGGCCCAGATGGCTCTTCAATTGTTCATCAAAGACTACAGATACACATATAGGTGCCATAGGGGAGACACACAAATTCAGACGAGAAGATCATTTGAGTTAAAGAAGCTGTGGGATCAAACCCAATCAAAAGTAGGGCTATTAGTATCAGATGGAGGACCAAACTTATACAATATACGGAATCTTCACATTCCTGAAGTCTGCTTAAAATGGGAGCTAATGGATGATGATTATCGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGTCATAAAGAGATTGATTCTGTAAACAATGCTGTGGTAATGCCAGCCCATGGTCCAGCCAAAAGCATGGAATATGATGCCGTTGCAACTACACATTCCTGGATTCCCAAGAGGAATCGTTCTATTCTCAACACAAGCCAAAGGGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAATCTATTCGAGAAATTTTTCCCTAGCAGTTCATATAGGAGACCGGTTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCTAGGGCCCGGATTGATGCCAGGGTCGACTTCGAGTCTGGACGGATCAAGAAAGAAGAGTTCTCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_PB2', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACTGTGGACCATATGGCCATAATCAAAAAGTACACATCAGGAAGGCAAGAGAAGAACCCCGCACTCAGAATGAAGTGGATGATGGCAATGAGATACCCAATTACAGCAGACAAGAGAATAATGGACATGATTCCAGAGAGGAATGAACAAGGACAAACCCTCTGGAGCAAAACAAACGATGCTGGATCAGACCGAGTGATGGTATCACCTCTGGCCGTAACATGGTGGAATAGGAATGGCCCAACAACAAGTACAGTTCATTACCCTAAGGTATATAAAACTTATTTCGAAAAGGTCGAAAGGTTGAAACATGGTACCTTCGGCCCTGTCCACTTCAGAAATCAAGTTAAAATAAGGAGGAGAGTTGATACAAACCCTGGCCATGCAGATCTCAGTGCCAAGGAGGCACAGGATGTGATTATGGAAGTTGTTTTCCCAAATGAAGTGGGGGCAAGAATACTGACATCAGAGTCACAGCTGGCAATAACAAAAGAGAAGAAAGAAGAGCTCCAGGATTGTAAAATTGCTCCCTTGATGGTGGCGTACATGCTAGAAAGAGAATTGGTCCGTAAAACAAGGTTTCTCCCAGTAGCCGGCGGAACAGGCAGTGTTTATATTGAAGTGTTGCACTTAACCCAAGGGACGTGCTGGGAGCAGATGTACACTCCAGGAGGAGAAGTGAGAAATGATGATGTTGACCAAAGTTTGATTATCGCTGCTAGAAACATAGTAAGAAGAGCAGCAGTGTCAGCAGACCCATTAGCATCTCTCTTGGAAATGTGCCACAGCACACAGATTGGAGGAGTAAGGATGGTGGACATCCTTAGACAGAATCCAACTGAGGAACAAGCCGTAGACATATGCAAGGCAGCAATAGGGTTGAGGATTAGCTCATCTTTCAGTTTTGGTGGGTTCACTTTCAAAAGGACAAGCGGATCATCAGTCAAGAAAGAAGAAGAAGTGCTAACGGGCAACCTCCAAACACTGAAAATAAGAGTACATGAAGGGTATGAAGAATTCACAATGGTTGGGAGAAGAGCAACAGCTATTCTCAGAAAGGCAACCAGGAGATTGATCCAGTTGATAGTAAGCGGGAGAGACGAGCAGTCAATTGCTGAGGCAATAATTGTGGCCATGGTATTCTCACAGGAGGATTGCATGATCAAGGCAGTTAGGGGCGATCTGAACTTTGTCAATAGGGCAAACCAGCGACTGAACCCCATGCACCAACTCTTGAGGCATTTCCAAAAAGATGCAAAAGTGCTTTTCCAGAACTGGGGAATTGAATCCATCGACAATGTGATGGGAATGATCGGAATACTGCCCGACATGACCCCAAGCACGGAGATGTCGCTGAGAGGGATAAGAGTCAGCAAAATGGGAGTAGATGAATACTCCAGCACGGAGAGAGTGGTAGTGAGTATTGACCGATTTTTAAGGGTTAGAGATCAAAGAGGGAACGTACTATTGTCTCCCGAAGAAGTCAGTGAAACGCAAGGAACTGAGAAGTTGACAATAACTTATTCGTCATCAATGATGTGGGAGATCAATGGCCCTGAGTCAGTGCTAGTCAACACTTATCAATGGATAATCAGGAACTGGGAAATTGTGAAAATTCAATGGTCACAAGATCCCACAATGTTATACAACAAAATGGAATTTGAACCATTTCAGTCTCTTGTCCCTAAGGCAACCAGAAGCCGGTACAGTGGATTCGTAAGGACACTGTTCCAGCAAATGCGGGATGTGCTTGGGACATTTGACACTGTCCAAATAATAAAACTTCTCCCCTTTGCTGCTGCCCCACCAGAACAGAGTAGGATGCAATTTTCCTCATTGACTGTGAATGTGAGAGGATCAGGGTTGAGGATACTGGTAAGAGGCAATTCTCCAGTATTCAATTACAACAAGGCAACCAAACGACTTACAGTTCTTGGAAAGGATGCAGGTGCATTGACTGAAGATCCAGATGAAGGCACATCTGGGGTGGAGTCTGCTGTCCTGAGAGGATTTCTCATTTTGGGCAAAGAAGACAAGAGATATGGCCCAGCATTAAGCATCAATGAACTGAGCAATCTTGCAAAAGGAGAGAAGGCTAATGTGCTAATTGGGCAAGGGGACGTAGTGTTGGTAATGAAACGAAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SHIV-1157ipd3N4', 'Virus', 'SHIV-1157ipd3N4', 'RNA', 'SIV', 'CAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATCGTCACGGAGACACTCTAGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCGCATGCTGTAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCAGGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCCTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAATCTATACAAATAGAAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTAATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCATCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAAAACTACTTTATTCTGTGCATCAAATGCTAAAGCATATGAGAAAGAAGTACATAACATCTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTTTTGGGAAATGTAACAGAAAATTTTAACATGTGGAAAAATGACATGGTGGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACTTCACTCTGTGTCACTTTAAAGTGTAGTAATTTTACCGGGAAGAGTAATGTTACCTACAAAGGGGATATGGAAGTAAAAAATTGCTCTTTCAATGTAACCACAGAAATAAGAGATAAGAAGCAGAAAGTGTATGCTCTTTTTTATAGACTTGATATAACACCACTTGATGACAACTCTAGTGAGTATATATTAATAAATTGCAATTCCTCAACCATAACACAAGCCTGTCCAAAGGTCAATTTTGACCCAATTCCTATACATTATTGTGCTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGACATTTAATGGGACAGGACCATGCCATAATGTCAGTACAGTACAATGTACACATGGAATTAAGCCAGTGGTATCAACTCAACTACTGTTAAACGGTAGCCTAGCAGAAGGGGAGATAATAATTAGATCTGAAAATCTGACAGACAATGTCAAAACAATAATAGTACACTTTAATGAATCTGTAGAAATTACTTGTACAAGACCCAACAATAATACAAGAAAAAGTATAAGCATAGGACCAGGACAAGCAATCTATGCCACAGGTGATATAATAGGAGACATAAGACAAGCACACTGTAACATTAGTAAAGAAAATTGGAACAAAACTTTACAATGGGTAAGGGGAAAATTAAAAGAACACTTCCCTAATAAAACAATAGTATTTAAACCATCCTCAGGAGGGGATCTAGAAATTACAACACATAGCTTTAATTGTAGAGGAGAATTTTTCTATTGCAACACATCAAAACTGTTTAATAGTACAGACAATAGTACACACATGGGTACAGAAAATAATACAATCATCACAATCCCATGTAGAATAAAACAAATTATAAACATGTGGCAGGAGGTAGGACGAGCAATGTATGCCCCCCCCATAGAAGGAAACATAACATGTAAATCAAATATCACAGGACTACTACTGGTACGTGATGGAGGATGGGACAACAGTACAAATGACACAGAAACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAGGTGGTAGAAGTCAAGCCATTGGGAATAGCACCCACTAAGGCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGACAACTGTTGTCTGGTATAGTGCAGCAGCAAGACAATTTGCTGAGAGCTATAGAGGCGCAACAACATATGTTGCAACTCACAGTCTGGGGCATTAAGCAGCTCCAGGCGAGAGTCCTGGCTATAGAAAGATACCTACAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTGCTGTGCCTTGGAACGACAGTTGGAGTAATAAATCTCAAACAGATATTTGGGAGAACATGACCTGGATGCAGTGGGATAGAGAAATTAGTAGACACACAGACACAATATACAGGTTGCTTGAAGACTCACAAAACCAGCAGGAGAAAAATGAAAAAGATTTATTAGCATTGGACAGTTGGAAAAATTTGTGGAATTGGTTTAGCATAACAAGGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCCTGATAGGTTTGAGAATAATTTTTGCTGTGCTCTCGATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCACTTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGACCGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGACTGTGGAACTCCTGGGACGCAGAGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACTGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAACGCCACAGCCATAGCAGTAAGACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGATTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTCGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGCATATGAATACTCCATGGAGAAACCCAGCTGAAGAGGGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGGAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCTCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAGATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTACTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTACTTAAAGCCCTCTTCAATAAAGCTGCCATTTAGAAGTA'); - - --- ---------------------------- --- Table structure for sequenceAnalysis.ref_aa_sequences --- ---------------------------- -CREATE TABLE sequenceAnalysis.ref_aa_sequences -( - RowId INT IDENTITY(1,1) NOT NULL, - Ref_nt_id INTEGER NOT NULL, - - Name VARCHAR(255) NOT NULL, - Exons VARCHAR(255) DEFAULT NULL, - Start_location INTEGER DEFAULT NULL, - - Sequence TEXT NOT NULL, - Comments TEXT DEFAULT NULL, - - Status bit DEFAULT 1, - - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_ref_aa_sequences PRIMARY KEY (rowId), - CONSTRAINT UNIQUE_ref_aa_sequences UNIQUE (ref_nt_id, name) --- CONSTRAINT fk_ref_aa_sequences_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION - -); - - --- ---------------------------- --- Data for sequenceAnalysis.ref_aa_sequences --- ---------------------------- -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1309-2841', '1309', 'MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2484-5666', '2484', 'VLELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5596-6240', '5596', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6068-6406', '6068', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6407-6712', '6407', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSML*', 'vpR', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6558-6853;9062-9158', '6558', 'METPLREQENSLESSNERSSCISEADASTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6784-6853;9062-9315', '6784', 'MSNHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRKRRWRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTEDSRSPQD*', 'Rev', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6860-9499', '6860', 'MGCLGNQLLIAILLLSVYGIYCTLYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSEVALNVTESFDAWNNTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTANQKPKEQHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPKWNNETWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQQDPALPTREGKERDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQILQPILQRLSATLQRIREVLRTELTYLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9333-10124', '9333', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDIDEEDDDLVGVSVRPKVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1041-2561', '1054', 'MGARNSVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTAETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQKRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLTPTAPPEDPAVDLLKNYMQLGKQQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('218-1741', '218', 'MGARNSVLSGKKADELEKIRLRPNGKKKYMLKHXVWAANELDRFGLAESLLDNKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTADKMPATSRPTAPPSGRGGNYPVQQXGGNYVHLPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGEHQAAMQIIREIINEEAADWDLQHPQPGPLPAGQLREPRGSDIAGTTSTVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGIGGPGQKARLMAEALKEALRPDQLPFAAVQQKGQRRTIKCWNCGKEGHSARQCRAPRRQGCWXCGXTGHVMAKCPERQAGFLGLGPWGKKPRNFPMAQMPQGLIPTAPPEDPAVDLLKNYMKMGRKQRENRERPYKEVTEDLLHLNSLFGEDQ*', 'Gag', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1507-4566', '1507', 'KTGGFFRAWPMGKEAPQFPHGPDASGADTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQGGDRGFAAPQFSLWRRPVVTAYIEEQPVEVLLDTGADDSIVAGIELGPNYTPKVVGGIGGFINTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLKPGKEGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRKANPDVTLIQYMDDILIASDRTDLEHDRVVLQLKELLNGIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPIEATVIKSQDNQWSYKIHQEDKVLKVGKFAKVKNTHTNGVRLLAHVVQKIGKEALVIWGEVPKFHLPVEREIWEQWWTDYWQVTWIPDWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALXDSGPKANIIVDSQYVMGIIAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGEAREVA*', 'Pol', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4496-5140', '4496', 'MEEEKNWIVVPTWRIPERLERWHSLIKHLKYNTKDLQMACYVPHHKVGWAWWTCSRVIFPLRDETHLEVQGYWNLAPEKGWLSTHAVRITWYSRNFWTDVTPDYADTLLHSTYFPCFSEGEVRRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQGEDPTWKQWGRNNRRXLRMAKQNSRRNKQGSSKSPAEGANFPGLAKVLGILA*', 'Vif', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4968-5306', '4968', 'MSDPRERIPPGNSGEETIEEAFEWLNRTVEGINRAAVNHLPRELIFQVWRRSWEYWHDXMGMSESYTKYRYLCLIQKALFVHCKKGCRCLGEXHGAGGWRTGPPPPPPPGLA*', 'vpX', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5308-5613', '5308', 'MAERPPEDEAPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIRILQRALFIHFRSGCAHSRIGQSRGGNPLSTIPPSRDML*', 'vpR', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5755-8418', '5755', 'MGCLGNQLLIALLLVSALEIYCVQYVTVFYGVPAWKNATIPLFCTTRNRDTWGTTQCLPDNDDYSELAIXITEAFDAWNNTVTEQAIEDVWNLFETSIKPCVKLTPLCIAMRCNKTETDRWGLTRNAGTTTTTTTTTTAATPSVAENVINESNPCIKNNSCAGLEQEPMIGCKFNMTGLKRDKRIEYNETWYSRDLICEQSANESESKCYMHHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGKSNRTIISLNKYYNLTMRCRRPGNKTVLPVTIMSGLVFHSQPINERPKQAWCWFGGSWKEAIQEVKETLVKHPRYTGTNDTKKINLTAPAGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDQKXSRWRQQNTRERQKKNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIAEIDWTNNNETNITMSAEVAELYRLELGDYKLVEITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVCHTTVPWPNETLVPNWSNMTWQEWERQVDFLEANITQLLEEAQIQQEKNMYELQKLNSWDIFGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYVQQIPIHKGQEPPTKEGEEGEGGDRGGNRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDWLLRXYQXLQPVLQSLSTTXQRVREVIRIGIAYLQYGWRYFQEAVQAWWKFARETLASAWRDIWETLGRVGRGILAIPRRXRQGXELXLL*', 'Env', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5450-5748;7978-8077', '5450', 'MIDMETPLKEQENSLESCREHSSSISEVDVPTPESANLEEEILYQLYRPLETCYNKCYCKRCCYHCQHCFLKKGLGICYEQHRRRTPKKTKANPLPASNQIPIHKGQEPPTKEGEEGEGGDRGGNRSWPWQI*', 'Tat', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5685-5748;7978-8219', '5685', 'MSSTEEELRKRLRLIHFLHQTTDPYPQGPGTANQRRRRRRRWRQRWQQILALADRIYSFPNPPTDTPLDLAIQQLQGLAIEDLPXPPTSXPEPLNDVAKSP*', 'Rev', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8252-9043', '8252', 'MGGVISKKQCRRGGNLRERLLQARGETYGRLWEGLEEGYSQSXGASGKGLSSLSCEPQKYSEGQYMNTPWRNPAAERAKLGYRQQNMDDVDDEDDDLVXVSVHPRVPLRAMTYKLAIDMSHFIKEKGGLEGIYYNEKRHRILDMYMEKEEGIIPDWQNYTSGPGTRYPMYYGWLWKLVPVDVSDEAQEDETHCLMHPAQTHQWDDPWGEVLAWKFDPELAYSYKAFIKYPEEFGSKSXLSEEEVKRRLTARGLIKMADKKETS*', 'Nef', '4'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('536-2068', '536', 'MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1714-4893', '1711', 'LELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4823-5467', '4823', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5295-5633', '5295', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5634-5939', '5634', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSML*', 'vpR', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5948-6162;8487-8580', '5948', 'MEPVDPRLEPWKHPGSKPKTACTNCYCKKCCFHCQVCFTTKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPSSQPRGDPTGPKEQKKKVERETETDPVHQ*', 'Tat', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6087-6162;8487-8761', '6087', 'MAGRSGDSDEELIRTVRLIKLLYQSNPPPSLEGTRQARRNRRRRWRERQRQIRSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE*', 'Rev', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6179-6424', '6179', 'MQPIQIAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*', 'vpU', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6339-8948', '6339', 'MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWREATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNNMVDQMHEDIISLWDESLKPCVKLTPLCVTLNCTNLNITKNTTNLTSSSWGMMEEGEIKNCSFYITTSIRNKVKKEYALFNRLDVVPVKNTSNTKYRLISCNTSVITQACPKVSFQPIPIHYCVPAGFAILKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDIVIRSEDFTDNVKTIIVQLNESVVINCTRPNNNTRERLSIGPGRAFYARRNIIGDIRQAHCNISRAKWNNTLQQIVIKLREKFRNKTIAFNQSSGGDPEIVMHSFNCGGEFFYCNTAQLFNSTWNVAGGTNGTEGNDIITLQCRIKQIINMWQKVGKAMYAPPITGQIRCSSNITGLLLTRDGGNSTETETEIFRPGGGDMRDNWRSELYKYKVVRIEPIGVAPTRAKRRTVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQNMLRLTVWGIKQLQARVLALERYLRDQQLMGIWGCSGKLICTTSVPWNVSWSNKSVDDIWNNMTWMEWEREIDNYTDYIYDLLEKSQTQQEKNEKELLELDKWASLWNWFDITNWLWYIRLFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLLPASRGPDRPEGTEEEGGERDRDRSGPSVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8782-9573', '8782', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDIDEEDDDLVGVSVRPKVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '3'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2216-5386', '2229', 'VLELWEGGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVKIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNLPIAKVEPVKVTLKPGKVGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVERDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKTNIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5316-5960', '5316', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPERGWLSTYAVRITWYSRNFWTDVTPDYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCKFPRAHRYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGSKPPTKGADFPGLAKVLGILA*', 'Vif', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5788-6126', '5801', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSQSYVKYRYLCLMQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6127-6420', '6140', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCNHSRIGQPGGGNPLSTIPPS*', 'vpR', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6278-6573;8785-8884', '6291', 'METPLREQENSLESSNERSSCILEADATTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNNRLIPNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6504-6573;8785-9041', '6517', 'MSSHEREEELRKRLRLIHLLHQTIDSYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTKGSRSPQD*', 'Rev', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9059-9802', '9072', 'MGGAISMRRSKPAGDLRQKLLRARGETYGRLLGEVEDGSSQSLGGLGKGLSSRSCEGQKYNQGQYMNTPWRNPAEEKEKLAYRKQNMDDIDEEDDDLVGVSVRPKVPLRAMTYKLAIDMSHFIKEKGGLEGIYYSARRHRILDMYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDERHYLMQPAQTSKWDDPWGEVLAWKFDPTLAYTYEAYARYPEELEASQACQRKRLEEG*', 'Nef', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6580-9225', '6593', 'MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSSTTITTAAPTSAPVSEKIDMVNETSSCIAQNNCTGLEQEQMISCKFTMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTSITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIKYIQYGIYVVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQ*THTQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRAYQILQPILQRLSATLRRVREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWRDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '2'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('336-1838', '336', 'MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ*', 'Gag', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5377-5591;7925-7970', '5377', 'MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSQPRGDPTGPKE*', 'Tat', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5516-5591;7925-8199', '5516', 'MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE*', 'Rev', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5608-5856', '5608', 'MQPIPIVAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*', 'Vpu', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5771-8341', '5771', 'MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL*', 'Env', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8343-8963', '8343', 'MGGKWSKSSVIGWPTVRERMRRAEPAADRVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKIEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*', 'Nef', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4587-5165', '4587', 'MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*', 'Vif', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5105-5341', '5105', 'MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFQNWVST*', 'Vpr', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1309-2841', '1309', 'MGARNSVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTAETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPKKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLTPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2484-5666', '2484', 'MLELWERRTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNLPIAKVEPVKVALKPGKVGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKMHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVERDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5596-6240', '5596', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHYKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPERGWLSTYAVRITWYSRNFWTDVTPDYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKNQVPSLQYLALRVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6068-6406', '6068', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6407-6700', '6407', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCNHSRIGQPGGGNPLSTIPPS*', 'vpR', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6558-6853;9065-9164', '6558', 'METPLREQENSLESSNERSSCISEADATTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNNRSIPNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6784-6853;9065-9321', '6784', 'MSSHEREEELRKRLRLIHLLHQTTDPYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTENSRSPQD*', 'Rev', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('25-2175', '25', 'MEDFVRQCFNPMIVELAEKAMKEYGEDLKIETNKFAAICTHLEVCFMYSDFHFINEQGESIIVEPEDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMRRLADQSLPPNFSCIENFRAYVDGFEPNGYIEGKLSQMSKEVNARIEPFLKTTPRPIRLPDGPPCFQRSKFLLMDSLKLSIEDPNHEGEGIPLYDAIKCMRTFFGWKEPSVVKPHEKGINPNYLLSWKQVLEELQDIESEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDISDLKQYDSDEPELRSFSSWIQNEFNKACELTDSIWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRSAIGQVSRPMFLYVRTNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENRSETWPIGESPKGVEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDIGGLYEAIEECLINDPWVLLNASWFNSFLTHALR*', 'PA', '7'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6860-9505', '6860', 'MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNXDYSELAXNVTESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDKWGLTKSSTTTTASTTRTTSAKIDMVNETSSCITHNNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNLTLTTQKLRERHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQIHTQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQILQPILQGLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9339-10130', '9339', 'MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDVDEEDDDLVGVPVMPRVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDMYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTAQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '6'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5688-5759;7992-8225', '5688', 'MSSNEEELRRRLRLIHFLHQTSKYYPEGPGTANQRRRRRRRWRQRWQQILALADRIYSFPDPPANTPLDLAIQQLQRLAIEELPNPPASAPEPLKDIAESP*', 'Rev', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8255-9046', '8255', 'MGGVTSKKQRKXGGNLRERLLQARGETYGRLWDGLEGDYSQSQDGSGRGLXSLSCEPQKYCXGQFMNTPWRNPRAEGAKLDYRQQNMDDVDDDDDDLVGFPVTPXVPXRTMTYKLAIDMSHFIKEKGGLEGIYYSDRRHKILNLYLEKEEGIIPDWQNYTAGPGIRYPMCFGWLWKLVPVDVSDEAQEDEXHCLMHPAQTSQWDDPWGEVLAWKFDPXLAYNYKAFVKHPEEFGSXSGLSEEEVKRRLTARGLLKMADKKETS*', 'Nef', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('19-2292', '19', 'MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSERGRWTKNTETGAPQLNPIDGPLPKDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCIETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLIANESGRLIDFLKDVMKSMDRDEVEITTHFQRKRRVRDNVTKKMVTQRTIGKKKHKLDKRSYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESKSMKLRTQIPAEMLANIDLKYFNDSTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLGVSILNLGQKRYTKTTYWWDGLQSSDDFALIVNAPNHAGIQAGVDRFYRTCKLLGINMSKKKSYINRTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEIKKLWDQTRSKAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDEDYQGRLCNPLNPFVSHKEIESVNNAVMMPAHGPAKNMEYDAVATTHSWVPKRNRSILNTSQRGILEDEQMYQRCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEFAEIMKTCSTIEDLRRQK*', 'PB1', '8'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('28-2307', '28', 'MERIKELRNLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPSLRMKWMMAMKYPITADKRITEMIPERNEQGQTLWSKVNDAGSDRVMISPLAVTWWNRNGPVASTIHYPKIYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQDVIMEVVFPNEVGARILTSESQLTITKEKKEELQNCKISPLMVAYMLERELVRKTRFLPVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLLEMCHSTQIGGTRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTSGSSVKREEEMLTGNLQTLKLTVHEGYEEFTMIGKRATAILRKATRRLIQLIVSGRDEQSIVEAIVVAMVFSQEDCMVKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFLNWGIEPIDNVMGMIGILPDMTPSTEMSMRGVRVSKMGVDEYSNAEKVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLINTYQWIIRNWETIKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKKLTVLGKDAGTLTEDPDEGTAGVESAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN*', 'PB2', '9'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('46-1542', '46', 'MASQGTKRSYEQMETDGERQNATEIRASVGRMIGGIGRFYIQMCTELKLNDYEGRLIQNSLTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPVYKRVDGKWVRELVLYDKEEIRRIWRQANNGDDATAGLTHIMIWHSNLNDTTYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVLELIRMIKRGINDRNFWRGENGRKTRIAYERMCNILKGKFQTAAQKAMMDQVRESRNPGNAEIEDLTFLARSALILRGSVAHKSCLPACVYGPAVASGYDFEKEGYSLVGVDPFKLLQTSQVYSLIRPNENPAHKSQLVWMACNSAAFEDLRVSSFIRGTKVLPRGKLSTRGVQIASNENMDAIVSSTLELRSRYWAIRTRSGGNTNQQRASAGQISTQPTFSVQRNLPFDKTTIMAAFTGNTEGRTSDMRAEIIKMMESARPEEVSFQGRGVFELSDERATNPIVPSFDMSNEGSYFFGDNAEEYDN*', 'NP', '10'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('33-1730', '33', 'MKAKLLVLLCTFTATYADTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISKESWSYIVETPNPENGTCYPGYFADYEELREQLSSVSSFERFEIFPKGSSWPNHTVTGVSASCSHNGKSSFYRNLLWLTRKNGLYPNLSMSYVNNKEKEVLVLWGVHHPPNIGDQRALYHTENAYVSVVSSHYSRRFTPEIAKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPWYAFALSRGFGSGIITSNAPMDECDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSAKLRMVTGLRNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYPKYSEESKLNREKIDGVKLESMGVYQILAIYSTVASSLVLLVSLGAISFWMCSNGSLQCRICI*', 'HA', '11'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('21-1433', '21', 'MNPNQKIITIGSISIAIGIISLMLQIGNIISIWASHSIQTGSQNHTGVCNQRIITYENSTWVNHTYVNINNTNVIAGKDKTSVTLAGNSSLCSISGWAIYTKDNSIRIGSKGDVFVIREPFISCSHLECRTFFLTQGALLNDKHSNGTVKDRSPYRALMSCPLGEAPSPYNSKFESVAWSASACHDGMGWLTIGISGPDNGAVAVLKYNGIITETIKSWKKQILRTQESECVCVNGSCFTIMTDGPSNGAASYKIFKIEKGKVTKSIELNAPNFHYEECSCYPDTGTVMCVCRDNWHGSNRPWVSFNQNLDYQIGYICSGVFGDNPRPKDGEGSCNPVTVDGANGVKGFSYKYGNGVWIGRTKSNRLRKGFEMIWDPNGWTDTDSDFSVKQDVVAITDWSGYSGSFVQHPELTGLDCIRPCFWVELVRGLPKENTTIWTSGSSISFCGVNSDTANWSWPDGAELPFTIDK*', 'NA', '18'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('27-56;529-864', '27', 'MDSHTVSSFQDILMRMSKMQLGSSSGDLNGMITQFESLKLYRDSLGEAVMRLGDLHSLQHRNGKWREQLGQKFEEIRWLIEEVRHKLKTTENSFEQITFMQALQLLFEVEQEIRTFSFQLI*', 'NS2', '20'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('27-719', '27', 'MDSHTVSSFQVDCFLWHVRKQVADQGLGDAPFLDRLRRDQKSLKGRGSTLGLNIETATCVGKQIVERILKEESDEAFKMTMASALASRYLTDMTIEEMSRDWFMLMPKQKVAGPLCVRMDQAIMDKNIILKANFSVIFDRLENLTLLRAFTEEGAIVGEISPLPSLPGHTNEDVKNAIGVLIGGLEWNDNTVRVSETLQRFAWRSSNETGGPPFTPTQKRKMAGTIRSEV*', 'NS1', '20'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('26-646', '26', 'MSLLTEVETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYRKLKREITFHGAKEIALSYSAGALASCMGLIYNRMGAVTTESAFGLICATCEQIADSQHKSHRQMVTTTNPLIRHENRMVLASTTAKAMEQMAGSSEQAAEAMGGC*', 'M1', '19'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('26-52;742-1008', '26', 'MSLLTEVETPIKNEWGCRCNDSSDPLVVAASIIGIVHLILWIIDRLFSKSIYRIFKHGLKRGPSTEGVPESMREEYREEQQNAVDADDGHFVSIELE*', 'M2', '19'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('221-1744', '221', 'MGARNSVLSGKXADELEKIRLRPGGXKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVXETGTADKMPVTSRPTAPPSGRGGNYPVQQVGGNYTHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCXGEHQSAMQIIREIINEEAADWDLQHXQPGPIPAGQLRDPRGSDIAGTTSTVEEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLXGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEALTPGQLPFAAVQQRGQRKTIKXWNCGKEGHSARQCRAPRRQGCWKCGKTGHVMAKCPERQAGFLGLGPWGKKPRNFPMAQIPQGLTPTAPPEDPAVDLLRNYMKMGRRQRENRERPYKEVTEDLLHLNSLFGEDQ*', 'Gag', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1501-4569', '1501', 'MPRETGGFFRAWPMGKEAPQFPHGPDTSGVDTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQGGDGGFAAPQFSLWRRPVVTAYIEEQPXEVLXDTGADDSXVAGIELGPNYTPKIVGXIGGFXNTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLKPGKDGPKLRQWXLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRKANPDVTLIQXMDDILIASDRTDLEHDRVVLQLKELLNSMGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPXKETWTXNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEXNKIILSQEQEGCXYQEGXPLEATVIKSQDNQWSYKIHQEDXILKVGKFAKIKNTHTNGVRLLAHVVQKIGKEAIVIWGQVPKFHXPVEREIWEQWWTDYWQVTWIPEWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSKEGKAGYVTDRGRDRTKPLXQTTNQQAEXEAFHLALADSGPKANIIVDSQYVMGIIAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEXDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGXVEAMNHHLKTQIDRXREQANSIXTIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGEAREVA*', 'Pol', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4499-5143', '4499', 'MEEEKSWIAVPTWRIPGRLEKWHSLIKHLKYNTKDLQKACYVPHHKVGWAWWTCSRXIFPLRDESHLEVQGYWNLTPEKGWLSTYAVRITWYSRNFWTDVTPDYADTLLHGTYFPCFSEGEVRRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQGEDPTWKQWRGNSRRGLRLARKNSRRNKQGSSESFAEGVNFPGLAKVLGILA*', 'Vif', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4971-5309', '4971', 'MSDPRERIPPGNSGEETVGEAFDWLERTVEEINRAAVNHLPRELIFQVWRRSWEYWHDEIGMSASYTKXRYLCLIQKALFMHCKKGCRCLGGEHGAGGWRPGPPPPPPPGLA*', 'vpX', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5311-5616', '5311', 'MTERPPEDEAPQREPWDEWVVEVLEEVKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIKILQRALFIHFRGGCNHSRIGHSGGGNPLSTIPPSRGVL*', 'vpR', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5462-5752;7985-8080', '5462', 'METPLKEQESSLKSSREHSSSISEVDATTPESATLEEEILSQLYRPLEACYNKCYCKKCCYHCQHCFLKKGLGICYEQQRRRTPKKTKANTFSASNKSLSRRARNRQPKKEKKETVETEVATDLGLGR*', 'Tat', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5688-5752;7985-8222', '5688', 'MSSNEEELRRRLRLIHFLHQTSPYPEGPGTANQRRRRRRRWRQRWQQILALADRIXSFPDPPANTPLELAXQQLQRLAIEEXPDPPASAPEPLKDTAXSP*', 'Rev', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5758-8421', '5758', 'MGCLGNQLLIALLLLSALGIXCVQYVTVFYGVPAWKNATIPLFCATKNRDTWXTTQCLPDNDDYSELAINVTEAFDAWDNTVTEQAIEDVWNLFQTSIKPCVKLTPLCIAMRCNKTETDRWGLTGKPTTTASTTTKTTSKPSVITAXVINEGDPCIKNNSCAGLEXXPMIGCKFNMTGLRKDKQREYNETWYSRDIVCEQNSNEHETASKCYMNHCNTSVIRESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFEPNCTKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRSNRTIISLNKYYNLTIRCRRPGNKTVLPVTIMSGLVFHSQPINEXPKQAWCWFGGNWKXAIREVKETLVKHPRYTGTNNTEKINXTAPAGGDPEVTFMWTNCRGEFLYCKMNWFXNWVDETXGFRWXXQNPKEKKRRNYVPCHIRQVXXTWHRVGKNVYLPPREGDLTCNSTVTSLIAEIDWIDKNETNITMSAEVAELYRLELGDYKLVXITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTXNLQTRVTAIEKYLKDQXQLNSWGCAFRQVCHTTVPWPNDTLXPNWXNMTWQEWERQVDFLEAXITQLXEEAQIQQEKXMYELQKLNSWDIFGNWFDLTSWIXYIQYGVLIVLGVIGLRIVIYVXQMLARLRQGYRPVFSSPPVYVQQIPIQKGQEPPTKEGEEGDGGDRGGNRSWPWQIEXIHFLIRQLIRLLSWXFNSCRDWLLRSXQILQPVLQSLSRILQXVREVIRVEITYLQYGWRYFQEAAQXWWKFARETLASAWGDLWETLGRVGRRLLAIPRRIRQGLXLTLL*', 'Env', '12'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1309-2841', '1309', 'MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2484-5666', '2484', 'VLELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5596-6240', '5596', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6068-6406', '6068', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6407-6712', '6407', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSML*', 'vpR', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6558-6853;9062-9158', '6558', 'METPLREQENSLESSNERSSCISEADASTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6784-6853;9062-9315', '6784', 'MSNHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRKRRWRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTEDSRSPQD*', 'Rev', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6860-9499', '6860', 'MGCLGNQLLIAILLLSVYGIYCTLYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSEVALNVTESFDAWNNTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTANQKPKEQHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPKWNNETWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQQDPALPTREGKERDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQILQPILQRLSATLQRIREVLRTELTYLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9333-9569', '9333', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQVSFYKRKGGTGRDLLQCKKT*', 'Nef', '13'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('221-1744', '221', 'MGARNSVLSGKXADELEKIRLRPGGXKKYMLKHVXWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVXETGTADKMPXTSRPTAPPSGRGGNYPVQQVGGNYTHLXLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMXNCXGEHQSAMQIIREIINEEAADWDLQHXQPXPIPAGQLRDPRGSDIAGTTSTVEEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDXFYKSXRAEQTDPAVKNWMTQTLLIQNANPDCKLVLXGLGMNPTLEEMLTACQGVGGPGQKARLMAEALXEALTPGQLPFAAVQQRGQRKTIKXWNCGKEGHSARXCRAPRRQXCWKCGKTGHVMAKCPXRQAGFLGLGPWGKKPRNFPMAQIPQGLTPTAPPEDPAVDLLRNXMKMGRRQRENRERPYKEVTEDLLHLNSLFGEDQ*', 'Gag', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1501-4569', '1501', 'MPRXTGGFFRAWPMGKEAPQFPHGPDTSGVDTNCSPRGSSCGSTEELXEDGQKAEGEQRETLQGGDGGFAAPQFSLWRRPVVTAXIEEQPXEVLLDTGADDSXVAGIELGPNYTPKIVGXIGGFINTKEYKDVKIKVLGXXIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKXEPIKVTLKPGKDGPKLRQWXLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRKANPDVTLIQXMDDILIASDRTXLEHDRVVLQLKELLNSMGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPXXETWTXNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEXNKIILSQEQEGCXYQEGXPLEATVIKSQDNQWSYKIHQEDXILKVGKFAKIKNTHTNGVRLLAHVVQKIGKEAIVIWGQVPKFHXPVEREXWEQWWTDYWQVTWIPEWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSKEGKAGYVTDRGRDRTKPLEQTTNQQAEXEAFHLALADSGPKANIIVDSQYVMGIIAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEXDHLXSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGXAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLXTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGXVEAMNHHLKTQIDRXREQANSIXTIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKXLDSGSHLEDTGEAREVA*', 'Pol', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4499-5143', '4499', 'MEEEKXWIAVPTWRIPGRLEKWHSLIKHLKYNTKDLQKACYVPHHKVGWAWWTCSRXIFPLRDXSHLEVQGYWNLTPEKGWLSTYAVRITWYSXNFWTDVTPDYADTLLHGTYFPCFSEGEVRRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQGEXPTWKQWRGNXRRGLRLAXKNSRRNKQGSSESFAEGVNFPGLAKVLGILA*', 'Vif', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4971-5309', '4971', 'MSDPRERXPPGNSGEEXVGEAFDWXERTVEEINRAAVNHLPRELIFQVWRRSWEYWHDEIGMSASYTKXRYLCLIQKALFMHCKKGCRCLGGEHGAGGWRPGPPPPPPPGLA*', 'vpX', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5311-5616', '5311', 'MTERPPEDEAPQREPWDEWVVEVLEEVKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIXILQRALFIHFRGGCNHSRIGHSGGGNPLSTIPPSRGVL*', 'vpR', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5462-5751;7984-8080', '5462', 'METPLKEQESSLXSSREHSSSISEVDATTPESATLEEEILSQLYRPLEACYNKCYCKKCCYHCQHCFLKKGLGICYEQQRRRTPKKTKANTFSASNKSLSRRARNRQPKKEKKETVETEVATDLGLGR*', 'Tat', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5688-5759;7992-8222', '5688', 'MSSNEEELRRRLRLIHFLHQTSKYPEGPGTANQRRRRRRRWRQRWQQILALADRIXSFPDPPANTPLELAXQQLQXLAIEEXPDPPASAPEPLKDTAXSP*', 'Rev', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5758-8421', '5758', 'MGCLGNQLLIALLLLSALGISCVQYXTVFYGXPAWKNATXPLFCAXXNRXTWXTTQCLPDNDDYSELAINVTEAFDAWDNTVTEQAIEDVWNLFQTSIKPCVKLTPLCIAMRCNKTETDRWGLTGKPTTTASTTTKTTSKPSVITAXVINEGDPCIKNNSCAGLEXXPMIGCKFNMTGLRKDKQREYNETWYSRDIVCEQNSNEXETASKCYMNHCNTSVIRESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFEPNCTKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRSNRTIISLNKYYNLTXRCRRPGNKTVLPVTIMSGLVFHSQPINEXPKQAWCWFGGNWKXXIREVKETLVKHPRYTGTNNTEKINXTAPAGGDPEVTFMWTNCRGEFLYCKMNWFXNWVDETXGFRWNXQNPKEKKRRNYVPCHIRQVXXTWHXVGKNVYLPPREGDLTCNSTVTSLIAEIDWIDKNETNITMSAEVAELYRLELGDYKLVXITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTXNLQTRVTAIEKYLKDQXHLNSWGCAFRQVCHTTVPWPNDTLXPNWXNMTWQEWERQVDFLEAXITQLXEEAQIQQEKXMYELQKLNSWDIFGNWFDLTSWIXYIQYGVLIVLGVIGLRIVIYVXXMLARLRQGYRPVFSSPPVYVQQIPIQKGQEPPTKEGEEGDGGDRGGNRSWPWQIEXIHFLIRQLIRLLSWXFNSCRXWLLRSXQILQPVLQSLSRILQXVREVIRVEITYLQYGWRYFQEAAQXWWKFARETLASAWGDLWETLGRVGRRLLAIPRXIRQGLXLTLL*', 'Env', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8255-9046', '8255', 'MGGVTSKKQRKHGGNLRERLLQARGETYGRLWDGLEGDYSQSQDGSGRGLSSLSCEPQKYCEGQFMNTPWRNPRAEGAKLDYRQQNMDDVDDDDDDLVGFPVTPKVPLRTMTYKLAIDMSHFIKEKGGLEGIYYSDRRHKILNLYLEKEEGIIPDWQNYTAGPGIRYPMCFGWLWKLVPVDVSDEAQEDEAHCLMHPAQTSQWDDPWGEVLAWKFDPELAYNYKAFVKHPEEFGSSSGLSEEEVKRRLTARGLLKMADKKETS*', 'Nef', '14'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9099-9890', '9099', 'MGGAISKKQHRRGGNLRERLLRARGETYGRLWEGLEEGYSQSLGASGKGLSSLSCEPQKYSEGQYMNTPWRNPTAEKAKLGYKQQNMDDVDDEDDDLVGVSVHPKVPLRAMTYKLAIDMSHFIKEKGGLEGIYYNEKRHRILDMYMEKEEGIIPDWQNYTLGPGTRYPMYFGWLWKLVPVDVSDEAQEDETHCLVHPAQTHQWDDPWGEVLAWKFDPELAYSYKAFIKYPEEFGSKSGLSEEEVKRRLTARGIYKMADKRETS*', 'Nef', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1631-4642', '1631', 'FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSPSEAGADRQGTVSFNFPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*', 'Pol', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('309-1841', '309', 'MGARNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCRKILSVLAPLMPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGSRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKSYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5860-8499', '5860', 'MGCLGNQLLIAILLLSVYGIYGTLYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPNCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTANQTSKEQHKRNYVPCHIRQIINTWHKVGRNVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTNVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPEWNNETWQEWERKVDFLEENITALLEEAQIQQERNMYELQKLNSWDVFGNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLVRQLIRLLTWLFSNCRTLLSRVYQVLQPILQRLSATLQRIREVLRTELTYLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8333-9124', '8333', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDIDEEDDDLVGVSVRSKVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1484-4666', '1484', 'VLELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEEQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQIPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGIPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5784-5852;8064-8315', '5784', 'MSNHEREEELRKRLRLIHLLHQTPYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPGPSTDTPLDLAIQQLQNLAIESIPGPPTNTPEALCDPTEDSRSPQD*', 'Rev', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5558-5854;8064-8159', '5558', 'METPLREQENSLESSNERSSCISEADASTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4596-5240', '4596', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWNLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGADFPGLAKVLGILA*', 'Vif', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5407-5712', '5407', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSML*', 'VpR', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5068-5406', '5068', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'Vpx', '15'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1799-2095', '1799', 'PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF', 'Protease', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2096-3775', '2096', 'PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL', 'Pol p66 RT', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('3416-3775', '3416', 'YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL', 'RNAse H', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('3776-4642', '3776', 'FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*', 'Integrase', '5'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-1701', '1', 'MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETPSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADTYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI*', 'HA', '29'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('221-1744', '221', 'MGARXSVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDXFGLAESLLENKEGCQXILSXLAPLVPTGSENLKSXYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTADKMPATSRPTAPPSGRGGNYPVQQVGGNYTHLPLSPRTLNAWVKLXEEKKFGAEVVPGFXALSEGCXPYDINQMLNCXGEXQSAMQIIREIINEEAADWDLQHPQPGPIPAGXLRDPRGSDIAGTTSTVEEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKXGXKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGXGGPGQKARLMAEALKEALTPGQLPFAAVQQRGQRKTIKXWNCGKEGHSARQCRAPRRQGCWKCGXTGHVMAKCPERQAGFLGLGPWGKKPRNFPMAQIPQGLTPTAPPEDPAVDLLKNYMRMGRRQRXNRERPYKXVTEDLLHLNSLFGEDQ*', 'Gag', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-2274', '1', 'MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK*', 'PB1', '35'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-2280', '1', 'MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPALRMKWMMAMRYPITADKRIMDMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVIMEVVFPNEVGARILTSESQLAITKEKKEELQDCKIAPLMVAYMLERELVRKTRFLPVAGGTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLLEMCHSTQIGGVRMVDILRQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIESIDNVMGMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKMEFEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSSLTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN*', 'PB2', '36'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-2151', '1', 'MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPNFPSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPNIVKPHEKGINPNYLMAWKQVLAELQDIENEEKIPRTKNMKRTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPEPRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECLINDPWVLLNASWFNSFLTHALK*', 'PA', '34'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-1410', '1', 'MNPNQKIITIGSVCMTIGMANLILQIGNIISIWISHSIQLGNQNQIETCNQSVITYENNTWVNQTYVNISNTNFAAGQSVVSVKLAGNSSLCPVSGWAIYSKDNSVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPIGEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNILRTQESECACVNGSCFTVMTDGPSNGQASYKIFRIEKGKIVKSVEMNAPNYHYEECSCYPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGSCGPVSSNGANGVKGFSFKYGNGVWIGRTKSISSRNGFEMIWDPNGWTGTDNNFSIKQDIVGINEWSGYSGSFVQHPELTGLDCIRPCFWVELIRGRPKENTIWTSGSSISFCGVNSDTVGWSWPDGAELPFTIDK*', 'NA', '31'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-1497', '1', 'MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDS*', 'NP', '32'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6602-9265', '6602', 'MGCLGNQLLIALLLVSVLEICCVQYVTVFYGVPAWKNATIPLFCATRNRDTWGTTQCLPDNDDYSELAVNITEAFDAWNNTVTEQAIEDVWNLFETSIKPCVKLTPLCIAMRCNKTETDRWGLTGRAETTTTAKSTTSTTTTTVTPKVINEGDSCIKNNSCAGLEQEPMIGCKFNMTGLKRDKKIEYNETWYSRDLICEQPANGSESKCYMQHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGNSNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINERPKQAWCRFGGNWSEAIQEVKETLVKHPRYTGTNDTRKINLTAPAGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDQNSNRWKQQKKPEQQKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIAEIDWINNNETNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQHELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVCHTTVPWPNDSLVPNWDNMTWQEWEGKVDFLEANITQLLEEAQIQQEKNMYELQKLNSWDIFGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSPPPAYVQQIPIHKDQEPPTKEGEEGEGGDRGGSRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDWLLRIYQILQPVLQRLSRTLQRVREVIRIEITYLQYGWSYFQEAAQAWWKFARETLASAWRDIWETLGRVGRGILAIPRRVRQGLELALL*', 'Env', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6155-6460', '6155', 'MAERPPEDEAPQREPWDEWVVEVLEEIKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIRILQRALFIHFRSGCAHSRIGQSRGGNPLSTIPPSRAML*', 'Vpr', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6297-6595;8825-8924', '6297', 'MIDMETPLKEQENSLESYREHSSSISEVDVPTPESANLEEEILSQLYRPLEPCYNKCYCKRCCYHCQHCFLKKGLGICYEQHRRRTPKKTKTNPLPASNNRSLSTRTRNRQPKKEKKEKVETEVAADLGLGR*', 'Tat', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6532-6595;8825-9066', '6532', 'MSSTEEELRKRLRLIHFLHQTTDPYPQGPGTANQRRRRRRRWRQRWQQILALADRIYSFPNPPTDTPLDLAIQQLQGLAIEDLPDPPTSAPETLKDAAKSS*', 'Rev', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5815-6153', '5815', 'MSDPRERIPPGNSGEETIEEAFEWLNRTVEGINRAAVNHLPRELIFQVWQRSWEYWHDEMGMSESYTKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRTGPPPPPPPGLA*', 'Vpx', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5343-5987', '5343', 'MEEEKNWIVVPTWRIPERLERWHSLIKHLKYNTKDLQMACYVPHHKVGWAWWTCSRVIFPLRDKTHLEVQGYWNLTPEKGWLSTHAVRITWYSRNFWTDVTPDCADTLLHSTYFPCFSEGEVQRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQREDPTWKQWRGNNRRGLRMAKQNSRRNKQGSSKSPAEGANFPGLAKVLGILA*', 'Vif', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2354-5413', '2354', 'KTGGFFRVWPMGKEAPQFPHGPDASGADTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQGGDRGFAAPQFSLWRRPVVTAYIEEQPVEVLLDTGADDSIVTGIELGPNYTPKIVGGIGGFINTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNFPIAKVEPIKVTLKPGKEGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRKANPDVTLIQYMDDILIASDRTDLEHDRVVLQLKELLNGIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPIEATVIKSQDNQWSYKIHQEDKVLKVGKFAKVKNTHTNGVRLLAHVVQKIGKEALVIWGEVPKFHLPVEREIWEQWWTDYWQVTWIPDWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALADSGPKANIIVDSQYVMGIVAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDRCHQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGEAREVA*', 'Pol', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1065-2588', '1065', 'MGARNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLDNKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTADKMPATSRPTAPPSGRGGNYPVQQVGGNYVHLPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGEHQAAMQIIREIINEEAADWDLQHPQPGPLPAGQLREPRGSDIAGTTSTVEEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGIGGPGQKARLMAEALKEALRPDQLPFAAVQQKGQRRTIKCWNCGKEGHSARQCRAPRRQGCWGCGKTGHVMAKCPERQAGFLGFGPWGKKPRNFPMAQMPQGLTPTAPPEDPAVDLLKNYMKMGRKQRENRERPYKEVTEDLLHLNSLFGEDQ*', 'Gag', '16'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5462-5751;7984-8083', '5462', 'METPLKEQESSLESSREHSSSISEVDATTPESATLEEEILSQLYRPLEACYNKCYCKKCCYHCQHCFLKKGLGXCYEQQRRRTPKKTKANTFSASNNRSLSRRARNRQPKKEKKKTVEAEVATDLGLGR*', 'Tat', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4971-5309', '4971', 'MSDPRERIPPGNSGEETVGEAFDWLERTVEEINRAAVNHLPRELIFQVWRRSWEYWHDEIGMSASYTKYRYLCLIQKALFMHCKKGCRCLGGEHGAGGWRSGPPPPPPPGLA*', 'Vpx', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5311-5616', '5311', 'MTERPPEDEAPQREPWDEWVVEVLEEVKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIRILQRALFIHFRGGCNHSRIGHSGGGNPLSTIPPSRGVL*', 'Vpr', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4499-5143', '4499', 'MEEEKSWIAVXTWRIPGRLEKWHSLIKHLKYNTKDLQKACYVPHHKVGWAWWTCSRVIFPLRDESHLEVQGYWSLTPEXXWLSTYAXXITWYSRNFWTDVTPDXADTLLHGTYFPCFSEGEVRRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQGEDPTWKQWRGNSRRGLRLARKNSRRNKQGSSESFAEGVNFPGLAKVLGILA*', 'Vif', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8258-9043', '8258', 'MGGVTSKKQRKHGGNLRERLLQARGETYGRLWDGLEGEYSQSQDVSGKGLSSLSCEP:::::::::::::RNPTAERAKLDYRQQNMDDVDDDX:XXFPVTPRVPLRTMTYKLAIDMSHFIKEKGGLEGIYYSDRRHRILNLYLEKEEGIIPDWQNYTAGPGIRYPMCFGWLWKLVPVDVSDEAQEDEAHCLMHPAQTSQWDDPWGEVLAWKFDPELAYNYMAFVKHPEEFGSRSGLSEEEVKRRLTARGLLKMADKKETS*', 'Nef', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1501-4569', '1501', 'MPRETGGFFRAWPMGKEAPQFPHGPDTSGVDTNCSPRGSSCGSTEELHEDGQKAEGXQRETLQGXDGGFAAPQFSLWRRPVVTAYIEEQPVEVLLDTGADDSXVAGIELGPNYTPKIVGXIGGFINTKEYKDVKIKVLGXVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLKPGKDGPKLRQWPLSKEKIIALXEICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQXGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVXPQGWKGSPAIFQHXMRNVLEPFRKANPDVXLIQYMDXILIASXRTDLEHDRVVLQLKELLNSMGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQXLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEEXKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAXVVQKIGKEAIVIWGQVPKFHLPVEREIWEQWWTDYWQVTWIPEWDFVSTPPLVRXVFNLVKEPIQGAETFYVDGSCNRQSKEGKAGYVTDRXRDRTKXLEQTTNQQAXLEAFYLALADSGPXANIIXDSQYVMGIIAGQPXESESRLVNQIIEEMIKKEAIYVXWVPAHKGIGGNQEVDHLXSQGIRQVLFLEKIEPAQEEHEKYHSNVKXLVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWAXIEQTFGVPYNPQSXGVVEAMNHHLKTQIDRIREQANSIETIVLMAXHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSXLEDTGEAREVA*', 'Pol', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5758-8424', '5758', 'MGCLGNQLLIALLLLSALGISCVQYVTVFYGIPAWKNATVPLFCATENRDTWGTTQCLPDNNDYSELAINVTEAFDAWDNTVTEQAIEDVWNLFETSIKPCVKLTPLCIAMRCNKTETDRWGLTGKPVTTTTSTTTKSTSKPPALTAKVINENDPCIXTDNCAGLEQEPMISCKFNMTGLXRDKKKEYNETWYSRDIVCEQNNNGNENESKCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFEPNCTKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRSNRTIISLNKYYNLTMSCRRPGKKIVLPVTITSGLIFHSQTINKRPKQAWCWFXGXWKGXIREVKETLVKHPRYTGTNDTXXINLTAPXGGDXEVTFMWTNCRGEFLYCKMNWFLNWVDETNGFRW::QXXKEKKRRNYVPCHIRQVIXTWHXVGKNVYLPPREGXXTCNSTVTSLIAEIDWIDKNETNITMSAEVAELYRLELGDYKLVEITPIGLAPTSXRRYTTTGASRNKRGVFVLGFLGFLXTAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAHLNSWGCAFRQVCHTTVPWPNDTLMPNWDNMTWQEWERQVDFLEANITQLLEEAQIQQEENMYELQKLNSWDIFGNWFDLTSWIKYIQYGVLIVLGVIGLRIVIYVVQMLARLRQGYRPVFSSPPVYVQQIPIQKGQEPPTKEGEEEDGGGRGGNRSWPWQIEYIHFLIRQLIRLLTWLFNSCRDWLLRSCQILQPVLQSLSRTLQRVREVIRVEIAYLQYGWRYFQEAAQAWWKFARETLASAWRDLWETLGRVGRGILAIPRRIRQGLELTLL*', 'Env', '17'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('536-2068', '536', 'MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1714-4893', '1714', 'LELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4823-5467', '4823', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5295-5633', '5295', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5634-5945', '5634', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSMRML*', 'vpR', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5954-6168;8463-8508', '5954', 'MEPVDPRLEPWKHPGSRPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSHFRGEPTGPKE*', 'Tat', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6093-6168;8463-8737', '6093', 'MAGRSGDSDEELIRTVRLIKLLYQSNPPPTSEGSRQARRNRRRRWRERQRQIHSISDRILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTPGTQRVGSPQILVESPTVLESGTKE*', 'Rev', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6185-6430', '6185', 'MQSIQIEIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLINRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*', 'vpu', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6345-8948', '6345', 'MRVKEKYQHLWRWGWRWGIMLLGMLMICSATEKLWVTVYYGVPVWKEAKTTLFCASNAKAYEKEVHNIWATHACVPTDPNPQEIVLGNVTENFNMWKNDMVDQMHEDIISLWDQSLKPCVKLTSLCVTLKCSNFTGKSNVTYKGDMEVKNCSFNVTTEIRDKKQKVYALFYRLDITPLDDNSSEYILINCNSSTITQACPKVNFDPIPIHYCAPAGYAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENLTDNVKTIIVHFNESVEITCTRPNNNTRKSISIGPGQAIYATGDIIGDIRQAHCNISKENWNKTLQWVRGKLKEHFPNKTIVFKPSSGGDLEITTHSFNCRGEFFYCNTSKLFNSTDNSTHMGTENNTIITIPCRIKQIINMWQEVGRAMYAPPIEGNITCKSNITGLLLVRDGGWDNSTNDTETFRPGGGDMRDNWRSELYKYKVVEVKPLGIAPTKAKRRVVEREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQDNLLRAIEAQQHMLQLTVWGIKQLQARVLAIERYLQDQQLLGIWGCSGKLICTTAVPWNDSWSNKSQTDIWENMTWMQWDREISRHTDTIYRLLEDSQNQQEKNEKDLLALDSWKNLWNWFSITRWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQTHLPLPRGADRPEGIEEEGGERDRDRSIRLVTGSLALIWDDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWEALKYWWNLLLYWSQELKNSAVSLLNATAIAVRQYGWSYFHEAVQAVWRSATETLAGAWGDLWEILRRGGRWILAIPRRIRQGLELTLL*', 'Env', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8782-9573', '8782', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRFLGEVEDGYSQSPGGLDKGSSSLSCEGQKYNQGQHMNTPWRNPAEEGEKLAYRKQNMDDIDEEDDDLVGVSVRPKVLLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVDVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '37'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6912-7121', '6912', 'MGSIVLYMSQSFMVYQLGGMRQFPSFVQPRIGILGEQLSAYQIMVIIQKWPLMLQKALMPGIIQSQNRQ*', 'Env ARF 1', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6784-7005', '6784', 'MSNHEREEELRKRLRLIHLLHQTSKYGMSWESAAYRHLAFKCLWDLLYSICHSLLWCTSLEECDNSPLLCNQE*', 'Env ARF 10', '1'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-660', '1', 'MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEESSETLRMTIASVPTSRYLSDMTLEEMSRDWFMLMPRQKIIGPLCVRLDQAIMEKNIVLKANFSVIFNRLETLILLRAFTEEGAIVGEISPLPSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRNCDENGRPSLPPEQK*', 'NS1', '33'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-366', '1', 'MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFMQALQLLLEVEQEIRAFSFQLI*', 'NS2', '33'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-759', '1', 'MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHRQMATTTNPLIRHENRMVLASTTAKAMEQMAGSSEQAAEAMEVANQTRQMVHAMRTIGTHPSSSAGLKDDLLENLQAYQKRMGVQMQRFK*', 'M1', '30'); -INSERT INTO sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-294', '1', 'MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE*', 'M2', '30'); - - --- ---------------------------- --- Table structure for sequenceanalysis.drug_resistance --- ---------------------------- -CREATE TABLE sequenceanalysis.drug_resistance -( - RowId INT IDENTITY(1,1) NOT NULL, - --virus_strain VARCHAR(45) NOT NULL, - ref_nt_id INTEGER NOT NULL, - class VARCHAR(45) DEFAULT NULL, - --protein VARCHAR(45) NOT NULL, - ref_aa_id INTEGER NOT NULL, - aa_position INTEGER NOT NULL, - aa_insert_index INTEGER NOT NULL, - reference_aa VARCHAR(2) NOT NULL, - mutant_aa VARCHAR(2) NOT NULL, - drug VARCHAR(45) NOT NULL, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_drug_resistance PRIMARY KEY (rowId) - ---NOTE: depreciated --- CONSTRAINT fk_drug_resistance_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_drug_resistance_ref_aa_id FOREIGN KEY (ref_aa_id) --- REFERENCES sequenceanalysis.ref_aa_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION -); - --- ---------------------------- --- Records of virus_resistance --- ---------------------------- -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '23', '0', 'L', 'I', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '30', '0', 'D', 'N', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'A', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'A', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'A', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'V', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'V', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'V', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'M', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'M', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'M', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'M', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '50', '0', 'I', 'L', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '50', '0', 'I', 'V', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '50', '0', 'I', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '50', '0', 'I', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '53', '0', 'F', 'L', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '53', '0', 'F', 'L', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '53', '0', 'F', 'L', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '53', '0', 'F', 'L', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '76', '0', 'L', 'V', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '76', '0', 'L', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '76', '0', 'L', 'V', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '76', '0', 'L', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'L', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'D', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'D', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'S', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'S', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'S', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'S', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'V', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'V', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'V', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'V', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'I', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'I', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'I', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'I', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'R', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'R', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '219', '0', 'K', 'Q', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '219', '0', 'K', 'Q', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '219', '0', 'K', 'E', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '219', '0', 'K', 'E', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '74', '0', 'L', 'V', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '74', '0', 'L', 'V', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '74', '0', 'L', 'I', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '74', '0', 'L', 'I', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'T', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'T', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'T', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'M', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'M', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'M', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'M', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '115', '0', 'Y', 'F', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '115', '0', 'Y', 'F', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'I', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'I', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'I', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'I', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '77', '0', 'F', 'L', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '77', '0', 'F', 'L', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '77', '0', 'F', 'L', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '77', '0', 'F', 'L', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '116', '0', 'F', 'Y', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '116', '0', 'F', 'Y', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '116', '0', 'F', 'Y', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '116', '0', 'F', 'Y', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '98', '0', 'A', 'G', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '98', '0', 'A', 'G', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '98', '0', 'A', 'G', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '98', '0', 'A', 'G', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '100', '0', 'L', 'I', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '100', '0', 'L', 'I', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '100', '0', 'L', 'I', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '100', '0', 'L', 'I', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'E', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'E', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'E', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'E', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'P', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'P', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'P', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'P', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'N', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'N', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'N', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'S', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'S', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'S', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'A', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'A', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'A', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'M', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'M', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'M', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '108', '0', 'V', 'I', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '108', '0', 'V', 'I', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '108', '0', 'V', 'I', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'D', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'D', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'D', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'D', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'E', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'E', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'E', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'E', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'F', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'F', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'F', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'F', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'C', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'C', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'C', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'C', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'I', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'I', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'I', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'I', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'V', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'V', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'V', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'V', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'L', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'L', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'L', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'L', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'H', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'H', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'H', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'H', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'C', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'C', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'C', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'C', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'A', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'A', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'A', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'S', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'S', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'S', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'E', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'E', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'E', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'E', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '225', '0', 'P', 'H', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'L', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'C', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'C', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'C', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'C', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '230', '0', 'M', 'L', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '230', '0', 'M', 'L', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '230', '0', 'M', 'L', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '230', '0', 'M', 'L', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '236', '0', 'P', 'L', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '238', '0', 'K', 'T', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '238', '0', 'K', 'T', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '238', '0', 'K', 'T', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '238', '0', 'K', 'T', 'ETR'); - - --- ---------------------------- --- Table structure for sequenceanalysis.virus_strains --- ---------------------------- -CREATE TABLE sequenceanalysis.virus_strains -( - virus_strain VARCHAR(45) NOT NULL, - genbank VARCHAR(45) DEFAULT NULL, - species VARCHAR(45) NOT NULL, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_virus_strains PRIMARY KEY (virus_strain) -); -GO - --- ---------------------------- --- Records of sequenceAnalysis.virus_strains --- ---------------------------- -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac239', 'M33262', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac251', 'M19499', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SHIV89.6P', 'U89134', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('E660', NULL, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('HXB2', 'NC_001802', 'HIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac251_CMstock', NULL, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('A_Kawasaki_173_2001', NULL, 'Influenza A'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('A_California_04_09', NULL, 'Influenza A'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('A_Kawasaki_UTK-04_09', NULL, 'Influenza A'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVsmE041-1', NULL, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac239deltaNef', NULL, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac239cy0163', NULL, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVsmE543', 'U72748.2', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVsmE041-2', '', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SHIV-1157ipd3N4', 'DQ779174', 'SIV'); -GO - --- ---------------------------- --- Table structure for sequenceanalysis.dna_adapters --- ---------------------------- -CREATE TABLE sequenceanalysis.dna_adapters -( - Name VARCHAR(255) NOT NULL, - Group_name VARCHAR(255), - Sequence TEXT NOT NULL, - - CONSTRAINT PK_dna_adapters PRIMARY KEY (name) -); - --- ---------------------------- --- Records of sequenceAnalysis.dna_adapters --- ---------------------------- -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 FLX Amplicon A', 'Roche-454 FLX Amplicon', 'GCCTCCCTCGCGCCATCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 FLX Amplicon B', 'Roche-454 FLX Amplicon', 'GCCTTGCCAGCCCGCTCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 Titanium Amplicon A', 'Roche-454 Titanium Amplicon', 'CGTATCGCCTCCCTCGCGCCATCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 Titanium Amplicon B', 'Roche-454 Titanium Amplicon', 'CTATGCGCCTTGCCAGCCCGCTCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 Titanium Library A', 'Roche-454 Titanium Library', 'CCATCTCATCCCTGCGTGTCTCCGACTCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 Titanium Library B', 'Roche-454 Titanium Library', 'CCTATCCCCTGTGTGCCTTGGCAGTCTCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Nextera Transposon Adapter A', 'Nextera Adapters', 'AGATGTGTATAAGAGACAG'); - - --- ---------------------------- --- Table structure for sequenceanalysis.dna_loci --- ---------------------------- -CREATE TABLE sequenceanalysis.dna_loci -( - locus VARCHAR(45) NOT NULL, - regexp VARCHAR(45), - - CONSTRAINT PK_dna_loci PRIMARY KEY (locus) -); - --- ---------------------------- --- Records of sequenceanalysis.dna_loci --- ---------------------------- -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-A', '-a'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-B', '-b'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-E', '-e'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-F', '-f'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-G', '-g'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-I', '-i'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-AG', '-ag'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DPA', 'dpa'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DPB', 'dpb'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DQA', 'dqa'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DQB', 'dqb'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DRA', 'dra'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DRB', 'drb'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('KIR1D', '1D'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('KIR2DL', '2DL4'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('KIR3DL', '2DL5'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('KIR3DS', '3DM'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('HLA-A', 'hla-a'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('HLA-B', 'hla-b'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('HLA-C', 'hla-c'); - --- ---------------------------- --- Table structure for sequenceanalysis.ref_nt_category --- ---------------------------- -CREATE TABLE sequenceanalysis.ref_nt_category -( - category VARCHAR(45) NOT NULL, - - CONSTRAINT PK_ref_nt_category PRIMARY KEY (category) -); - --- ---------------------------- --- Records of sequenceAnalysis.ref_nt_category --- ---------------------------- -INSERT INTO sequenceAnalysis.ref_nt_category (category) VALUES ('Virus'); -INSERT INTO sequenceAnalysis.ref_nt_category (category) VALUES ('DNA'); - --- ---------------------------- --- Table structure for sequenceanalysis.dna_region --- ---------------------------- -CREATE TABLE sequenceanalysis.dna_region -( - Region VARCHAR(45) NOT NULL, - - CONSTRAINT PK_dna_region PRIMARY KEY (region) -); - --- ---------------------------- --- Records of sequenceAnalysis.dna_region --- ---------------------------- -INSERT INTO sequenceAnalysis.dna_region (region) VALUES ('KIR'); -INSERT INTO sequenceAnalysis.dna_region (region) VALUES ('MHC'); - --- ---------------------------- --- Table structure for sequenceAnalysis.sbt_status --- ---------------------------- -CREATE TABLE sequenceAnalysis.sbt_status -( - Status VARCHAR(45) NOT NULL, - - CONSTRAINT PK_sbt_status PRIMARY KEY (status) -); - --- ---------------------------- --- Records of sequenceAnalysis.sbt_status --- ---------------------------- -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Perfect'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Ambiguous'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Unknown'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Artifact'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Reanalysis Needed'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Unanalyzed'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Primer Mismatch'); - --- ---------------------------- --- Table structure for sequenceanalysis.ref_nt_features --- ---------------------------- -CREATE TABLE sequenceanalysis.ref_nt_features -( - RowId INT IDENTITY(1,1) NOT NULL, - ref_nt_id INTEGER NOT NULL, - name VARCHAR(45) NOT NULL, - category VARCHAR(200), - nt_start INTEGER NOT NULL, - nt_stop INTEGER NOT NULL, - nt_sequence TEXT, - comment TEXT, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_ref_nt_features PRIMARY KEY (rowId) - ---NOTE: depreciated --- CONSTRAINT fk_ref_nt_features_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION -); - --- ---------------------------- --- Records of ref_nt_features --- ---------------------------- - - - --- ---------------------------- --- Table structure for sequenceanalysis.ref_aa_features --- ---------------------------- -CREATE TABLE sequenceanalysis.ref_aa_features -( - RowId INT IDENTITY(1,1) NOT NULL, - ref_nt_id INTEGER NOT NULL, - ref_aa_id INTEGER NOT NULL, - name VARCHAR(45) NOT NULL, - category VARCHAR(200), - aa_start INTEGER NOT NULL, - aa_stop INTEGER NOT NULL, - aa_sequence TEXT, - comment TEXT, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_ref_aa_features PRIMARY KEY (rowId) - ---NOTE: depreciated --- CONSTRAINT fk_ref_aa_features_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_ref_aa_features_ref_aa_id FOREIGN KEY (ref_aa_id) --- REFERENCES sequenceanalysis.ref_aa_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION -) -; - --- ---------------------------- --- Records of ref_aa_features --- ---------------------------- -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '1', '132', 'p17 Matrix'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '133', '364', 'p24 Capsid'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '365', '377', 'p2'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '378', '432', 'p7 Nucleocapsid'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '433', '448', 'p1'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '449', '501', 'p6'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '1', '56', 'Gag-Pol Fusion TF protein'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '57', '155', 'Protease'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '156', '715', 'p66 RT'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '596', '715', 'RNAse H'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '716', '1003', 'Integrase'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '42', '31', '511', 'gp120'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '42', '512', '857', 'gp41'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '1', '38', 'Signal'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '39', '136', 'C1'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '137', '204', 'V1'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '210', '258', 'V2'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '259', '365', 'C2'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '366', '400', 'V3'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '401', '472', 'C3'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '473', '504', 'V4'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '504', '547', 'C4'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '548', '570', 'V5'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '571', '614', 'C5'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '25', '614', 'gp120'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '615', '958', 'gp41'); - --- ---------------------------- --- Table structure for sequenceAnalysis.sequence_reads --- ---------------------------- -CREATE TABLE sequenceAnalysis.sequence_reads -( - RowId INT IDENTITY(1,1) NOT NULL, - analysis_id INTEGER NOT NULL, - name VARCHAR(220), - sequence TEXT NOT NULL, - quality TEXT, - translation TEXT, - num_reads INTEGER DEFAULT 1 NOT NULL, - chemistry VARCHAR(45), - comments TEXT DEFAULT NULL, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_sequence_reads PRIMARY KEY (rowId) -); - --- ---------------------------- --- Table structure for sequenceAnalysis.sequence_alignments --- ---------------------------- -CREATE TABLE sequenceAnalysis.sequence_alignments -( - RowId INT IDENTITY(1,1) NOT NULL, - analysis_id INTEGER NOT NULL, - read_id INTEGER NOT NULL, - ref_nt_id INTEGER, - ref_nt_origName VARCHAR (4000), - readname VARCHAR(220), - orientation INTEGER, - q_start INTEGER, - q_stop INTEGER, - ref_start INTEGER, - ref_stop INTEGER, - cigar VARCHAR(4000), - md_tag VARCHAR(4000), - num_mismatches INTEGER, - matchqual INTEGER, - haplotype VARCHAR(200) DEFAULT NULL, - status BIT DEFAULT 1, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_sequence_alignments PRIMARY KEY (rowId) - ---depreciated --- CONSTRAINT fk_sequence_alignments_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION - -); - - --- ---------------------------- --- Table structure for sequenceAnalysis.nt_snps --- ---------------------------- -CREATE TABLE sequenceAnalysis.nt_snps -( - RowId INT IDENTITY(1,1) NOT NULL, - - analysis_id INTEGER NOT NULL, - alignment_id INTEGER NOT NULL, - ref_nt_id INTEGER NOT NULL, - - ref_nt VARCHAR(3) NOT NULL, - ref_nt_position INTEGER, - ref_nt_insert_index INTEGER NOT NULL DEFAULT 0, - - q_nt VARCHAR(3) NOT NULL, - q_nt_position INTEGER, - q_nt_insert_index INTEGER NOT NULL DEFAULT 0, - - status BIT DEFAULT 1, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - - CONSTRAINT PK_nt_snps PRIMARY KEY (rowId) - ---depreciated --- CONSTRAINT fk_nt_snps_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_nt_snps_alignment_id FOREIGN KEY (alignment_id) --- REFERENCES sequenceanalysis.sequence_alignments (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION -); - --- ---------------------------- --- Table structure for sequenceAnalysis.aa_snps --- ---------------------------- -CREATE TABLE sequenceAnalysis.aa_snps -( - RowId INT IDENTITY(1,1) NOT NULL, - analysis_id INTEGER NOT NULL, - alignment_id INTEGER NOT NULL, - ref_nt_id INTEGER NOT NULL, - ref_aa_id INTEGER NOT NULL, - nt_snp_id INTEGER NOT NULL, - - q_aa VARCHAR(3), - q_aa_position INTEGER, - q_aa_insert_index INTEGER NOT NULL DEFAULT 0, - q_codon VARCHAR(45), - - ref_aa VARCHAR(3), - ref_aa_position INTEGER, - ref_aa_insert_index INTEGER NOT NULL DEFAULT 0, - translation_string VARCHAR(250) NOT NULL, - - Status BIT DEFAULT 1, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - - CONSTRAINT PK_aa_snps PRIMARY KEY (rowId), - --- CONSTRAINT fk_aa_snps_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_aa_snps_ref_aa_id FOREIGN KEY (ref_aa_id) --- REFERENCES sequenceanalysis.ref_aa_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_aa_snps_alignment_id FOREIGN KEY (alignment_id) --- REFERENCES sequenceanalysis.sequence_alignments (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_aa_snps_nt_snp FOREIGN KEY (nt_snp_id) --- REFERENCES sequenceanalysis.nt_snps (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION - -); - --- ---------------------------- --- Table structure for sequenceAnalysis.sequence_coverage --- ---------------------------- -CREATE TABLE sequenceAnalysis.sequence_coverage -( - RowId INT IDENTITY(1,1) NOT NULL, - analysis_id INTEGER NOT NULL, - ref_nt_id INTEGER NOT NULL, - - ref_nt_position INTEGER NOT NULL, - ref_nt_insert_index INTEGER NOT NULL DEFAULT 0, - depth INTEGER, - adj_depth INTEGER, - wt INTEGER, - total_n INTEGER, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - - CONSTRAINT PK_sequence_coverage PRIMARY KEY (rowId) - --- depreciated --- CONSTRAINT fk_sequence_coverage_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION -); - ---note: this index is very helpful for the grouped aa_snp queries -CREATE INDEX sequence_coverage_ref_nt_position -ON sequenceanalysis.sequence_coverage (analysis_id, ref_nt_id, ref_nt_position, ref_nt_insert_index); - --- ---------------------------- --- Table structure for sequenceAnalysis.samples --- ---------------------------- -CREATE TABLE sequenceAnalysis.samples -( - RowId INT IDENTITY(1,1) NOT NULL, - SampleName VARCHAR(255), - VialId VARCHAR(255), - SampleDate DATETIME NOT NULL, - CollectDate DATETIME NOT NULL, - - SampleType VARCHAR(255), - SampleSource VARCHAR(255), - Species VARCHAR(255), - Comments TEXT DEFAULT NULL, - Workbook INTEGER, - - --genbank_id VARCHAR(45), - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_samples PRIMARY KEY (rowId) -); - - --- ---------------------------- --- Table structure for sequenceanalysis.haplotype_sequences --- ---------------------------- -CREATE TABLE sequenceanalysis.haplotype_sequences -( - RowId INT IDENTITY(1,1), - HaplotypeId INTEGER NOT NULL, - Ref_nt_id INTEGER, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_haplotype_sequences PRIMARY KEY (rowId) -); - - --- ---------------------------- --- Table structure for sequenceanalysis.haplotype_types --- ---------------------------- -CREATE TABLE sequenceanalysis.haplotype_types -( - Type VARCHAR(4000), - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_haplotype_types PRIMARY KEY (Type) -); - --- ---------------------------- --- Table structure for sequenceanalysis.analysis_types --- ---------------------------- -CREATE TABLE sequenceanalysis.analysis_types -( - Type VARCHAR(4000), - - CONSTRAINT PK_analysis_types PRIMARY KEY (Type) -); - -INSERT INTO sequenceanalysis.analysis_types (Type) VALUES ('Virus'); -INSERT INTO sequenceanalysis.analysis_types (Type) VALUES ('SBT'); - ---foreign keys not necessary. ---pg 8.4 and earlier doesnt support drop if exists, so we tack it on here ---also will be limiting should we ever permit direct submissions of SNPs --- ALTER TABLE sequenceanalysis.ref_aa_sequences DROP CONSTRAINT fk_ref_aa_sequences_ref_nt_id; --- ALTER TABLE sequenceanalysis.aa_snps DROP CONSTRAINT fk_aa_snps_ref_nt_id; --- ALTER TABLE sequenceanalysis.aa_snps DROP CONSTRAINT fk_aa_snps_ref_aa_id; --- ALTER TABLE sequenceanalysis.aa_snps DROP CONSTRAINT fk_aa_snps_alignment_id; --- ALTER TABLE sequenceanalysis.aa_snps DROP CONSTRAINT fk_aa_snps_nt_snp; - -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_a INTEGER -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_t INTEGER -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_g INTEGER -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_c INTEGER -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_del INTEGER -GO - -ALTER TABLE sequenceAnalysis.samples - DROP COLUMN collectDate; -ALTER TABLE sequenceAnalysis.samples - ADD collectDate DATETIME; - -INSERT INTO sequenceanalysis.virus_strains -(virus_strain, genbank, species) -VALUES ('Dengue-DGV37', '', 'DENV'); - -INSERT INTO sequenceanalysis.ref_nt_sequences -(name,category1,category2,mol_type,species,sequence) -VALUES -('Dengue-DGV37', 'Virus', 'Dengue-DGV37', 'RNA', 'DENV', 'GATTCTTTGAGGGAGCTAAGCTCAACGTAGTTCTAACAGTTTTTTAATTAGAGAGCAGATCTCTGATGAATAACCAACGAAAAAAGGCGAGAAGTACGCCTTTCAATATGCTGAAACGCGAGAGAAACCGCGTGTCAACTGTGCAACAGCTGACAAAGAGATTCTCACTTGGAATGCTGCAAGGACGCGGACCATTAAAACTGTTCATGGCCCTTGTGGCGTTCCTTCGTTTCCTAACAATCCCACCAACAGCAGGGATACTAAAAAGATGGGGAACGATCAAGAAATCAAAAGCTATCAATGTTTTGAGAGGGTTCAGGAAAGAGATTGGAAGGATGCTGAACATCTTGAACAGGAGACGTAGGACAGCAGGCGTGATTGTTATGTTGATTCCAACAGCGATGGCGTTCCATTTAACCACACGCAATGGAGAACCACACATGATCGTTGGTAGGCAGGAGAAAGGGAAAAGTCTTCTGTTCAAAACAGAGGATGGTGTTAACATGTGTACCCTCATGGCCATAGACCTTGGTGAGTTGTGTGAAGATACAATCACGTACAAGTGTCCCCTCCTCAGACAAAATGAACCAGAAGACATAGATTGTTGGTGCAACTCTACGTCCACATGGGTAACTTATGGGACATGTACCACCACAGGAGAACACAGAAGAGAAAAAAGATCAGTGGCGCTCGTTCCACATGTGGGTATGGGACTGGAGACACGAACTGAAACATGGATGTCATCAGAAGGGGCCTGGAAGCATGTTCAGAGAATTGAAACCTGGATCTTGAGACATCCAGGTTTTACCATAATGGCAGCGATCCTGGCATACACCATAGGAACGACACACTTCCAAAGGGCCTTGATTTTCATCTTACTGACAGCTGTTGCTCCTTCAATGACAATGCGCTGCATAGGAATATCAAATAGAGACTTCGTAGAAGGGGTTTCAGGAGGAAGCTGGGTTGACATCGTTTTAGAACATGGAAGTTGTGTGACGACGATGGCAAAAAACAAACCAACATTGGATTTTGAACTGATAAAAACAGAAGCCAAACAACCTGCCACTCTAAGGAAGTACTGTATAGAAGCAAAGCTGACCAACACAACAACAGAATCGCGTTGCCCAACACAAGGGGAACCCAGTCTAAATGAAGAGCAGGACAAAAGGTTCATCTGCAAACACTCCATGGTAGACAGAGGATGGGGAAATGGATGTGGATTATTTGGAAAGGGAGGCATTGTGACCTGTGCTATGTTTACATGCAAAAAGAACATGGAAGGAAAAATCGTACAGCCAGAAAATTTGGAATACACCATCGTGATAACACCTCACTCAGGAGAAGAGCACGCTGTAGGTAATGACACAGGAAAGCATGGAAAGGAAATCAAAATAACACCACAGAGTTCCACCACAGAAGCAGAACTGACAGGCTATGGCATTGTCACGATGGAGTGCTCTCCGAGAACGGGCCTCGACTTCAATGAGATGGTGCTGCTGCAGATGGAAGACAAAGCTTGGCTGGTGCACAGGCAATGGTTCCTAGACCTGCCGTTGCCATGGCTACCCGGAGCGGATACACAAGGATCAAATTGGATACAGAAAGAGACATTGGTCACTTTCAAAAACCCCCACGCCAAGAAACAGGATGTCGTTGTCTTAGGGTCTCAAGAAGGGGCCATGCACACGGCACTCACAGGGGCTACAGAAATCCAGATGTCATCAGGAAACTTACTGTTCACGGGACATCTCAAGTGCAGGCTGAGAATGGACAAACTACAGCTCAAAGGAATGTCATACTCTATGTGTACTGGAAAGTTTAAAATCGTGAAGGAAATAGCAGAAACACAACATGGAACAATAGTTATCAGAGTACAATATGAAGGGGACGGCTCTCCATGTAAGATCCCCTTTGAGATAACAGATTTGGAAAAAAGACACGTCTTAGGACGCCTGATTACAGTTAACCCAATCGTAACAGAAAAAGATAGCCCAGTCAACATAGAAGCAGAACCCCCATTCGGAGACAGTTACATCATCGTGGGAGTAGAGCCGGGACAACTGAAACTCAATTGGTTTAAGAAGGGAAGTTCCATCGGCCAAATGTTTGAGACAACAATGAGAGGAGCAAAGAGAATGGCCATTTTAGGTGACACAGCCTGGGATTTTGGATCCCTGGGAGGAGTGTTTACATCTATAGGAAAGGCTCTCCATCAAGTTTTCGGAGCAATCTATGGGGCTGCTTTTAGTGGGGTCTCATGGACTATGAAAATCCTCATAGGAGTCATCATCACATGGATAGGAATGAATTCACGTAGCACCTCACTGTCTGTGTCGCTAGTATTGGTGGGAGTCGTGACACTGTACCTGGGAGCCATGGTGCAGGCTGATAGTGGTTGCATTGTGAGCTGGAAAAATAAAGAACTGAAATGTGGCAGCGGGATCTTCATTACAGATAACGTACACACATGGACAGAGCAATATAAGTTCCAACCAGAATCCCCTTCAAAACTAGCTTCAGCTATCCAAAAAGCTCATGAAGAAGGCATTTGTGGAATCCGCTCAGTAACAAGATTGGAGAATCTGATGTGGAAACAAATAACACCAGAATTGAATCATATTCTATCAGAAAATGAGGTAAAGTTGACCATTATGACAGGAGACATTAAAGGAATCATGCAGGCAGGAAAACGATCCTTGCGGCCTCAGCCCACTGAGCTGAAGTACTCATGGAAAACATGGGGAAAGGCGAAAATGCTCTCTACAGAGTCTCACAATCAGACCTTTCTTATTGATGGCCCTGAAACAGCAGAATGCCCCAACACAAACAGAGCTTGGAACTCACTGGAAGTTGAAGACTATGGTTTTGGAGTTTTTACCACCAATATATGGCTAAAATTGAGAGAAAAACAGGATGTATTTTGTGACTCAAAACTCATGTCAGCGGCCATTAAAGACAACAGAGCCGTCCATGCCGATATGGGTTATTGGATAGAAAGTGCACTCAATGACACATGGAAGATGGAGAAAGCCTCCTTCATTGAAGTTAAAAGCTGCCACTGGCCAAAGTCACACACCCTATGGAGCAATGGAGTATTAGAAAGTGAGATGATAATTCCAAAAAATTTTGCCGGGCCAGTGTCACAACACAACTACAGACCAGGCTACCATACACAAACAGCAGGACCTTGGCATCTAGGTAAGCTTGAGATGGACTTTGATTTCTGCGAAGGAACTACAGTGGTGGTGACTGAGGACTGTGGAAATAGAGGACCCTCTTTAAGAACGACCACTGCCTCTGGAAAGCTCATAACAGAATGGTGCTGCCGATCCTGCACACTACCACCTCTAAGATACAGAGGTGAGGATGGATGCTGGTACGGGATGGAAATCAGACCTTTGAAAGAGAAAGAAGAGAACTTGGTCAACTCCTTGGTCACAGCCGGACATGGGCAGATTGACAACTTTTCACTAGGAGTCTTGGGAATGGCACTGTTCCTGGAAGAAATGCTTAGGACCCGAGTAGGAACGAAACATGCAATACTGCTAGTTGCACTATCTTTCGTGACATTGATTACTGGGAACATGTCTTTTAGAGACCTGGGAAGAGTGATGGTCATGGTGGGTGCTACCATGACGGATGACATAGGTATGGGAGTGACTTATCTTGCCCTACTAGCAGCTTTCAAAGTTAGACCAACTTTTGCAGCTGGACTACTCTTGAGAAAACTGACCTCCAAGGAATTGATGATGGCCACCATAGGAATCGCACTCCTTTCCCAAAGCACCTTGCCAGAGACCATTCTAGAACTGACTGATGCGTTAGCCTTGGGCATGATGGCCCTCAAAATAGTGAGAAATATGGAAAAATACCAATTGGCAGTGACTATCATGGCTATTTCGTGTGTCCCAAATGCAGTGATATTGCAAAACGCATGGAAGGTGAGTTGCACAATATTGGCAGCGGTGTCCGTTTCTCCACTGCTCCTAACATCCTCACAGCAGAAAGCGGATTGGATACCACTGGCACTGACGATAAAAGGTCTCAACCCAACAGCTATTTTTTTAACAACTCTTTCGAGAACCAGCAAGAAAAGGAGCTGGCCGCTAAATGAAGCTATCATGGCAGTCGGGATGGTGAGCATTTTAGCCAGTTCTCTCCTAAAGAATGATATTCCTATGACAGGTCCATTAGTGGCTGGAGGGCTCCTCACCGTATGTTACGTGCTCACTGGACGATCGGCCGATTTGGAACTGGAGAGAGCTGCCGATGTAAAATGGGAAGATCAGGCAGAAATATCAGGAAGCAGCCCAATTCTGTCAATAACAATATCAGAAGATGGCAGCATGTCGATAAAAAATGAAGAGGAAGAACAAACACTGACCATACTCATTAGGACGGGATTGTTGGTGATCTCAGGAGTCTTTCCAGTATCGATACCAATCACGGCAGCAGCATGGTACCTGTGGGAAGTGAAGAAACAACGGGCTGGAGTATTGTGGGACGTCCCTTCACCCCCACCAGTGGGAAAAGCCGAACTGGAAGATGGAGCCTATAGAATCAAGCAAAGAGGGATTCTTGGATATTCTCAGATTGGAGCCGGAGTTTACAAAGAAGGAACATTCCATACAATGTGGCACGTCACACGTGGTGCTGTTCTGATGCATAGAGGGAAGAGGATTGAACCATCATGGGCAGATGTCAAGAAAGATCTAATATCATATGGAGGAGGCTGGAAGCTAGAAGGAGAATGGAAGGAAGGAGAGGAAGTTCAAGTCCTGGCATTGGAACCTGGAAAAAATCCCAGAGCTGTCCAAACGAAACCTGGAATTTTCAAAACCAACACCGGAACCATAGGCGCTGTATCTCTGGACTTTTCCCCTGGAACGTCAGGATCTCCAATTGTCGACAGAAAAGGAAAAGTTGTGGGTCTTTATGGTAATGGTGTTGTCACAAGGAGTGGAGCATACGTAAGTGCCATAGCCCAGACCGAAAAAAGCATTGAAGACAATCCAGAGATCGAAGATGACATTTTCCGAAAGAAAAGATTGACCATCATGGACCTCCATCCAGGGGCAGGAAAGACAAAAAGATACCTTCCAGCCATAGTTAGAGAAGCCATAAAACGTGGCTTGAGAACATTAATCCTGGCTCCCACTAGAGTCGTGGCAGCTGAAATGGAGGAAGCTCTTAGAGGACTCCCAATAAGATACCAAACCCCAGCCATCAGAGCCGAGCACACCGGGCGAGAGATCGTGGACCTAATGTGTCATGCCACATTTACTATGAGGCTGCTATCACCAGTCAGAGTGCCAAATTACAACCTGATTATCATGGACGAAGCCCACTTCACAGACCCAGCAAGCATAGCAGCTAGAGGATACATTTCAACTCGAGTAGAGATGGGTGAAGCAGCCGGGATTTTTATGACAGCCACTCCTCCGGGAAGCAGAGACCCATTTCCTCAGAGCAATGCACCAATCATGGATGAGGAAAGAGAAATCCCTGAGCGTTCATGGAATTCAGGACATGAATGGGTCACGGATTTTAAAGGGAAGACTGTTTGGTTTGTTCCAAGTATAAAAGCAGGAAATGACATAGCAGCTTGTCTTAGGAAAAATGGAAAGAAAGTGATACAACTCAGTAGGAAGACTTTTGACTCTGAGTATGTTAAGACTAGAGCCAATGATTGGGACTTTGTGGTCACAACTGACATTTCAGAAATGGGTGCCAACTTCAAGGCTGAGAGGGTTATAGACCCTAGACGCTGCATGAAACCAGTTATACTAACAGATGGCGAAGAGCGGGTGATCTTGGCAGGACCTATGCCAGTGACCCACTCTAGTGCAGCGCAAAGAAGAGGGAGAATAGGAAGAAATCCAAAAAATGAAAATGACCAGTACATATACATGGGGGAACCTCTCGAAAATGATGAAGACTGTGCACACTGGAAAGAAGCTAAAATGCTCCTAGATAACATCAACACACCCGAAGGAATCATTCCTAGTATGTTCGAACCAGAGCGTGAAAAAGTGGATGCCATTGATGGTGAATACCGTTTGAGAGGAGAAGCAAGGAAAACCTTTGTGGACCTAATGAGAAGAGGGGACTTACCAGTCTGGTTGGCCTACAAAGTGGCAGCTGAAGGCATCAACTACGCAGACAGAAAGTGGTGTTTTGATGGAATCAAGAACAACCAAATACTGGAAGAAAATGTGGAAGTGGAAATCTGGACAAAAGAAGGGGAAAGGAAAAAATTAAAACCCAGATGGTTGGATGCTAGGATCTATTCTGATCCACTGGCACTAAAAGAATTCAAGGAATTTGCAGCTGGCAGAAAATCTTTGACCCTGAACCTAATCACAGAAATGGGTAGGCTTCCAACTTTCATGACTCAGAAGGCAAGAAACGCACTGGACAACTTGGCTGTGCTGCATACGGCTGAGGTAGGTGGAAAGGCGTACACTCATGCTCTCAGTGAACTGCCGGAGACTCTGGAGACACTGCTTCTACTGACACTCCTGGCAGCAGTCACAGGAGGAATCTTCTTATTCTTAATGAGCGGAAAAGGTATAGGGAAGATGACTCTGGGAATGTGTTGCATAATCACAGCTAGCATTCTCCTATGGTATGCACAGATACAACCACACTGGATAGCAGCTTCAATAATACTGGAGTTTTTTCTCATAGTTTTGCTCATTCCAGAACCAGAAAAACAGAGAACACCCCAAGACAACCAATTGACCTACGTTGTCATAGCCATCCTCACAGTGGTGGCCGCAACCATGGCAAACGAGATGGGTTTCCTGGAAAAAACCAAGAAAGACTTCGGATTTGGAAGCATTACAACCCAGGAATCTGAGAGCAACATCCTGGACATAGATCTACGTCCTGCATCAGCATGGACGCTGTATGCCGTGGCTACAACATTTGTCACACCAATGTTGCGACATAGCATTGAAAATTCCTCAGTAAATGTCTCCCTAACAGCCATTGCTAACCAAGCTACAGTGCTAATGGGTCTTGGGAAAGGATGGCCATTGTCAAAGATGGACATCGGAGTTCCCCTCCTTGCCATTGGATGCTACTCACAAGTCAACCCTATAACCCTCACAGCAGCTCTTCTTTTATTGGTAGCACATTATGCCATTATAGGGCCAGGACTTCAAGCAAAAGCAACCAGAGAAGCTCAGAAAAGAGCAGCAGCAGGCATCATGAAAAACCCAACAGTCGATGGAATAACAGTGATTGACCTGGAACCAATACCCTATGATCCAAAATTTGAAAAGCAGTTAGGACAAGTAATGCTCCTAATCCTCTGCGTGACTCAAGTATTAATGATGAGGACTACATGGGCTTTGTGTGAGGCTCTAACCCTAGCGACCGGGCCCATCTCCACACTATGGGAAGGAAATCCAGGGAGATTTTGGAACACCACCATTGCAGTGTCAATGGCTAACATCTTTAGGGGGAGCTACTTGGCCGGAGCTGGACTTCTCTTTTCCATCATGAAGAACACAACAAACACAAGAAGAGGAACTGGCAACGTAGGAGAGACACTTGGAGAAAAATGGAAAAGCCGATTAAATGCACTGGGAAAAAGTGAATTTCAGATCTACAAGAAAAGTGGAATCCAGGAAGTGGATAGAACCCTAGCAAAAGAAGGCATCAAAAGAGGAGAAACGGACCACCATGCTGTGTCACGAGGATCAGCAAAACTGAGATGGTTCGTCGAGAGAAACATGGTCACACCGGAAGGGAAGGTGGTGGATCTTGGTTGCGGCAGAGGGGGCTGGTCATACTATTGTGGGGGACTAAAGAATGTAAGAGAAGTCAAAGGCCTAACAAAAGGAGGACCAGGACACGAAGAACCCATCCCCATGTCAACATATGGGTGGAATCTAGTGCGTCTGCAAAGTGGGGTCGACGTTTTTTTCACCCCGCCAGAAAAGTGTGATACATTGTTGTGTGACATAGGGGAGTCGTCACCAAATCCCACGATAGAAGCAGGACGAACACTCAGAGTCCTCAACTTAGTGGAAAATTGGCTGAACAATAACACCCAATTTTGCATAAAGGTCCTCAATCCATATATGCCCTCAGTCATAGAAAAAATGGAAACACTACAAAGGAAATATGGAGGAGCCTTAGTGAGGAATCCACTCTCACGAAACTCCACGCATGAAATGTACTGGGTATCTAATGCTACCGGGAACATAGTGTCATCAGTGAACATGATTTCAAGGATGTTGATTAACAGATTCACAATGAAACATAAGAAAGCCACCTACGAGCCAGATGTTGACCTAGGAAGTGGAACCCGCAACATTGGAATTGAAAGTGAGATACCAAATCTAGACATAATAGGAAAGAGAATAGAGAAAATAAAACAAGAGCATGAAACATCATGGCATTATGACCAAGACCACCCATACAAAACGTGGGCTTACCATGGCAGCTATGAAACAAAACAAACTGGATCAGCATCATCTATGGTGAACGGAGTGGTCAGACTGCTGACAAAACCTTGGGACGTCGTTCCTATGGTGACACAGATGGCAATGACAGACACGACTCCATTTGGACAACAGCGCGTTTTCAAAGAGAAAGTGGACACGAGAACTCAAGAACCGAAGGAAGGCACAAAGAAACTGATGAAAATTACGGCAGAGTGGCTTTGGAAAGAACTAGGAAAGGAAAAGACACCTAGAATGTGTACCAGAGAAGAATTCACAAGAAAAGTGAGAAGCAATGCAGCCTTGGGGGCCGTATTCACTGATGAGAACAAATGGAAATCGGCACGTGAGGCTGTTGAAGATGGTAGGTTTTGGGAGCTGGTTGACAGGGAAAGAAATCTCCATCTTGAAGGAAAGTGTGAAACATGTGTGTACAACATGATGGGAAAAAGAGAGAAGAAACTAGGGGAGTTCGGCAAGGCAAAAGGTAGCAGAGCCATATGGTACATGTGGCTTGGAGCACGCTTCTTAGAGTTTGAAGCCCTAGGATTTCTGAATGAAGATCACTGGTTCTCCAGAGGGAACTCCCTGAGTGGAGTGGAAGGAGAAGGGCTGCACAGGCTAGGCTACATTTTAAGAGAGGTGGGCAAGAAGGAAGGAGGAGCAATGTACGCCGATGATACAGCAGGATGGGACACAAGAATCACACTAGAAGACTTAAAAAATGAAGAAATGGTAACAAACCACATGAAAGGAGAACACAAGAAACTAGCCGAGGCCATATTCAAATTAACGTACCAAAACAAGGTGGTGCGTGTGCAAAGACCAACACCAAGAGGCACAGTAATGGATATCATATCGAGAAAAGACCAAAGAGGCAGTGGGCAAGTCGGTACCTATGGCCTTAATACTTTCACCAATATGGAAGCCCAATTAATTAGACAGATGGAAGGAGAAGGAATCTTCAAAAGCATTCAGCACCTGACCGCCACAGAAGAAATCGCTGTACAGAACTGGTTAGCAAGAGTGGGGCGTGAAAGGCTATCAAGAATGGCCATCAGTGGAGATGACTGTGTTGTAAAACCTATAGATGACAGATTTGCAAGTGCTCTAACAGCTCTAAATGACATGGGAAAAGTTAGGAAAGATATACAACAATGGGAACCTTCAAGAGGATGGAACGATTGGACACAGGTGCCTTTCTGTTCACACCATTTTCATGAGTTAGTCATGAAAGATGGTCGCGTGCTCGTAGTCCCATGCAGAAACCAAGATGAACTGATTGGCAGAGCCCGAATTTCCCAGGGAGCCGGGTGGTCTTTGAAGGAGACGGCTTGTTTGGGGAAGTCTTACGCCCAAATGTGGACCCTGATGTACTTCCACAGACGTGACCTCAGATTGGCGGCAAATGCCATTTGCTCGGCAGTCCCGTCACATTGGGTTCCAACAAGTCGAACAACCTGGTCCATACACGCCAAGCATGAATGGATGACGACGGAAGACATGCTGGCAGTCTGGAACAGGGTGTGGATCCAAGAAAACCCATGGATGGAAGACAAAACTCCAGTGGAATCATGGGAAGAAGTCCCATACCTGGGGAAAAGGGAAGACCAATGGTGCGGCTCATTGATTGGGCTAACAAGCAGGGCTACCTGGGCAAAGAATATCCAGACAGCAATAAATCAAGTCAGATCCCTTATAGGCAATGAGGGATACACAGACTACATGCCATCCATGAAGAGATTCAGAAGGGAAGAGGAAGAGGCAGGTGTCCTGTGGTAGAAGGCGAGACCAACATAAAACAAGGCTGAAAGTCAGGTCGGATTAAGCCATAGTACGGGAAAAACTATGCTACCTGTGAGCCCCGTCCAAGGACGTAAAAAGAAGTCAGGCCATCACAAATGCCACAGCTTGAGCAAACTGTGCAGCCTGTAGCTCCACCTGAGGAGGTGTAAAAACCCGGGAGGCCACAAACCATGGAAGCTGTACGCATGGCGTAGTGGACTAGCGGTTAGAGGAGACCCCTCCCTTACAAATCGCAGCAACAACGGGGGCCCAAGGTGAGATGAAGCTGTAGTCTCACTGGAAGGACTAGAGGTTAGAGGAGACCCCCCCAAAACAAAAAACAGCATATTGACG') -; - - -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('66-407', '66', 'MNNQRKKARSTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILKRWGTIKKSKAINVLRGFRKEIGRMLNILNRRRRTAGVIVMLIPTAMA', 'Capsid', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('408-905', '408', 'FHLTTRNGEPHMIVGRQEKGKSLLFKTEDGVNMCTLMAIDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTCTTTGEHRREKRSVALVPHVGMGLETRTETWMSSEGAWKHVQRIETWILRHPGFTIMAAILAYTIGTTHFQRALIFILLTAVAPSMT', 'Protein M', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('906-2390', '906', 'MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFICKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSTTEAELTGYGIVTMECSPRTGLDFNEMVLLQMEDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKIVKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIVGVEPGQLKLNWFKKGSSIGQMFETTMRGAKRMAILGDTAWDFGSLGGVFTSIGKALHQVFGAIYGAAFSGVSWTMKILIGVIITWIGMNSRSTSLSVSLVLVGVVTLYLGAMVQA', 'Envelope', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('2391-3446', '2391', 'DSGCIVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDYGFGVFTTNIWLKLREKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKMEKASFIEVKSCHWPKSHTLWSNGVLESEMIIPKNFAGPVSQHNYRPGYHTQTAGPWHLGKLEMDFDFCEGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTA', 'NS1', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('3447-4100', '3447', 'GHGQIDNFSLGVLGMALFLEEMLRTRVGTKHAILLVALSFVTLITGNMSFRDLGRVMVMVGATMTDDIGMGVTYLALLAAFKVRPTFAAGLLLRKLTSKELMMATIGIALLSQSTLPETILELTDALALGMMALKIVRNMEKYQLAVTIMAISCVPNAVILQNAWKVSCTILAAVSVSPLLLTSSQQKADWIPLALTIKGLNPTAIFLTTLSRTSKKR', 'NS2A', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('4101-4490', '4101', 'SWPLNEAIMAVGMVSILASSLLKNDIPMTGPLVAGGLLTVCYVLTGRSADLELERAADVKWEDQAEISGSSPILSITISEDGSMSIKNEEEEQTLTILIRTGLLVISGVFPVSIPITAAAWYLWEVKKQR', 'NS2B', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('4491-6344', '4491', 'AGVLWDVPSPPPVGKAELEDGAYRIKQRGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHRGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGIFKTNTGTIGAVSLDFSPGTSGSPIVDRKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPEIEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYVKTRANDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPKNENDQYIYMGEPLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRRGDLPVWLAYKVAAEGINYADRKWCFDGIKNNQILEENVEVEIWTKEGERKKLKPRWLDARIYSDPLALKEFKEFAAGRK', 'NS3', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('6345-6725', '6345', 'SLTLNLITEMGRLPTFMTQKARNALDNLAVLHTAEVGGKAYTHALSELPETLETLLLLTLLAAVTGGIFLFLMSGKGIGKMTLGMCCIITASILLWYAQIQPHWIAASIILEFFLIVLLIPEPEKQR', 'NS4A', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('6726-6794', '6726', 'TPQDNQLTYVVIAILTVVAATMA', '2K Peptidase', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('6795-7538', '6795', 'NEMGFLEKTKKDFGFGSITTQESESNILDIDLRPASAWTLYAVATTFVTPMLRHSIENSSVNVSLTAIANQATVLMGLGKGWPLSKMDIGVPLLAIGCYSQVNPITLTAALLLLVAHYAIIGPGLQAKATREAQKRAAAGIMKNPTVDGITVIDLEPIPYDPKFEKQLGQVMLLILCVTQVLMMRTTWALCEALTLATGPISTLWEGNPGRFWNTTIAVSMANIFRGSYLAGAGLLFSIMKNTTNTRR', 'NS4B', '38'); -INSERT INTO sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('7539-10238', '7539', 'GTGNVGETLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNMVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFTPPEKCDTLLCDIGESSPNPTIEAGRTLRVLNLVENWLNNNTQFCIKVLNPYMPSVIEKMETLQRKYGGALVRNPLSRNSTHEMYWVSNATGNIVSSVNMISRMLINRFTMKHKKATYEPDVDLGSGTRNIGIESEIPNLDIIGKRIEKIKQEHETSWHYDQDHPYKTWAYHGSYETKQTGSASSMVNGVVRLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTQEPKEGTKKLMKITAEWLWKELGKEKTPRMCTREEFTRKVRSNAALGAVFTDENKWKSAREAVEDGRFWELVDRERNLHLEGKCETCVYNMMGKREKKLGEFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWFSRGNSLSGVEGEGLHRLGYILREVGKKEGGAMYADDTAGWDTRITLEDLKNEEMVTNHMKGEHKKLAEAIFKLTYQNKVVRVQRPTPRGTVMDIISRKDQRGSGQVGTYGLNTFTNMEAQLIRQMEGEGIFKSIQHLTATEEIAVQNWLARVGRERLSRMAISGDDCVVKPIDDRFASALTALNDMGKVRKDIQQWEPSRGWNDWTQVPFCSHHFHELVMKDGRVLVVPCRNQDELIGRARISQGAGWSLKETACLGKSYAQMWTLMYFHRRDLRLAANAICSAVPSHWVPTSRTTWSIHAKHEWMTTEDMLAVWNRVWIQENPWMEDKTPVESWEEVPYLGKREDQWCGSLIGLTSRATWAKNIQTAINQVRSLIGNEGYTDYMPSMKRFRREEEEAGVLW', 'NS5', '38'); - --- index container and also other FK relationships - -CREATE INDEX aa_snps_container ON sequenceanalysis.aa_snps (container); -CREATE INDEX nt_snps_container ON sequenceanalysis.nt_snps (container); -CREATE INDEX sequence_alignments_container ON sequenceanalysis.sequence_alignments (container); -CREATE INDEX sequence_analyses_container ON sequenceanalysis.sequence_analyses (container); -CREATE INDEX sequence_coverage_container ON sequenceanalysis.sequence_coverage (container); -CREATE INDEX sequence_reads_container ON sequenceanalysis.sequence_reads (container); -CREATE INDEX aa_snps_analysis_id ON sequenceanalysis.aa_snps (analysis_id); -CREATE INDEX nt_snps_analysis_id ON sequenceanalysis.nt_snps (analysis_id); -CREATE INDEX sequence_alignments_analysis_id ON sequenceanalysis.sequence_alignments (analysis_id); -CREATE INDEX sequence_coverage_analysis_id ON sequenceanalysis.sequence_coverage (analysis_id); -CREATE INDEX sequence_reads_analysis_id ON sequenceanalysis.sequence_reads (analysis_id); -CREATE INDEX aa_snps_ref_nt_id ON sequenceanalysis.aa_snps (ref_nt_id); -CREATE INDEX nt_snps_ref_nt_id ON sequenceanalysis.nt_snps (ref_nt_id); -CREATE INDEX sequence_alignments_ref_nt_id ON sequenceanalysis.sequence_alignments (ref_nt_id); -CREATE INDEX sequence_coverage_ref_nt_id ON sequenceanalysis.sequence_coverage (ref_nt_id); -CREATE INDEX aa_snps_alignment_id ON sequenceanalysis.aa_snps (alignment_id); -CREATE INDEX nt_snps_alignment_id ON sequenceanalysis.nt_snps (alignment_id); -CREATE INDEX aa_snps_nt_snp_id ON sequenceanalysis.aa_snps (nt_snp_id); -CREATE INDEX aa_snps_ref_aa_id ON sequenceanalysis.aa_snps (ref_aa_id); - -ALTER TABLE sequenceAnalysis.site_module_properties - DROP COLUMN container; - -CREATE TABLE sequenceanalysis.sequence_platforms -( - Platform VARCHAR(45) NOT NULL, - Aliases VARCHAR(200), - - CONSTRAINT PK_sequence_platforms PRIMARY KEY (platform) -); - --- ---------------------------- --- Records of sequenceAnalysis.sequence_platforms --- ---------------------------- -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('ILLUMINA', 'SLX,SOLEXA'); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('SOLID', NULL); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('LS454', '454'); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('COMPLETE_GENOMICS', 'COMPLETE'); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('PACBIO', NULL); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('ION_TORRENT', 'IONTORRENT'); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('SANGER', NULL); - -UPDATE sequenceAnalysis.sequence_reads set chemistry = 'LS454' WHERE chemistry = 'Pyrosequencing'; - -DELETE FROM sequenceAnalysis.site_module_properties WHERE prop_name = 'contactEmail'; -INSERT INTO sequenceAnalysis.site_module_properties (prop_name, stringValue) VALUES ('contactEmail', 'bbimber@labkey.com'); - -CREATE TABLE sequenceAnalysis.sequence_readsets -( - RowId INT IDENTITY(1,1) NOT NULL, - name VARCHAR(220), - subjectid INTEGER, - sampleid INTEGER, - platform VARCHAR(100), - comments TEXT DEFAULT NULL, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_sequence_readsets PRIMARY KEY (rowId) -); - - -ALTER TABLE sequenceAnalysis.sequence_analyses - ADD readset INTEGER; - -ALTER TABLE sequenceAnalysis.sequence_reads - ADD readset INTEGER; - ---populate readsets based on sequence_reads -INSERT INTO sequenceAnalysis.sequence_readsets - (sampleid,container,created,createdby,modified,modifiedby,platform) - (SELECT a.sampleid,container,created,createdby,modified,modifiedby, 'LS454' as platform - FROM sequenceAnalysis.sequence_analyses a - GROUP BY a.sampleid, container,created,createdby,modified,modifiedby -); -GO - ---then update sequence_reads based on readsets -UPDATE sequenceAnalysis.sequence_reads -SET sequence_reads.readset = ( -SELECT sequence_readsets.rowid -FROM sequenceAnalysis.sequence_readsets -join sequenceAnalysis.sequence_analyses -on (sequence_analyses.sampleid=sequence_readsets.sampleid) -WHERE sequence_reads.analysis_id=sequence_analyses.rowid); - -ALTER TABLE sequenceAnalysis.sequence_readsets - ADD fileid INTEGER; - -ALTER TABLE sequenceAnalysis.nt_snps - ADD quality_score DOUBLE PRECISION -ALTER TABLE sequenceAnalysis.nt_snps - ADD avg_qual DOUBLE PRECISION -GO - -ALTER TABLE sequenceAnalysis.aa_snps - ADD avg_qual DOUBLE PRECISION; -GO - - -ALTER TABLE sequenceAnalysis.sequence_analyses - ADD alignmentFile INTEGER -ALTER TABLE sequenceAnalysis.sequence_analyses - ADD snpFile INTEGER -GO - -ALTER TABLE sequenceanalysis.sequence_readsets - DROP COLUMN subjectid -ALTER TABLE sequenceanalysis.sequence_readsets - ADD subjectid VARCHAR(200); - -ALTER TABLE sequenceanalysis.ref_nt_sequences - ADD aliases VARCHAR(1000); - -ALTER TABLE sequenceanalysis.aa_snps - ADD raw_reads INTEGER -ALTER TABLE sequenceanalysis.aa_snps - ADD adj_reads INTEGER -ALTER TABLE sequenceanalysis.aa_snps - ADD raw_depth INTEGER -ALTER TABLE sequenceanalysis.aa_snps - ADD adj_depth INTEGER -ALTER TABLE sequenceanalysis.aa_snps - ADD raw_percent INTEGER -ALTER TABLE sequenceanalysis.aa_snps - ADD adj_percent INTEGER -ALTER TABLE sequenceanalysis.aa_snps - ADD nt_positions VARCHAR(50); - ---drop column default -DECLARE @name NVARCHAR(32), - @sql NVARCHAR(1000) - --- find constraint name -SELECT @name = O.name -FROM sys.default_constraints O -WHERE parent_object_id = object_id('sequenceanalysis.sequence_alignments') -AND Type = 'D' -AND O.name LIKE '%haplo%' - --- delete if found -IF NOT @name IS NULL -BEGIN - SELECT @sql = 'ALTER TABLE sequenceanalysis.sequence_alignments DROP CONSTRAINT [' + @name + ']' - EXECUTE sp_executesql @sql -END - -ALTER TABLE sequenceanalysis.sequence_alignments - DROP COLUMN haplotype; - -ALTER TABLE sequenceanalysis.samples - DROP COLUMN workbook; - ---drop column default -SELECT @name = NULL; -SELECT @sql = NULL; - --- find constraint name -SELECT @name = O.name -FROM sys.default_constraints O -WHERE parent_object_id = object_id('sequenceanalysis.sequence_analyses') -AND Type = 'D' -AND O.name LIKE '%sampl%' - --- delete if found -IF NOT @name IS NULL -BEGIN - SELECT @sql = 'ALTER TABLE sequenceanalysis.sequence_analyses DROP CONSTRAINT [' + @name + ']' - EXECUTE sp_executesql @sql -END - -ALTER TABLE sequenceanalysis.sequence_analyses - DROP COLUMN sampleid; - -ALTER TABLE sequenceanalysis.haplotype_types - DROP COLUMN container; - -ALTER TABLE sequenceanalysis.haplotype_types - DROP COLUMN created; - -ALTER TABLE sequenceanalysis.haplotype_types - DROP COLUMN createdby; - -ALTER TABLE sequenceanalysis.haplotype_types - DROP COLUMN modified; - -ALTER TABLE sequenceanalysis.haplotype_types - DROP COLUMN modifiedby; - -ALTER TABLE sequenceanalysis.haplotype_sequences - DROP COLUMN container; - -CREATE TABLE sequenceanalysis.haplotypes -( - Name VARCHAR(200) NOT NULL, - Type VARCHAR(200), - Comment TEXT, - - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_haplotypes PRIMARY KEY (name) -); - - -EXEC sp_rename 'sequenceanalysis.ref_nt_sequences.category1', 'category', 'COLUMN'; -GO -EXEC sp_rename 'sequenceanalysis.ref_nt_sequences.category2', 'subset', 'COLUMN'; -GO -EXEC sp_rename 'sequenceanalysis.ref_nt_sequences.category3', 'locus', 'COLUMN'; -GO -EXEC sp_rename 'sequenceanalysis.ref_nt_sequences.category4', 'lineage', 'COLUMN'; -GO - -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_a DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_t DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_g DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_c DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_n DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_del DOUBLE PRECISION; - -ALTER TABLE sequenceAnalysis.nt_snps - ADD pvalue DOUBLE PRECISION; - -ALTER TABLE sequenceAnalysis.aa_snps - ADD min_pvalue DOUBLE PRECISION; - -ALTER TABLE sequenceAnalysis.sequence_analyses - ADD reference_library INTEGER; - -ALTER TABLE sequenceAnalysis.sequence_readsets - ADD barcode5 VARCHAR(100); - -ALTER TABLE sequenceAnalysis.sequence_readsets - ADD barcode3 VARCHAR(100); - -CREATE INDEX aa_snps_ref_aa_position_codon - ON sequenceanalysis.aa_snps (analysis_id, ref_nt_id, ref_aa_id, ref_aa_position, ref_aa_insert_index, ref_aa, q_aa, q_codon); - -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_a DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_t DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_g DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_c DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_n DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_del DOUBLE PRECISION; -ALTER TABLE sequenceAnalysis.sequence_readsets - ADD raw_input_file INTEGER; - -ALTER TABLE sequenceanalysis.sequence_alignments - ALTER COLUMN read_id INTEGER NULL; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN adj_percent DOUBLE PRECISION; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN raw_percent DOUBLE PRECISION; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN adj_depth DOUBLE PRECISION; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN raw_depth DOUBLE PRECISION; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN adj_reads DOUBLE PRECISION; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN raw_reads DOUBLE PRECISION; - -ALTER TABLE sequenceanalysis.sequence_readsets - ADD qc_file INTEGER; - -ALTER TABLE sequenceanalysis.sequence_analyses - ADD qc_file INTEGER; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-11.30-12.10.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-11.30-12.10.sql deleted file mode 100644 index e63b2dd81..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-11.30-12.10.sql +++ /dev/null @@ -1,718 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -/* SequenceAnalysis-11.31-11.32.sql */ - -update sequenceanalysis.ref_aa_features set category = 'Protein Domain' where "name" in ( -'p17 Matrix', -'p24 Capsid', -'p2', -'p7 Nucleocapsid', -'p1', -'p6', -'Gag-Pol Fusion TF protein', -'Protease', -'p66 RT', -'RNAse H', -'Integrase', -'gp120', -'gp41', -'Signal', -'C1', -'V1', -'V2', -'C2', -'V3', -'C3', -'V4', -'C4', -'V5', -'C5', -'gp120', -'gp41' -); - ---add epitopes -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '4', '16', '581', '589', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '4', '16', '532', '540', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '4', '16', '725', '733', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '4', '16', '236', '244', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '4', '12', '967', '975', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '4', '15', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '4', '14', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Env KV9', 'KLTSCNTSV', '5', '42', '192', '200', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PY9', 'PIDNDTTSY', '5', '42', '183', '191', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RRGWEVLKY', '5', '42', '787', '795', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV10', 'VPTDPNPPEV', '5', '42', '75', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KLTPLCVTL', '5', '42', '121', '129', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV9', 'KLTSCNTSV', '5', '42', '192', '200', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RT10', 'RGPGRAFYTT', '5', '42', '311', '320', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV10', 'SLLNATAIAV', '5', '42', '813', '822', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV10', 'KLWVTVYYGV', '5', '42', '33', '42', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV9', 'LWVTVYYGV', '5', '42', '34', '42', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL9', 'QMHEDIISL', '5', '42', '103', '111', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IISLWDQSL', '5', '42', '108', '116', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('P18', 'RIQRGPGRAFVTIGK', '5', '42', '308', '322', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TLSQIVTKL', '5', '42', '341', '349', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI9', 'WLWYIKIFI', '5', '42', '678', '686', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FV9', 'FIMIVGGLV', '5', '42', '685', '693', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'RLRDLLLIV', '5', '42', '770', '778', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LLQYWSQEL', '5', '42', '799', '807', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV9', 'LLNATAIAV', '5', '42', '814', '822', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9', 'RVIEVLQRA', '5', '42', '828', '836', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL17', 'RLVSGFLALAWDDLRSL', '5', '42', '747', '763', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9', 'RIRQGLERA', '5', '42', '846', '854', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TVYYGVPVW', '5', '42', '37', '45', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK11', 'VTVYYGVPVWK', '5', '42', '36', '46', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TVYYGVPVWK', '5', '42', '37', '46', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TTLFCASDAK', '5', '42', '50', '59', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK9', 'TLFCASDAK', '5', '42', '51', '59', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR11', 'RLRDLLLIVTR', '5', '42', '770', '780', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR14(gp41)', 'SYHRLRDLLLIVTR', '5', '42', '767', '780', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR11', 'RLRDLLLIVTR', '5', '42', '770', '780', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RW9', 'RIKQIINMW', '5', '42', '419', '427', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9(gp41)', 'ERYLKDQQL', '5', '42', '584', '592', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VH20', 'VLSIVNRVRQGYSPLSFQTH', '5', '42', '701', '720', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TF17', 'TVYYGVPVWKEAKTTLF', '5', '42', '37', '53', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TVYYGVPVMK', '5', '42', '37', '46', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9(gp41)', 'IVTRIVELL', '5', '42', '777', '785', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('gp41 SV10', 'SLLNATDIAV', '5', '42', '813', '822', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK11', 'VTVYYGVPVWK', '5', '42', '36', '46', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9', 'ERYLKDQQL', '5', '42', '584', '592', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SF9', 'SFNCGGEFF', '5', '42', '375', '383', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VT20', 'VLSIVNQVRRQGYSPLSFQT', '5', '42', '701', '719', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TA25', 'TEKLWVTVYYGVPVWKEATTTLFCA', '5', '42', '31', '55', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1283', 'TVYYGVPVWK', '5', '42', '37', '46', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PF14', 'PSSGGDLEITTHSF', '5', '42', '363', '376', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY9', 'AENLWVTVY', '5', '42', '31', '39', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YW9', 'YETEVHNVW', '5', '42', '61', '69', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY11', 'AAENLWVTVYY', '5', '42', '30', '40', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY9(gp120)', 'AENLWVTVY', '5', '42', '31', '39', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL9', 'DPNPQEVVL', '5', '42', '78', '86', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LPCRIKQII', '5', '42', '416', '424', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RI9', 'RAYRAILHI', '5', '42', '835', '843', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PK20', 'PIPIHYCAPAGFAILKCNNK', '5', '42', '212', '231', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GV15', 'GIWGCSGKLICTTAV', '5', '42', '594', '608', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GK9', 'GRRGWEALK', '5', '42', '786', '794', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TTVPWNVSW', '5', '42', '606', '614', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Gag ND32', 'NPPIPVGEIYKRWIILGLNKIVRMYSPTSILD', '5', '38', '253', '284', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSEELRSLY', '5', '38', '71', '79', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QS10', 'QLQPSLQTGS', '5', '38', '63', '72', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TV9', 'TLNAWVKVV', '5', '38', '151', '159', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GE11', 'GHQAAMQMLKE', '5', '38', '193', '203', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HR17', 'HPVHAGPIAPGQMREPR', '5', '38', '216', '232', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SM10', 'STLQEQIGWM', '5', '38', '241', '250', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MV9', 'MTNNPPIPV', '5', '38', '250', '258', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YVDRFYKTL', '5', '38', '296', '304', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV9', 'VLAEAMSQV', '5', '38', '362', '370', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SQVTNSATI', '5', '38', '368', '376', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FLGKIWPSHK', '5', '38', '434', '443', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ND32', 'NPPIPVGEIYKRWIILGLNKIVRMYSPTSILD', '5', '38', '253', '284', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EF10', 'EPFRDYVDRF', '5', '38', '291', '300', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('E9V', 'EMMTACQGV', '5', '38', '345', '353', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AA9', 'ATLEEMMTA', '5', '38', '341', '349', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SH20', 'SNFKGNKRMVKCFNCGKEGH', '5', '38', '381', '400', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FLGKIWPSHK', '5', '38', '433', '442', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK9', 'KIRLRPGGK', '5', '38', '18', '26', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IK10', 'IAKNCRAPRK', '5', '38', '401', '410', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY10', 'RLRPGGKKKY', '5', '38', '20', '29', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CR9', 'CGKEGHIAR', '5', '38', '395', '403', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK10', 'LARNCRAPRK', '5', '38', '401', '410', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A*3101 KR9', 'KIWPSYKGR', '5', '38', '436', '444', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A68-QV9', 'QVSQNYPIV', '5', '38', '127', '135', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV18', 'LKDTINEEAAEWDRLHPV', '5', '38', '201', '218', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DA9', 'DRFYKTLRA', '5', '38', '298', '306', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DLNTMLNTV', '5', '38', '183', '191', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VF9 (p24)', 'VKVIEEKAF', '5', '38', '156', '32', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9(24)', 'GHQAAMQML', '5', '38', '193', '201', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WP15', 'WIILGLNKIVRMYSP', '5', '38', '265', '279', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GLNKIVRMY', '5', '38', '269', '277', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-YL9(p24)', 'YVDRFFKTL', '5', '38', '296', '304', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KALGPAATL', '5', '38', '335', '343', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL10', 'VHQAISPRTL', '5', '38', '143', '152', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HL9', 'HQAISPRTL', '5', '38', '144', '152', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ISPRTLNAW', '5', '38', '147', '155', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FRDYVDRFYK', '5', '38', '293', '302', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TPQDLNTML', '5', '38', '180', '188', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9(p24)', 'GHQAAMQML', '5', '38', '193', '201', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HA9(p24)', 'HPVHAGPIA', '5', '38', '216', '224', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NL13', 'NANPDCKTILRAL', '5', '38', '324', '337', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SP15', 'SGGELDRWEKIRLRP', '5', '38', '9', '23', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR15', 'SLYNTVATLYCVHQR', '5', '38', '77', '91', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM15', 'KVVEEKAFSPEVIPM', '5', '38', '157', '171', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV9(p24)', 'EEKAFSPEV', '5', '38', '160', '168', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ID15', 'IPMFSALSEGATPQD', '5', '38', '169', '183', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SM15', 'SALSEGATPQDLNTM', '5', '38', '173', '187', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL10', 'LSEGATPQDL', '5', '38', '175', '184', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI15', 'AAEWDRVHPVHAGPI', '5', '38', '209', '223', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NI15', 'NPPIPVGEIYKRWII', '5', '38', '253', '267', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FE15', 'FRDYVDRFYKTLRAE', '5', '38', '293', '307', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL11', 'RDYVDRFYKTL', '5', '38', '294', '304', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RE15', 'RAEQASQEVKNWMTE', '5', '38', '305', '319', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW11(p24)', 'AEQASQEVKNW', '5', '38', '306', '316', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QEPIDKELY', '5', '38', '476', '484', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY-9', 'LYNTVATLY', '5', '38', '78', '86', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ET20', 'EPFRDYVDRFFKTLRAEQAT', '5', '38', '291', '310', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL15', 'VQNANPDCKTILKAL', '5', '38', '323', '337', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NI9', 'NANPDSKTI', '5', '38', '325', '333', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK15', 'KIRLRPGGKKKYKLK', '5', '38', '18', '32', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF-11', 'LVWASRELERF', '5', '38', '34', '44', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSEELRSLY', '5', '38', '71', '79', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RSLYNTVATLY', '5', '38', '76', '86', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK9', 'KTQQAAADK', '5', '38', '114', '122', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GP10', 'GQMVHQAISP', '5', '38', '140', '149', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW10', 'AISPRTLNAW', '5', '38', '146', '155', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ISPRTLNAW', '5', '38', '147', '155', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NF20', 'NAWVKVVEEKAFSPEVIPMF', '5', '38', '153', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GAG-KI8', 'KAFSPEVI', '5', '38', '162', '169', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF11', 'KAFSPEVIPMF', '5', '38', '162', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSPEVIPMF', '5', '38', '164', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV15', 'EGATPQDLNTMLNTV', '5', '38', '177', '191', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TINEEAAEW', '5', '38', '204', '212', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW10', 'TSTLQEQIGW', '5', '38', '240', '249', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VQ15', 'VDRFYKTLRAEQASQ', '5', '38', '297', '311', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YT20', 'YKTLRAEQASQEVKNWMTET', '5', '38', '301', '320', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW9', 'QASQEVKNW', '5', '38', '308', '316', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '5', '107', '241', '249', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase AR9', 'AVFIHNFKR', '5', '107', '179', '187', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAMASDFNL', '5', '107', '20', '28', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LR28', 'LLWKGEGAV', '5', '107', '241', '249', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL9', 'QVRDQAEHL', '5', '107', '164', '172', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IK11', 'ILKLAGRWPVK', '5', '107', '101', '111', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QK10', 'QMAVFIHNFK', '5', '107', '177', '186', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AR9', 'AVFIHNFKR', '5', '107', '179', '187', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK10', 'AVFIHNFKRK', '5', '107', '179', '188', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1264', 'AVFIHNFKRK', '5', '107', '179', '188', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PR18', 'PAETGQETAYFILKLAGR', '5', '107', '90', '107', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9', 'ETAYFILKL', '5', '107', '96', '104', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9(Integrase)', 'THLEGKIIL', '5', '107', '66', '74', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY9(Integrase)', 'IQQEFGIPY', '5', '107', '135', '143', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FY10(Integrase)', 'FKRKGGIGGY', '5', '107', '185', '194', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-RY9(Int)', 'RKAKIIRDY', '5', '107', '263', '271', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY8', 'KQEFGIPY', '5', '107', '136', '143', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY10', 'TKIQNFRVYY', '5', '107', '218', '227', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW11', 'QEEHEKYHSNW', '5', '107', '9', '19', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW10', 'EEHEKYHSNW', '5', '107', '10', '19', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY10', 'AETGQETAYY', '5', '107', '91', '100', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LPPVVAKEI', '5', '107', '28', '36', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SW9', 'STTVKAACW', '5', '107', '123', '131', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SW10', 'STTVKAACWW', '5', '107', '123', '132', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KTAVQMAVF', '5', '107', '173', '181', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Nef AL9', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GVGAVSRDL', '5', '43', '29', '37', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL10', 'VLEWRFDSRL', '5', '43', '180', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AFHHVAREL', '5', '43', '190', '198', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AA9', 'ALTSSNTAA', '5', '43', '42', '50', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ML9', 'MTYKAALDL', '5', '43', '79', '97', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('P10L', 'PLTFGWCFKL', '5', '43', '136', '145', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QK10', 'QVPLRPMTYK', '5', '43', '73', '82', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GAFDLSFFL', '5', '43', '83', '91', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AVDLSHFLK', '5', '43', '84', '92', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK9', 'DLSHFLKEK', '5', '43', '86', '94', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR10', 'SSLAFRHVAR', '5', '43', '187', '196', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A68-AL(Nef)', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9(Nef)', 'RMRRAEPAA', '5', '43', '19', '27', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-TY11(Nef)', 'TQGYFPDWQNY', '5', '43', '117', '127', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FT9', 'FFPDWKNYT', '5', '43', '120', '128', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-WF9(Nef)', 'WRFDSRLAF', '5', '43', '183', '191', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WF9', 'EVLQWKFDSRLALRH', '5', '43', '179', '193', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VM15', 'VLVWKFDSRLAFRHM', '5', '43', '180', '194', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LA15', 'LVWKFDSHLAFHHMA', '5', '43', '181', '195', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VR15', 'VWRFDSHLAFRHMAR', '5', '43', '182', '196', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WE15', 'WRFDSRLAFHHMARE', '5', '43', '183', '197', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RRQDILDLWVY', '5', '43', '105', '115', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QDILDLWIY', '5', '43', '107', '115', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GP16', 'GVRYPLTFGWCYKLVP', '5', '43', '132', '147', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RYP', 'RYPLTFGWCYK', '5', '43', '134', '144', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YPLTFGWCY', '5', '43', '135', '143', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KEKGGLEGL', '5', '43', '92', '100', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY11', 'KRQEILDLWVY', '5', '43', '105', '115', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RPQVPLRPMTY', '5', '43', '71', '81', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PY10', 'PQVPLRPMTY', '5', '43', '72', '81', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FT9', 'FFPDWKNYT', '5', '43', '120', '128', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY20', 'WKFDSRLAFHHMARELHPEY', '5', '43', '183', '202', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DSRLAFHHV', '5', '43', '186', '194', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AFHHVAREK', '5', '43', '190', '198', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KAAFDLSFF', '5', '43', '82', '90', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HTQGYFPDW', '5', '43', '116', '124', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HQ10', 'HTQGYFPDWQ', '5', '43', '116', '125', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY8', 'YFPDWQNY', '5', '43', '120', '127', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTPGPGIRY', '5', '43', '127', '135', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF14', 'GPGVRYPLTFGWCY', '5', '43', '130', '143', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV16', 'VRYPLTFGWCYKLVPV', '5', '43', '133', '148', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AAFDLSFFL', '5', '43', '83', '91', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YT9', 'YFPDWQNYT', '5', '43', '120', '128', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SPIETVPVKL', '5', '94', '158', '167', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '5', '94', '956', '964', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase AR9', 'AVFIHNFKR', '5', '94', '894', '902', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PW9', 'PTRRELQVW', '5', '94', '26', '34', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FSFPQITLW', '5', '94', '54', '62', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SPIETVPVKL', '5', '105', '3', '12', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL10', 'SPIETVPVKL', '5', '105', '3', '12', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AM9', 'ALVEICTEM', '5', '105', '33', '41', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV11', 'VLDVGDAYFSV', '5', '105', '108', '118', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL9', 'VIYQYMDDL', '5', '105', '179', '187', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YV9', 'YQYMDDLYV', '5', '105', '181', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK12', 'LLRWGLTTPDKK', '5', '105', '209', '220', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9', 'ILKEPVHGV', '5', '105', '309', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AV9', 'ALQDSGLEV', '5', '105', '485', '493', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV10', 'IYQYMDDLYV', '5', '105', '180', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KA9', 'KLVGKLNWA', '5', '105', '259', '267', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV10', 'EILKEPVGHV', '5', '105', '308', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PL9', 'PLVKLWYQL', '5', '105', '421', '429', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9', 'ILKEPVHGV', '5', '105', '309', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL17', 'EKDSWTVNDIQKLVGKL', '5', '105', '248', '264', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK16', 'TDSQYALGIIQAQPDK', '5', '105', '497', '512', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AIFQSSMTK', '5', '105', '158', '166', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QR9', 'QIYPGIKVR', '5', '105', '269', '277', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK11', 'ALVEICTEMEK', '5', '105', '33', '43', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NK9', 'NTPVFAIKK', '5', '105', '57', '65', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GK9', 'GIPHPAGLK', '5', '105', '93', '101', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MR9', 'MTKILEPFR', '5', '105', '164', '172', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK11', 'RMRGAHTNDVK', '5', '105', '356', '366', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Pol-KA9', 'KVYLAWVPA', '5', '105', '530', '538', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK11', 'KVYLAWVPAHK', '5', '105', '530', '540', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A32-PW1-(RT)', 'PIQKETWETW', '5', '105', '392', '401', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1274', 'NTPVFAIKKK', '5', '105', '57', '66', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AIFQSSMTK', '5', '105', '158', '166', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1267', 'FTTPDKKHQK', '5', '105', '214', '223', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GA10(RT)', 'GAETFYVDGA', '5', '105', '436', '445', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PR18', 'PYNTPVFAIKKKDSTKWR', '5', '105', '55', '72', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK18', 'FWEVQLGIPHPAGLKKKK', '5', '105', '87', '104', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DVKQLTEVV', '5', '105', '354', '372', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IS14', 'IVGAETFYVDGAAS', '5', '105', '434', '447', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL8', 'IRYQYNVL', '5', '105', '142', '149', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VTDSQYALGI', '5', '105', '496', '505', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-LY12(RT)', 'LVGKLNWASQIY', '5', '105', '260', '271', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY10(RT)', 'ILKEPVHGVY', '5', '105', '309', '318', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10(RT)', 'VTDSQYALGI', '5', '105', '496', '505', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IPLTEEAEL', '5', '105', '293', '301', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY9', 'KQNPDIVIY', '5', '105', '173', '181', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY10', 'NETPGIRYQY', '5', '105', '137', '146', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY9', 'NPEIVIYQY', '5', '105', '175', '183', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL18', 'VSLTETTNQKTELQAIQL', '5', '105', '467', '484', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY9', 'NNETPGVRY', '5', '105', '136', '144', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL10', 'TELQAIQLAL', '5', '105', '477', '486', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PM16', 'PISPIETVPVKLKPGM', '5', '105', '1', '16', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI11', 'LPQGWKGSPAI', '5', '105', '149', '159', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL17', 'QDSGSEVNIVTDSQYAL', '5', '105', '487', '503', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI15', 'EVNIVTDSQYALGII', '5', '105', '492', '506', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL16', 'ALGIIQAQPDKSESEL', '5', '105', '502', '517', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER9', 'EELRQHLLR', '5', '105', '203', '211', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW10', 'EELRQHLLRW', '5', '105', '203', '212', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW10', 'TWETWWTEYW', '5', '105', '397', '406', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SEVNIVTDSQY', '5', '105', '491', '501', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI9', 'EKEGKISKI', '5', '105', '42', '50', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NM10', 'NPDIVIYQYM', '5', '105', '175', '184', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EF9', 'EPIVGAETF', '5', '105', '432', '440', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL8', 'DAYFSVPL', '5', '105', '113', '120', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QGWKGSPAI', '5', '105', '151', '159', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IPLTEEAEL', '5', '105', '293', '301', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LRWGFCTPDKK', '5', '105', '210', '220', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PIV', 'PIVLPEKDSW', '5', '105', '243', '252', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'IVLPEKDSW', '5', '105', '244', '252', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KW10', 'KITTESIVIW', '5', '105', '374', '383', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KW9', 'KLPIWKETW', '5', '105', '390', '398', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QF10', 'QATWIPEWEF', '5', '105', '407', '416', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSVPLDEDF', '5', '105', '116', '124', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QRPLVTIKI', '5', '104', '7', '15', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KI10', 'KMIGGIGGFI', '5', '104', '45', '54', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LVGPTPVNI', '5', '104', '76', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('L10V', 'LLDTGADDTV', '5', '104', '23', '32', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VLVGPTPVNI', '5', '104', '75', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK10', 'VTIKIGGQLK', '5', '104', '11', '20', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9(Protease)', 'ITLWQRPLV', '5', '104', '3', '11', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL9', 'DTVLEEMNL', '5', '104', '30', '38', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GKKAIGTVL', '5', '104', '68', '76', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B*1501 TF9', 'TQIGCTLNF', '5', '104', '91', '99', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW9', 'EEMNLPGRW', '5', '104', '34', '42', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IG10', 'IEICGHKAIG', '5', '104', '64', '73', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW9', 'EEMNLPGRW', '5', '104', '34', '42', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IG10', 'IEICGHKAIG', '5', '104', '64', '73', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QG10', 'QRPLVTVKIG', '5', '104', '7', '16', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV8', 'KAIGTVLV', '5', '104', '70', '77', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Rev LL9', 'LQLPPLERL', '5', '40', '73', '81', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY9', 'ISERILSTY', '5', '40', '55', '63', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LQLPPLERL', '5', '40', '73', '81', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'ILVESPAVL', '5', '40', '102', '110', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY9', 'TVRLIKFLY', '5', '40', '15', '23', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER10', 'ERILSTYLGR', '5', '40', '57', '66', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR9', 'RILSTYLGR', '5', '40', '58', '66', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1277', 'PTVLESGTKE', '5', '40', '107', '116', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IHSISERIL', '5', '40', '52', '60', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL17', 'ILSTCLGRPAEPVPLQL', '5', '40', '59', '75', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY10', 'KTGRLIKLLY', '5', '40', '14', '23', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LRAVRIIKI', '5', '40', '13', '21', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1279', 'TACNNCYCKK', '5', '39', '20', '29', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IR11', 'ITKGLGISYGR', '5', '39', '39', '49', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-FY10(Tat)', 'FQTKGLGISY', '5', '39', '38', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VCFTTKGLGI', '5', '39', '36', '45', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Tat MY9', 'MTKGLGISY', '5', '39', '39', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY8', 'TKGLGISY', '5', '39', '40', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PW9', 'PVDPRLEPW', '5', '39', '3', '11', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK10', 'RIRTWKSLVK', '5', '44', '17', '26', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HK9', 'HMYISKKAK', '5', '44', '28', '36', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK11', 'KTKPPLPSVKK', '5', '44', '158', '168', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER10', 'EVHIPLGEAR', '5', '44', '54', '63', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LA18', 'LIHMHYFDCFADSAIRKA', '5', '44', '106', '123', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI8', 'WHLGHVSI', '5', '44', '79', '87', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RI17', 'RHHYESRHPKVSSEVHI', '5', '44', '41', '57', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SF13', 'SQ/KRASGQFY/F', '5', '44', '32', '40', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL18', 'VSIEWRLRRYSTQVDPGL', '5', '44', '85', '102', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LADQLIHLHY', '5', '44', '102', '111', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II10', 'IPLGDAKLII', '5', '44', '57', '66', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B57-IF9', 'ISKKAKGWF', '5', '44', '31', '39', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW9', 'VTKLTEDRW', '5', '44', '166', '174', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW18', 'LQTGERDWHLGHGVSIEW', '5', '44', '72', '89', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'AIIRILQQL', '5', '45', '59', '67', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AIIRILQQL', '5', '45', '59', '67', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Vpr 62', 'RILQQLLFI', '5', '45', '62', '70', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DR11', 'DTWAGVEAIIR', '5', '45', '52', '65', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV10', 'ETYGDTWTGV', '5', '45', '48', '57', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI9', 'EAVRHFPRI', '5', '45', '29', '37', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW9', 'AVRHFPRIW', '5', '45', '30', '38', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL17', 'STMVDMGHLRLLDVNDL', '5', '41', '66', '82', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '3', '28', '858', '866', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '3', '28', '858', '866', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '3', '20', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b/c', 'RRRLTARGLL', '3', '29', '245', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'ARRHRILDIYL', '3', '29', '136', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '3', '29', '103', '111', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '3', '21', '591', '598', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '3', '21', '50', '60', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '3', '21', '1007', '1015', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Rev LL9', 'LQLPPLERL', '3', '26', '73', '81', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '3', '22', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '3', '24', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '3', '23', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '1', '8', '788', '795', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '1', '8', '620', '628', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL8', 'CAPPGYAL', '1', '8', '233', '240', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '1', '8', '620', '628', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ST10', 'SSPPSYFQQT', '1', '8', '726', '735', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTIISLNKY', '1', '8', '296', '304', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM9', 'KTVLPVTIM', '1', '8', '317', '325', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QTIVKHPRY', '1', '8', '359', '367', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF10', 'GTSRNKRGVF', '1', '8', '519', '528', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY9', 'SSWPWQIEY', '1', '8', '760', '768', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '1', '8', '788', '795', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GI8', 'GDYKLVEI', '1', '8', '495', '502', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF11', 'LRCNDTNYSGF', '1', '8', '241', '251', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LRTELTYLQY', '1', '8', '816', '825', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FHEAVQAVW', '1', '8', '830', '838', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '1', '8', '573', '581', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '1', '8', '524', '532', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '1', '8', '717', '725', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '1', '8', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '1', '8', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '1', '8', '817', '825', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '1', '8', '233', '241', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '1', '1', '181', '189', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '1', '1', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '1', '1', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '1', '1', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '1', '1', '71', '79', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '1', '1', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '1', '1', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW9', 'LSPRTLNAW', '1', '1', '149', '157', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QNPIPVGNI', '1', '1', '254', '262', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF8', 'LAPVPIPF', '1', '1', '372', '379', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '1', '1', '71', '79', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SEGCTPYDI', '1', '1', '178', '186', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '1', '1', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLDKGLSSLSC', '1', '9', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '1', '9', '103', '111', 'Mafa-A1*06301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LLRARGETY', '1', '9', '20', '28', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TM10', 'TMSYKLAIDM', '1', '9', '110', '119', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTSGPGIRY', '1', '9', '159', '167', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KTFGWLWKL', '1', '9', '169', '177', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTYEAYVRY', '1', '9', '221', '229', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LM9', 'LTARGLLNM', '1', '9', '248', '256', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KI9', 'KEKGGLEGI', '1', '9', '124', '132', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'IRYPKTFGW', '1', '9', '165', '173', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MW9', 'MHPAQTSQW', '1', '9', '195', '203', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW9', 'QTSQWDDPW', '1', '9', '199', '207', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'RRHRILDIYL', '1', '9', '137', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9-2', 'RRLTARGLL', '1', '9', '246', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b', 'RRLTARGLL', '1', '9', '246', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9c', 'RRRLTARGL', '1', '9', '245', '253', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b/c', 'RRRLTARGLL', '1', '9', '245', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'ARRHRILDIYL', '1', '9', '136', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '1', '9', '103', '111', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '1', '2', '1001', '1011', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV10', 'LGPHYTPKIV', '1', '2', '147', '156', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QV9', 'QVPKFHLPV', '1', '2', '592', '600', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9', 'STPPLVRLV', '1', '2', '625', '633', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9-2', 'SGPKANIIV', '1', '2', '696', '704', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSIPLDEEF', '1', '2', '324', '332', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LSQEQEGCY', '1', '2', '518', '526', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL8', 'YHSNVKEL', '1', '2', '782', '789', 'Mamu-A1*00701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AERKQREAL', '1', '2', '92', '100', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI11', 'AEAEYEENKII', '1', '2', '507', '517', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MF8', 'MRHVLEPF', '1', '2', '372', '379', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FQWMGYELW', '1', '2', '435', '443', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW10', 'VWEQWWTDYW', '1', '2', '604', '613', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '1', '2', '592', '599', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '1', '2', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '1', '2', '1008', '1016', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRLRLIHLL', '1', '7', '12', '20', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRRWQQLL', '1', '7', '44', '51', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '1', '6', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA8', 'QLYRPLEA', '1', '6', '42', '49', 'Mafa-B*5101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'STPESANL', '1', '6', '28', '35', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '1', '3', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPNYADI', '1', '3', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '1', '3', '97', '104', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '1', '3', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPNYADILLHS', '1', '3', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA9', 'QVPSLQYLA', '1', '3', '144', '152', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ITWYSKNFW', '1', '3', '89', '97', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '1', '3', '97', '104', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY10', 'YADILLHSTY', '1', '3', '104', '113', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HFKVGWAWW', '1', '3', '44', '52', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW8', 'HLEVQGYW', '1', '3', '66', '73', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CY9', 'CRFPRAHKY', '1', '3', '135', '143', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '1', '3', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRDNRRGL', '1', '3', '172', '179', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '1', '3', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCIHSRIGQPGG', '1', '5', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RILQRALFM', '1', '5', '63', '71', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'REPWDEWVV', '1', '5', '13', '21', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '1', '5', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '1', '4', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '1', '4', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II11', 'IPPGNSGEETI', '1', '4', '8', '18', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '1', '4', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL8', 'CAPPGYAL', '13', '82', '233', '240', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '13', '82', '620', '628', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ST10', 'SSPPSYFQQT', '13', '82', '726', '735', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTIISLNKY', '13', '82', '296', '304', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM9', 'KTVLPVTIM', '13', '82', '317', '325', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QTIVKHPRY', '13', '82', '359', '367', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF10', 'GTSRNKRGVF', '13', '82', '519', '528', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY9', 'SSWPWQIEY', '13', '82', '760', '768', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '13', '82', '788', '795', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GI8', 'GDYKLVEI', '13', '82', '495', '502', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF11', 'LRCNDTNYSGF', '13', '82', '241', '251', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LRTELTYLQY', '13', '82', '816', '825', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FHEAVQAVW', '13', '82', '830', '838', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '13', '82', '573', '581', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '13', '82', '524', '532', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '13', '82', '717', '725', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '13', '82', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '13', '82', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '13', '82', '817', '825', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '13', '82', '233', '241', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '13', '75', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '13', '75', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '13', '75', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '13', '75', '181', '189', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '13', '75', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '13', '75', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW9', 'LSPRTLNAW', '13', '75', '149', '157', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QNPIPVGNI', '13', '75', '254', '262', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF8', 'LAPVPIPF', '13', '75', '372', '379', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '13', '75', '71', '79', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SEGCTPYDI', '13', '75', '178', '186', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '13', '75', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '13', '75', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLDKGLSSLSC', '13', '83', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LLRARGETY', '13', '83', '20', '28', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRSRPSGDL', '13', '83', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '13', '83', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '13', '76', '1001', '1011', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV10', 'LGPHYTPKIV', '13', '76', '147', '156', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QV9', 'QVPKFHLPV', '13', '76', '592', '600', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9', 'STPPLVRLV', '13', '76', '625', '633', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9-2', 'SGPKANIIV', '13', '76', '696', '704', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSIPLDEEF', '13', '76', '324', '332', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LSQEQEGCY', '13', '76', '518', '526', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL8', 'YHSNVKEL', '13', '76', '782', '789', 'Mamu-A1*00701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AERKQREAL', '13', '76', '92', '100', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI11', 'AEAEYEENKII', '13', '76', '507', '517', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MF8', 'MRHVLEPF', '13', '76', '372', '379', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FQWMGYELW', '13', '76', '435', '443', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW10', 'VWEQWWTDYW', '13', '76', '604', '613', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '13', '76', '592', '599', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '13', '76', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '13', '76', '1008', '1016', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRLRLIHLL', '13', '81', '12', '20', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRRWQQLL', '13', '81', '44', '51', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '13', '80', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA8', 'QLYRPLEA', '13', '80', '42', '49', 'Mafa-B*5101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'STPESANL', '13', '80', '28', '35', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPNYADI', '13', '77', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '13', '77', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPNYADILLHS', '13', '77', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '13', '77', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA9', 'QVPSLQYLA', '13', '77', '144', '152', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ITWYSKNFW', '13', '77', '89', '97', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '13', '77', '97', '104', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY10', 'YADILLHSTY', '13', '77', '104', '113', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HFKVGWAWW', '13', '77', '44', '52', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW8', 'HLEVQGYW', '13', '77', '66', '73', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CY9', 'CRFPRAHKY', '13', '77', '135', '143', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '13', '77', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRDNRRGL', '13', '77', '172', '179', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '13', '77', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCIHSRIGQPGG', '13', '79', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RILQRALFM', '13', '79', '63', '71', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'REPWDEWVV', '13', '79', '13', '21', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '13', '79', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '13', '78', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '13', '78', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II11', 'IPPGNSGEETI', '13', '78', '8', '18', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '13', '78', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRAY', '2', '37', '790', '797', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '2', '37', '622', '630', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '2', '37', '575', '583', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '2', '37', '526', '534', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '2', '37', '719', '727', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '2', '37', '870', '878', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '2', '37', '870', '878', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '2', '37', '819', '827', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '2', '37', '235', '243', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '2', '10', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '2', '10', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '2', '10', '71', '79', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '2', '10', '181', '189', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '2', '10', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '2', '10', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '2', '10', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '2', '10', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLGKGLSSRSC', '2', '36', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '2', '30', '997', '1007', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '2', '30', '588', '595', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '2', '30', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '2', '30', '1004', '1012', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'TTPESANL', '2', '34', '28', '35', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '2', '34', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '2', '31', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPDY', '2', '31', '97', '104', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPDYADI', '2', '31', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '2', '31', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPDYADILLHS', '2', '31', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '2', '31', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCNHSRIGQPGG', '2', '33', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '2', '33', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '2', '32', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AE11', 'AFEWLNRTVEE', '2', '32', '21', '31', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '2', '32', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '2', '32', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '12', '74', '581', '589', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '12', '74', '532', '540', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '12', '74', '725', '733', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '12', '74', '238', '246', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '12', '67', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '12', '68', '970', '978', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '12', '70', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); - -/* SequenceAnalysis-11.32-11.33.sql */ - -CREATE TABLE sequenceanalysis.aligners ( - RowId INT IDENTITY(1,1) NOT NULL, - - name varchar(100) not null, - displayname varchar(100), - description text, - jsonconfig text, - - Created DATETIME, - Modified DATETIME, - - CONSTRAINT PK_aligners PRIMARY KEY (rowId) -); - -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bowtie', 'Bowtie', 'Bowtie is a fast aligner often used for short reads. Disadvantages are that it does not perform gapped alignment. It will return a single hit for each read.', '[{"name": "bowtie.max_seed_mismatches","fieldLabel": "Max Seed Mismatches","value": 3},{"name": "bowtie.seed_length","fieldLabel": "Seed Length","value": 20}]'); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('lastz', 'Lastz', 'Lastz has performed well for both sequence-based genotyping and viral analysis. ', '[{"name": "lastz.identity","fieldLabel": "Min Pct Identity","renderData": {"helpPopup": "The minimum percent identity required per alignment for that match to be included"},"value": 98},{"name": "lastz.continuity","fieldLabel": "Percent Continuity","renderData": {"helpPopup": "Continuity is the percentage of alignment columns that are not gaps. Alignment blocks outside the given range are discarded."},"value": 90}]'); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa', 'BWA', 'BWA is a commonly used aligner, optimized for shorter reads. It also supports paired-end reads.', ''); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa-sw', 'BWA-SW', 'BWA-SW uses a different algorithm than BWA that is better suited for longer reads. By design it will only return a single hit for each read. It it currently recommended for viral analysis and other applications that align longer reads, but do not require retaining multiple hits.', ''); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('mosaik', 'Mosaik', 'Mosaik is suitable for longer reads and has the option to retain multiple hits per read. The only downside is that it can be slower. When this pipeline was first written, this aligner was preferred for sequence-based genotyping and similar applications which require retaining multiple hits. It supports paired end reads. The aligner is still good; however, Lastz also seems to perform well for SBT.', '[{"name":"mosaik.output_multiple","fieldLabel":"Retain All Hits","xtype":"checkbox","renderData":{"helpPopup":"If selected, all hits above thresholds will be reported. If not, only a single hit will be retained."},"checked":true},{"name":"mosaik.max_mismatch_pct","fieldLabel":"Max Mismatch Pct","renderData":{"helpPopup":"The maximum percent of bases allowed to mismatch per alignment. Note: Ns are counted as mismatches"},"value":0.02,"minValue":0,"maxValue":1},{"name":"mosaik.hash_size","fieldLabel":"Hash Size","renderData":{"helpPopup":"The hash size used in alignment (see Mosaik documentation). A large value is preferred for sequences expected to be highly similar to the reference"},"minValue":0,"value":32},{"name":"mosaik.max_hash_positions","fieldLabel":"Max Hash Positions","renderData":{"helpPopup":"The maximum number of hash matches that are passed to local alignment."},"minValue":0,"value":200},{"name":"mosaik.align_threshold","fieldLabel":"Alignment Threshold","renderData":{"helpPopup":"The alignment score required for an alignment to continue to local alignment. Because the latter is slow, a higher value can improve speed."},"value":55}]'); - -/* SequenceAnalysis-11.33-11.34.sql */ - -delete from sequenceanalysis.ref_aa_sequences where (select name from sequenceanalysis.ref_nt_sequences n where n.rowid = ref_aa_sequences.ref_nt_id) = 'SIVmac239cy0163'; -delete from sequenceanalysis.ref_nt_sequences where name = 'SIVmac239cy0163'; -delete from sequenceanalysis.virus_strains where virus_strain = 'SIVmac239cy0163'; - -alter table sequenceanalysis.sequence_readsets - add machine_run_id varchar(200); - -alter table sequenceanalysis.sequence_readsets - add fileid2 integer; - -alter table sequenceanalysis.sequence_readsets - add raw_input_file2 integer; - -alter table sequenceanalysis.sequence_readsets - add qc_file2 integer; - -alter table sequenceanalysis.sequence_analyses - add inputfile2 integer; - -delete from sequenceanalysis.aligners where name = 'bwa'; -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa', 'BWA', 'BWA is a commonly used aligner, optimized for shorter reads. It also supports paired-end reads.', '[{"xtype":"hidden","name":"pairedEnd","value":"true"}]'); - -delete from sequenceanalysis.aligners where name = 'mosaik'; -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('mosaik', 'Mosaik', 'Mosaik is suitable for longer reads and has the option to retain multiple hits per read. The only downside is that it can be slower. When this pipeline was first written, this aligner was preferred for sequence-based genotyping and similar applications which require retaining multiple hits. It supports paired end reads. The aligner is still good; however, Lastz also seems to perform well for SBT.', '[{"xtype":"hidden","name":"pairedEnd","value":"true"},{"name":"mosaik.output_multiple","fieldLabel":"Retain All Hits","xtype":"checkbox","renderData":{"helpPopup":"If selected, all hits above thresholds will be reported. If not, only a single hit will be retained."},"checked":true},{"name":"mosaik.max_mismatch_pct","fieldLabel":"Max Mismatch Pct","renderData":{"helpPopup":"The maximum percent of bases allowed to mismatch per alignment. Note: Ns are counted as mismatches"},"value":0.02,"minValue":0,"maxValue":1},{"name":"mosaik.hash_size","fieldLabel":"Hash Size","renderData":{"helpPopup":"The hash size used in alignment (see Mosaik documentation). A large value is preferred for sequences expected to be highly similar to the reference"},"minValue":0,"value":32},{"name":"mosaik.max_hash_positions","fieldLabel":"Max Hash Positions","renderData":{"helpPopup":"The maximum number of hash matches that are passed to local alignment."},"minValue":0,"value":200},{"name":"mosaik.align_threshold","fieldLabel":"Alignment Threshold","renderData":{"helpPopup":"The alignment score required for an alignment to continue to local alignment. Because the latter is slow, a higher value can improve speed."},"value":55}]'); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.10-12.20.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.10-12.20.sql deleted file mode 100644 index 28fd1eb8f..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.10-12.20.sql +++ /dev/null @@ -1,389 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -/* SequenceAnalysis-12.10-12.11.sql */ - -CREATE TABLE sequenceanalysis.instruments ( - rowId INT IDENTITY(1,1) NOT NULL, - displayName varchar(200), - identifier varchar(200), - platform varchar(200), - location varchar(200), - - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_instruments PRIMARY KEY (rowId) -); - -CREATE TABLE sequenceanalysis.instrument_runs ( - rowId INT IDENTITY(1,1) NOT NULL, - runDate DATETIME, - name varchar(200), - instrumentId integer, - comment varchar(4000), - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_instrument_runs PRIMARY KEY (rowId) -); - -CREATE TABLE sequenceanalysis.quality_metrics ( - rowid INT IDENTITY(1,1) NOT NULL, - runId integer, - dataId integer, - metricName varchar(200), - metricValue float, - qualValue varchar(100), - comment varchar(4000), - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_quality_metrics PRIMARY KEY (rowId) -); - -CREATE TABLE sequenceanalysis.quality_metrics_types ( - type varchar(200), - CONSTRAINT PK_quality_metrics_types PRIMARY KEY (type) -); - -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Total Sequences'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Filtered Sequences'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Avg Sequence Length'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Min Sequence Length'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Max Sequence Length'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('%GC'); - -ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN machine_run_id; -ALTER TABLE sequenceanalysis.sequence_readsets ADD instrument_run_id integer; -ALTER TABLE sequenceanalysis.sequence_readsets ADD runid integer; - -/* SequenceAnalysis-12.11-12.12.sql */ - ---new drug resistance mutation. delete previous in case -DELETE from sequenceanalysis.drug_resistance WHERE -ref_nt_id = 5 AND -ref_aa_id = 105 and -class = 'NRTI' AND -aa_position = 138 -; - -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES -(5, 105, 'NRTI', 138, 0, 'E', 'K', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES -(5, 105, 'NRTI', 138, 0, 'E', 'K', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES -(5, 105, 'NRTI', 138, 0, 'E', 'K', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES -(5, 105, 'NRTI', 138, 0, 'E', 'K', 'RPV'); - ---insert new ref strains -delete from sequenceanalysis.virus_strains where virus_strain ='GHNJ196'; -insert into sequenceanalysis.virus_strains (virus_strain,genbank,species) values ('GHNJ196', 'AB231898', 'HIV'); - -delete from sequenceanalysis.ref_nt_sequences where name ='GHNJ196'; -insert into sequenceanalysis.ref_nt_sequences (name,category,subset,mol_type,species,genbank,sequence) values -('GHNJ196', 'Virus', 'GHNJ196', 'RNA', 'HIV', 'AB231898', 'TGGATGGGCTAATTTACTCCAAGAAAAGACAGGAGATCCTTGATCTGTGGGTCTATCACACACAAGGATTCTTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATACCCACTGACCTTTGGATGGTGCTTCAAACTAGTACCAATAGATCCAGCAGAGGTAGAGGAAGCCAATGAAGGAGAGAACAACGTCTTATTACACCCCATCTGCCAGCATGGAATGGATGATGAAGACAGAGAAGTACTGGTCTGGAAGTTTGACAGCCGCCTGGCATTCACACACACAGCAAGAGAGCTGCATCCGGAGTTTTACAAAGACTGTTGACACAGAAGTTGCTGACAGGGACTTTCTGCCTGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTGTGGGAGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTCTAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCAATTTAGTCTTGGTAAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCGGAAGTTAATAGGGACGCGAAAGCGAAAGTTCCAGAGAAGTATCTCGACGCACGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTGCGGCCAGGGGGAAAGAAACAGTATAAACTAAAACATATAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCTCTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAGCTATTGGAACAGTTACAATCAACTCTCAGGACAGGATCAGAGGAACTTAAATCCTTATATAATACAATAGCAACCCTTTGGTGCGTACATCAAAGGATAGACATAAGAGACACCAAGGAAGCCTTAGATAAAATAGAGGAAGCTCAAAATAAGAGCAAACAAAAGACACAGCAGGCAGCAGCTGCCACAGGAAGCAGCAACCAAGTAAGAGTCAGCAGCCAAAATTTCCCTATAGTGCAAAATGCACAAGGGCAAATGATACATCAGTCCATGTCACCTAGGACTTTAAATGCATGGGTGAAGGTAATAGAAGAAAAGGGTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCGCCCCACAAGATTTAAATATGATGCTAAACATAGTGGGGGGACATCAGGCAGCAATGCAGATGTTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGAGTACATCCAGTACATGCAGGGCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGGGTGGATGACAAGCAATCCACCTATCCCAGTGGGAGAAATTTATAAAAGATGGATAGTTCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGACAGGTTCTTTAAAACTTTAAGAGCTGAACAAGCTACACAGGATGTAAAGAACTGGATGACAGAAACCTTGCTGGTCCAAAATGCTAATCCAGACTGTAAGACCATTTTAAGAGCATTAGGACCAGGGGCTTCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCATAAGGCAAGGGTTTTGGCTGAAGCAATGAGTCAAGCACAACAGTCCAATGTAATGATGCAGAGAGGCAATTTTAGGGGCCAGAGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGGCCCCTAGGAAAAGGGGTTGTTGGAAGTGTGGGAAGGAAGGACACCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGAAATTTTCCTCAGAGCAGACCGGAACCATCAGCCCCACCAGCAGAGAGCTTGGGGATGGGGGAAGAGGTAGCCTCAACCCCGAAGCAGGAGCCGGGGGACAAGGGAATATATCCTCCCTTAACTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGAATAGGGTGTCAGCTAATAGAAGCCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAAAAGTAGAATTACCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTTATAGAAATTTGTGGAAAAAGGGCCATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGGAATATGTTGACTCAGATTGGCTGTACTTTAAATTTTCCAATTAGTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGACATTTGTACAGAAATGGAAAAGGAAGGACAAATTTCAAAAATTGGCCCTGAAAATCCCTACAATACTCCAGTATTTGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAGCTTAATAAAAGACCTCAAGACTTCTGGGAGGTCCAATTAGGAATACCTCACCCAGCAGGATTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCTTACATGAAGACTTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCAGGAATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGGCAAGCATGACAAAAATCTTAGAGCCCTTTAGAACAAACAATCCAGAAATGGTGATCTACCAATACATGGATGATTTATATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGCAAAAATAGAGGAGTTGAGAGAACATCTACTGAAATGGGGATTTACCACACCAGACAAAAAACATCAGAAGGAACCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAACATATAGAACTGCCAGAAAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCGAGTCAAATTTATCCTGGAATTAAAGTAAGGCAACTGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTAACACTGACTGAGGAAGCAGAATTAGAATTGGCAGAGAACAGGGAAATTCTAAAAGAACCTGTACATGGAGTCTACTATGACCCAGCAAAAGACTTAGTAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATCAGGAACCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGCCCACACTAATGATGTAAAACAATTAACAGAGGTAGTACAAAAAGTGGCTACAGAGAGCATAATAATATGGGGAAAGACCCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGATGGATTATTGGCAAGCTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGTACCAATTAGAAAAAGACCCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCAAATAGGGAGACTAAACTAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTGGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATTCATCTAGCCTTGCAAGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAGTATGCATTAGGAATTATTCAGGCACAACCAGACAAGAGTGACTCAGAAATAGTCAATCTAATAATAGAAAAACTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAGAGTACTATTTTTAGATGGCATAGATAAAGCCCAAGAAGAACATGAAAGATATCATAGCAATTGGAGAGCAATGGCTAATGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTGGCTACATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAAACAGCATACTTTATATTAAAGTTAGCAGGAAGATGGCCAGTGAGAGTAATACACACAGACAATGGCAGCAATTTCACCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAGATGTCAAACAAGAATTTGGAATTCCCTACAATCCCCAAAGCCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTCAGGGATCAAGCTGAGCACCTTAAGACAGCAGTACAGATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCATCAGACATACAAACTAAAGAACTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCCATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAAGTAGTACCAAGGAGAAAAGCAAAAATCATTAAGGATTATGGAAAACAGATGGCAGGTGATGACTGTGTGGCAGGTAGACAGGATGAAGATTAGGACATGGAACAGTTTAGTAAAGCATCATATGTATGTCTCTAAGAAAGCTAAGGATTGGTTTTATAGACATCATTTTGAAAGTAGACATCCAAAAGCAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAGTAGTAAGAACCTATTGGGGTTTGAATACAGGAGAAAGAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGGCAGAGAAGGTATAGCACACAAATAGATCCTGACCTAGCTGACCAACTGATTCACCTGTATTATTTTGACTGTTTTTCAGAATCTGCCATAAGGAAAGTCCTATTAGGACAAGTAGTTAGACCTAGTTGTGAATATCAAGCAGGACACAGTAAGGTAGGATCGCTACAATATTTGGCACTGAAAGCATTAGTAGCACCAACAAGGAGAAAGCCACCTTTACCTAGTGTTAAGAAGTTAACAGAAGATCGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAACCGTCCAATCAATGGACACTAGAACTGTTAGAGGAGCTTAAACAAGAAGCTGTTAGACATTTTCCTAGGCCGTGGCTTCATGGATTAGGACAATATATCTATAACACATATGGGGACACTTGGGAAGGGGTTGAAGCTATAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATTCGAGGGAGAAGAGGCAGGAATGGATCTGGTAGATCCTAACCTAGATCCATGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAGCAAGTGTTATTGTAAAATATGCTGCTGGCATTGCCAATTGGGCTTTCTGAACAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACCCCGACGAGGAACTCCTCAGAACCGTCAGGATTATCAAAATCCTGCACCAAAGCAGTGAGTAGTGCTAATTAGTATATATGATGCAATCCTTAGTAATAGCTGCAATAGTAGGACTAGTAGTAGCATTCATAGCAGCCATAGTTGTGTGGACCATAGAGTATATAGAATATAGAAGAATAAGGAAACAAAAACAAATAGATAGGTTACTTGATAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGATGGGGACACAGAAGAATTATCCATGCTTGTGGAGGTGGGGGATTATAATCTTTTGGATAATGCTGATATGTAAGGGTGAAGATCTGTGGGTCACGGTCTATTATGGGGTACCTGTGTGGAGAGACGCAGATACCACCCTGTTTTGTGCATCAGATGCGAAATCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGATCCTAGCCCACAAGAAATATATTTGGAAAATGTAACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAAGATATAATTAGTCTATGGGACCAAAGCTTAAAACCATGTGTAGAGTTAACCCCTCTCTGCGTTACTTTAGAGTGTCATAGTGTCACCAACAGCAGTGAGAACAAAATTGGCAACATATCTATTGAAATGCAAGGGGAAATAAAAAACTGCTCTTTCAATATGACCACAGAACTACGAGACAAGAATCGGAAAATGCATGCACTTTTTTATAGACAAGATATAGTACCAATGAATGAAAGTTTAGTATCAATAAATACAACTAACAGCACTGATCAGTATAGGTTAATAAATTGTAATACCTCAACCGTTACACAGGCTTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCTGCTGGTTTTGCAATTCTGAAATGTAATGATAAGAATTTCAATGGAACAGGGCTATGCAGGAATGTCAGTACAGTACAATGCACACATGGAATCAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAAGAGAGGTAGTGATTAGATCTGAAAATTTCTCAGATAATGCCAAAACCATAATAGTACAGTTAGCTAAGCCTGTACAAATTAATTGTACCAGACCTAACAACAATACAAGAACAGGTATACATATGGGACTAGGGCGAACATTCTATGCAACAGGTGACATAATAGGGGATATAAGACAAGCACATTGTAATGTTAGTGCAAAAGCTTGGAATGATACTTTACAACAGGTGGCCACACAATTAGGGAAGCACTACGGTGGTAACACAACAATCATATTTACTAACCACTCAGGAGGGGATGTAGAAATTATGACACATACTTTTAATTGTGGAGGAGAATTTTTCTATTGCAATACATCAAGACTGTTTAATAGCAATTGGAAAAACGGTACTGCCAGCTCAAATGGCACTGCAAATGACATTATAACTCTCCAATGCAGAATAAGGCAAATTATAAATATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCCCAGGAGTAATAAGGTGTGAGTCAAACATTACAGGACTACTATTAACAAGAGATGGAGGGAAAAATACTAGTGGTGTAAATGAGACTTTCAGACCTGAAGGAGGAAATATGAAAGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAATAAAAATTGAACCACTAGGTGTAGCACCCACCCGTGCAAGAAGAAGAGTGGTGGGAAGAGAAAAAAGAGCAATAGGTGGACTGGGAGCTGCCCTCCTTGGGTTCCTAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAGCAATCTGCTGAGGGCTATAAAGGCTCAACAAGAACTGTTGAGACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCTGGAGGGATACCTAAGGGATCAGCAGCTCCTAGGAATTTGGGGATGCTCTGGAAGACTCATCTGCACCACTAATGTACCCTGGAACTCTACTTGGAGTAATAAAACTTATAATGACATATGGGGGAACATGACCTGGCTGGAATGGGATAGAGAAATTAGCAATTACACAGACATAATATATAATCTAATTGAAGTATCGCAAAACCAGCAGGAAAAGAATGAACAAGACTTATTGGCATTGGACAAGTGGGCAAGTCTGTGGAGTTGGTTTAGCATAACAAATTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTGCTGTACTTACTATAATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCTTACCCACCACCAGAGGGATCCAGGCAGACCAGAAAGAATCGAAGAAGAAGGTGGCGAGCAAGCCAGAGCCAGATCCGTGCGATTAGTGAGCGGCTTCTTAGCTCTTGCCTGGGACGACCTAAGGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGAGACTTACTCTTGATTCTGGGACACAGCAGCCTCAAGAGCCTGCAACTGGGGTGGGAAGCCCTCAAATATCTGTGGAATCTTCTAACATACTGGGGTCAGGAACTAAGGAATAGTGCTATTAGTTTGCTTGATACCATAGCAATAGCAGTAGCTAACTGGACAGACAGAGTCATAGAAATAGGACAAAGAATTGCTAGAGCTATTTGCAACATACCTAGAAGAATCAGACAGGGTCTTGAAAGGGCTTTGATATAACATGGGCAGCAAGCTTTCAAAAAGCCGCATAGTGGGATGGGCTAGGGTTAGGGAAAGACTAAGACGAACCCCTCCAACAGCAGAAAGAGTAAGACGACCCCCTCCAGCAGCAGAAGGGGCAGGAGCAACATCTCAAGCAGCAGTAGGAGTAGGAGCAGCATCTCAAGATTTAGCGAGACATGGAGCAATCACAAGCAGTAATACATCAAGTACTAATGCTGATTGTGCCTGGCTGGAAGCACAAGAGGAAGAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCACAGGTACCTTTGAGACCAATGACTTATAAGGCAGCTGTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCAAGAAAAGACAGGAGATCCTTGATCTGTGGGTCTATCACACACAAGGATTCCTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATACCCACTGACCTTTGGATGGTGCTTCAAACTAGTACCAATAGATCCAGCAGAGGTAGAGGAAGCCAATGAAGGAGAGAACAACGTCTTATTACACCCCATCTGCCAGCATGGAATGGATGATGAAGACAGAGAAGTACTGGTCTGGAAGTTTGACAGCCGCCTGGCATTCACACACACAGCAAGAGAGCTGCATCCGGAGTTTTACAAAGACTGTTGACACAGAAGTTGCTGACAGGGACTTTCTGCCTGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTGTGGGAGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGC'); - - -delete from sequenceanalysis.ref_aa_sequences WHERE ref_nt_id = (SELECT n.rowid FROM sequenceanalysis.ref_nt_sequences n where n.name ='GHNJ196'); ---ugly hack to work on SQLServer 2005. 2005 doesnt allow subselect on insert, so we insert using a placeholder, then update -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('813-2309', 813, 'MGARASVLSGGKLDAWEKIRLRPGGKKQYKLKHIVWASRELERFALNPGLLETAEGCQQLLEQLQSTLRTGSEELKSLYNTIATLWCVHQRIDIRDTKEALDKIEEAQNKSKQKTQQAAAATGSSNQVRVSSQNFPIVQNAQGQMIHQSMSPRTLNAWVKVIEEKGFSPEVIPMFSALSEGAAPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRVHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIVLGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLLVQNANPDCKTILRALGPGASLEEMMTACQGVGGPSHKARVLAEAMSQAQQSNVMMQRGNFRGQRTIKCFNCGKEGHLARNCKAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFPQSRPEPSAPPAESLGMGEEVASTPKQEPGDKGIYPPLTSLKSLFGNDP*', 'Gag', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('2111-5125', 2111, 'FFRENLAFQQGEARKFSSEQTGTISPTSRELGDGGRGSLNPEAGAGGQGNISSLNFPQITLWQRPLVTVRIGCQLIEALLDTGADDTVLEEKVELPGKWKPKMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGQISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRPQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLHEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTNNPEMVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQHIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVTLTEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKKRSAHTNDVKQLTEVVQKVATESIIIWGKTPKFRLPIQKETWEAWWMDYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSDSEIVNLIIEKLIEKDKVYLSWVPAHKGIGGNEQVDKLVSNGIRRVLFLDGIDKAQEEHERYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRVIHTDNGSNFTSAAVKAACWWADVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQMAGDDCVAGRQDED*', 'Pol', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5070-5648', 5070, 'MENRWQVMTVWQVDRMKIRTWNSLVKHHMYVSKKAKDWFYRHHFESRHPKASSEVHIPLGDARLVVRTYWGLNTGERDWHLGHGVSIEWRQRRYSTQIDPDLADQLIHLYYFDCFSESAIRKVLLGQVVRPSCEYQAGHSKVGSLQYLALKALVAPTRRKPPLPSVKKLTEDRWNKPQKTRGHRGNRPINGH*', 'Vif', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5588-5878', 5588, 'MEQAPEDQGPQREPSNQWTLELLEELKQEAVRHFPRPWLHGLGQYIYNTYGDTWEGVEAIIRILQQLLFVHFRIGCQHSRIGIIRGRRGRNGSGRS*', 'Vpr', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5859-6073;8426-8516', 5859, 'MDLVDPNLDPWNHPGSQPTTACSKCYCKICCWHCQLGFLNKGLGISYGRKKRRPRRGTPQNRQDYQNPAPKQPLPTTRGIQADQKESKKKVASKPEPDPCD*', 'Tat', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5998-6073;8426-8700', 5998, 'MAGRSGDPDEELLRTVRIIKILHQSNPYPPPEGSRQTRKNRRRRWRASQSQIRAISERLLSSCLGRPKEPVPLQLPPIERLTLDSGTQQPQEPATGVGSPQISVESSNILGSGTKE*', 'Rev', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6100-6345', 6100, 'MQSLVIAAIVGLVVAFIAAIVVWTIEYIEYRRIRKQKQIDRLLDRIRERAEDSGNESDGDTEELSMLVEVGDYNLLDNADM*', 'Vpu', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6263-8842', 6263, 'MRVMGTQKNYPCLWRWGIIIFWIMLICKGEDLWVTVYYGVPVWRDADTTLFCASDAKSYDTEVHNVWATHACVPTDPSPQEIYLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVELTPLCVTLECHSVTNSSENKIGNISIEMQGEIKNCSFNMTTELRDKNRKMHALFYRQDIVPMNESLVSINTTNSTDQYRLINCNTSTVTQACPKVSFEPIPIHYCAPAGFAILKCNDKNFNGTGLCRNVSTVQCTHGIKPVVSTQLLLNGSLAEREVVIRSENFSDNAKTIIVQLAKPVQINCTRPNNNTRTGIHMGLGRTFYATGDIIGDIRQAHCNVSAKAWNDTLQQVATQLGKHYGGNTTIIFTNHSGGDVEIMTHTFNCGGEFFYCNTSRLFNSNWKNGTASSNGTANDIITLQCRIRQIINMWQKVGKAMYAPPIPGVIRCESNITGLLLTRDGGKNTSGVNETFRPEGGNMKDNWRSELYKYKVIKIEPLGVAPTRARRRVVGREKRAIGGLGAALLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIKAQQELLRLTVWGIKQLQARVLALEGYLRDQQLLGIWGCSGRLICTTNVPWNSTWSNKTYNDIWGNMTWLEWDREISNYTDIIYNLIEVSQNQQEKNEQDLLALDKWASLWSWFSITNWLWYIKIFIMIVGGLIGLRIVFAVLTIINRVRQGYSPLSFQTLTHHQRDPGRPERIEEEGGEQARARSVRLVSGFLALAWDDLRSLCLFSYHRLRDLLLILGHSSLKSLQLGWEALKYLWNLLTYWGQELRNSAISLLDTIAIAVANWTDRVIEIGQRIARAICNIPRRIRQGLERALI*', 'Env', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('8844-9530', 8844, 'MGSKLSKSRIVGWARVRERLRRTPPTAERVRRPPPAAEGAGATSQAAVGVGAASQDLARHGAITSSNTSSTNADCAWLEAQEEEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSKKRQEILDLWVYHTQGFLPDWQNYTPGPGIRYPLTFGWCFKLVPIDPAEVEEANEGENNVLLHPICQHGMDDEDREVLVWKFDSRLAFTHTARELHPEFYKDC*', 'Nef', -1); ---see above -UPDATE sequenceanalysis.ref_aa_sequences SET ref_nt_id = (SELECT n.rowid FROM sequenceanalysis.ref_nt_sequences n where n.name ='GHNJ196') WHERE ref_nt_id = -1; - - -delete from sequenceanalysis.virus_strains where virus_strain ='NC_001722'; -insert into sequenceanalysis.virus_strains (virus_strain,genbank,species) values ('NC_001722', 'NC_001722', 'HIV'); - -delete from sequenceanalysis.ref_nt_sequences where name ='NC_001722'; -insert into sequenceanalysis.ref_nt_sequences (name,category,subset,mol_type,species,genbank,sequence) values -('NC_001722', 'Virus', 'NC_001722', 'RNA', 'HIV', 'NC_001722', 'TGCAAGGGATGTTTTACAGTAGGAGGAGACATAGAATCCTAGACATATACCTAGAAAAAGAGGAAGGGATAATACCAGATTGGCAGAATTATACTCATGGGCCAGGAGTAAGGTACCCAATGTACTTCGGGTGGCTGTGGAAGCTAGTATCAGTAGAACTCTCACAAGAGGCAGAGGAAGATGAGGCCAACTGCTTAGTACACCCAGCACAAACAAGCAGACATGATGATGAGCATGGGGAGACATTAGTGTGGCAGTTTGACTCCATGCTGGCCTATAACTACAAGGCCTTCACTCTGTACCCAGAAGAGTTTGGGCACAAGTCAGGATTGCCAGAGAAAGAATGGAAGGCAAAACTGAAAGCAAGAGGGATACCATATAGTGAATAACAGGAACAACCATACTTGGTCAAGGCAGGAAGTAGCTACTAAGAAACAGCTGAGGCTGCAGGGACTTTCCAGAAGGGGCTGTAACCAAGGGAGGGACATGGGAGGAGCTGGTGGGGAACGCCCTCATACTTACTGTATAAATGTACCCGCTTCTTGCATTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATCGAGCCCTGAGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTGGACTCTCACCAGTACTTGGCCGGTACTGGGCAGACGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCAGTTAGAAGCAAGTTAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATTCGGTGTTCATCTGAGTAACAAGACCCTGGTCTGTTAGGACCCTTCTCGCTTTGGGAATCCAAGGCAGGAAAATCCCTAGCAGGTTGGCGCCCGAACAGGGACTTGAAGAGGACTGAGAAGCCCTGGAACTCGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACAAACCACGACGGAGTGCTCCTAGAAAGGCGCGGGCCGAGGTACCAAAGGCGGCGTGTGGAGCGGGAGTGAAAGAGGCCTCCGGGTGAAGGTAAGTACCTACACCAAAAACTGTAGCCAGAAAAGGCTTGTTATCCTACCTTTAGACAGGTAGAAGATTGTGGGAGATGGGCGCGAGAAACTCCGTCTTGAGAGGGAAAAAAGCAGACGAATTAGAAAAAGTTAGGTTACGGCCCGGCGGAAAGAAAAAGTACAGGTTAAAACATATTGTGTGGGCAGCGAATGAATTGGATAAATTCGGATTGGCAGAGAGCCTGTTGGAGTCAAAAGAAGGTTGCCAAAAGATTCTCAGAGTTTTAGATCCATTAGTACCAACAGGGTCAGAAAATTTAAAAAGCCTTTTTAATACCGTCTGCGTCATTTGGTGCTTGCACGCAGAAGAGAAAGTGAAAGATACTGAGGAAGCAAAGAAACTAGCACAGAGACATCTAGTGGCAGAAACTGGAACTGCAGAGAAAATGCCAAATACAAGTAGACCAACAGCACCACCTAGTGGGAAAAGAGGAAACTACCCCGTGCAACAAGCGGGTGGCAACTATGTCCATGTGCCACTGAGCCCCCGAACTCTAAATGCATGGGTAAAATTAGTGGAGGAAAAGAAGTTCGGGGCAGAAGTAGTGCCAGGATTTCAGGCACTCTCAGAAGGCTGCACGCCCTATGATATTAATCAAATGCTTAATTGTGTGGGCGATCACCAAGCAGCTATGCAAATAATCAGAGAGATTATTAATGAAGAAGCAGCAGACTGGGATTCGCAGCACCCAATACCAGGCCCCTTACCAGCAGGACAGCTCAGAGACCCAAGAGGGTCTGACATAGCAGGAACAACAAGCACAGTAGATGAACAGATCCAGTGGATGTATAGGCCACAAAATCCCGTACCGGTAGGGAACATCTACAGAAGATGGATCCAAATAGGGCTGCAAAAGTGTGTCAGAAAGTACAACCCAACTAACATCTTAGACATAAAACAGGGACCAAAAGAACCGTTCCAAAGCTATGTAGACAGGTTCTACAAAAGCTTGAGGGCAGAACAAACAGACCCAGCAGTAAAAAATTGGATGACCCAAACGCTGCTAATACAGAATGCCAACCCAGACTGCAAGTTAGTACTAAAAGGACTGGGGATGAATCCCACCCTAGAAGAGATGCTAACCGCCTGCCAGGGGGTAGGCGGACCAGGCCAGAAAGCCAGGCTAATGGCTGAAGCCCTAAAAGAGGCTATGGGACCAAGCCCTATCCCATTTGCAGCAGCCCAACAAAGAAAGGCAATTAGGTATTGGAACTGTGGAAAGGAGGGACACTCGGCAAGACAGTGCCGAGCACCTAGAAGACAGGGCTGCTGGAAGTGTGGCAAGCCAGGACACATCATGGCAAACTGCCCGGAAAGACAGGCAGGTTTTTTAGGGTTGGGCCCACGGGGAAAGAAGCCTCGCAACTTCCCCGTGACCCAAGCCCCTCAGGGGCTGATACCAACAGCACCTCCGGCAGATCCAGCAGCGGAACTGTTGGAGAGATATATGCAGCAAGGGAGAAAGCAGAGGGAGCAGAGGGAGAGACCATACAAAGAGGTGACGGAGGACTTGCTGCACCTCGAGCAGAGAGAGACACCTCACAGAGAGGAGACAGAGGACTTGCTGCACCTCAATTCTCTCTTTGGAAAAGACCAGTAGTCACAGCGTACATCGAGGATCAGCCGGTAGAAGTCTTACTAGACACAGGGGCTGATGACTCAATAGTAGCAGGAATAGAATTAGGGGACAATTACACTCCAAAAATAGTAGGGGGAATAGGGGGATTTATAAACACCAAAGAATACAAAAATGTAGAAATAAAAGTACTAAATAAAAGAGTAAGAGCCACCATAATGACAGGAGATACCCCAATCAACATCTTTGGCAGAAATATTCTGACAGCCTTAGGCATGTCATTAAATTTACCAGTTGCCAAGATAGAGCCAATAAAAGTAACATTGAAGCCAGGGAAAGATGGACCAAGGCTGAAACAATGGCCCCTAACAAAAGAGAAAATAGAAGCACTAAAAGAGATCTGTGAAAAAATGGAAAAAGAGGGCCAGCTAGAAGAGGCACCTCCAACTAATCCTTATAATACCCCCACATTTGCAATTAAGAAAAAGGACAAGAACAAATGGAGGATGCTGATAGATTTTAGAGAACTAAATAAGGTGACTCAAGATTTCACAGAAATTCAGCTAGGAATTCCACACCCGGCAGGACTAGCCAAAAAGAAAAGGATCTCTATATTAGATGTAGGGGATGCCTATTTTTCCATACCACTACATGAAGATTTTAGGCAGTATACTGCATTTACCCTACCAGCAGTAAACAATATGGAACCAGGAAAAAGATATATATATAAAGTCTTGCCACAAGGATGGAAGGGATCACCAGCAATTTTTCAATACACAATGAGGCAAGTCTTAGAACCTTTCAGAAAAGCAAACCCAGATGTCATTCTCATCCAGTACATGGATGATATCTTAATAGCTAGTGACAGGACAGGTTTAGAGCATGACAAAGTGGTCCTGCAGCTAAAAGAACTTCTAAATGGCCTAGGGTTTTCTACTCCAGATGAGAAGTTCCAAAAAGACCCTCCATTTCAATGGATGGGCTGTGAACTATGGCCAACTAAATGGAAGCTGCAGAAACTACAACTGCCCCAGAAAGACATATGGACAGTCAATGACATCCAAAAGCTAGTGGGAGTCTTAAATTGGGCGGCACAAATCTATTCAGGAATAAAAACCAAACACTTATGTAGACTAATTAGAGGAAAAATGACACTCACAGAAGAAGTGCAGTGGACAGAACTAGCAGAAGCAGAGCTAGAAGAAAACAAAATTATCTTGAGCCAGGAACAAGAAGGATATTATTACCAAGAAGAAAAAGAATTAGAGGCAACAATCCAAAAAAGCCAAGGACATCAATGGACATACAAAATACACCAGGAAGAGAAAATCCTAAAAGTAGGAAAGTATGCAAAGATAAAAAATACCCATACCAATGGGGTCAGATTACTAGCACAGGTAGTTCAGAAAATAGGAAAAGAGGCACTAGTCATTTGGGGACGGATACCAAAATTTCACCTGCCAGTGGAGAGAGAGACCTGGGAGCAGTGGTGGGATAACTACTGGCAAGTGACATGGATCCCAGAGTGGGACTTTGTATCTACCCCACCACTGGTCAGGTTAACATTTAACCTAGTAGGAGATCCTATACCAGGCGCAGAGACCTTCTACACAGATGGATCATGCAATAGACAGTCAAAAGAGGGAAAAGCAGGATATGTAACAGATAGAGGAAAAGACAAAGTAAAAGTATTAGAACAAACTACCAATCAGCAGGCAGAATTAGAAGTCTTTCGGATGGCACTGGCAGACTCAGGCCCAAAGGTTAATATCATAGTAGATTCACAGTATGTAATGGGGATAGTAGCAGGCCAGCCAACAGAGTCAGAAAATAGAATAGTGAACCAGATCATAGAAGAAATGATAAAGAAGGAAGCAGTCTATGTTGCATGGGTCCCAGCCCATAAAGGCATAGGAGGAAACCAGGAAGTAGACCATTTAGTAAGTCAAGGCATCAGACAAGTATTATTCCTGGAAAAGATAGAGCCCGCTCAAGAGGAACATGAAAAATATCATAGCATTATAAAAGAACTAACCCATAAATTTGGAATACCCCTTCTAGTAGCAAGACAGATAGTAAACTCATGTGCCCAATGCCAACAGAAAGGAGAAGCCATACATGGGCAAGTAAATGCAGAAATAGGCGTTTGGCAAATGGACTACACACACTTAGAAGGAAAAATCATTATAGTAGCAGTACATGTTGCAAGTGGATTCATAGAAGCAGAAGTCATCCCACAGGAATCAGGAAGGCAGACAGCACTCTTCCTATTAAAACTGGCCAGTAGGTGGCCAATAACGCACTTGCACACAGACAATGGCCCCAACTTCACTTCACAGGAAGTGAAGATGGTGGCATGGTGGGTAGGTATAGAACAATCCTTTGGAGTACCTTACAACCCACAAAGCCAGGGAGTAGTAGAAGCAATGAATCACCACCTAAAGAATCAGATAAGTAGAATTAGAGAACAGGCAAATACAATAGAAACAATAGTACTGATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACCCCAGCAGAAAGACTAATCAACATGATTACCACAGAACAAGAAATACAATTCCTCCAAAGAAAAAATTCAAATTTTAAAAATTTCCAGGTCTATTACAGAGAAGGCAGAGATCAGCTGTGGAAAGGACCTGGTGAACTACTGTGGAAGGGAGAAGGAGCAGTCATAGTCAAGGTAGGGACAGACATAAAAGTAGTACCAAGAAGGAAGGCCAAGATTATCAGGGACTATGGAGGAAGACAGGAACTGGATAGTAGTCCCCACCTGGAGGGTGCCAGGGAGGATGGAGAAATGGCATGCCCTTGTCAAGTACCTGAAATACAGAACAAAAGACCTAGAGGAGGTGCGCTATGTTCCCCACCACAAGGTGGGATGGGCATGGTGGACTTGCAGCAGGGTAATATTCCCACTACAAGGAAAAAGTCATCTAGAAATACAGGCATATTGGAACCTAACACCAGAAAAAGGATGGCTCTCCTCTCATGCAGTAAGATTAACCTGGTATACAGAAAAGTTCTGGACAGATGTTACCCCAGACTGTGCAGACATCCTAATACATAGCACTTATTTCTCTTGCTTTACGGCAGGTGAAGTAAGAAGAGCCATCAGAGGGGAAAAGTTATTGTCCTGCTGCAACTATCCCCAAGCTCATAAAGCACAGGTACCATCACTTCAATACCTAGCCCTAGTAGTAGTACAACAAAATGACAGACCCCAGAGAAAGGGTACCGCCAGGAAACAGTGGAGAAGAGACCATTGGAGAGGCCTTCGAGTGGCTAGAGAGGACCATAGAAGCCTTAAACAGGGAGGCAGTGAACCATCTGCCCCGAGAGCTCATTTTCCAGGTGTGGCAAAGGTCCTGGAGATATTGGCATGATGAACAAGGGATGTCAGCAAGCTACACAAAGTATAGATATTTGTGCCTAATGCAAAAAGCTATATTTACACATTTCAAGAGAGGGTGCACTTGCTGGGGGGAGGACATGGGCCGGGAAGGATTGGAAGACCAAGGACCTCCCCCTCCTCCCCCTCCAGGTCTAGTCTAATGACTGAAGCACCAACAGAGTTTCCCCCAGAAGATGGGACCCCACGGAGGGACTTAGGGAGTGACTGGGTAATAGAAACTCTGAGGGAAATAAAGGAAGAAGCCTTAAGACATTTTGATCCCCGCTTGCTAATTGCTCTTGGCTACTATATCCATAATAGACATGGAGACACCCTTGAAGGCGCCAGAGAGCTCATTAAAACCCTACAACGAGCCCTCTTCGTGCACTTCAGAGCGGGATGTAACCGCTCAAGAATTGGCTAAACAAGGAGAAGAACTCCTTGCCCAGCTGCACCGACCCCTAGAGCCATGCACTAACAAATGCTATTGTAAGCGATGCAGTTTCCATTGCCAGCTGTGTTTCTCGAAAAAGGGGCTCGGAATATCATATGAGCGAAAGGGCAGACGAAGAAGGACTCCAAGGAAAACTAAGACTCCTTCGCCTTCTGCACCAGACAAGTGAGTATGGAGCCTGGTAGGAATCAGCTGTTTGTTGTCATTTTACTAACAAGTGCTTGCTTAGTATATTGTAGCCAGTATGTGACTGTTTTCTATGGCATACCCGCGTGGAAAAATGCATCTATTCCCTTATTTTGTGCAACTAAAAATAGAGACACTTGGGGGACCATACAGTGCTTGCCAGACAATGATGATTATCAGGAAATAATTTTAAATGTGACAGAGGCTTTTGATGCATGGAATAATACAGTGACAGAACAAGCAGTAGAAGATGTCTGGCATCTATTTGAGACATCAATAAAACCATGTGTCAAGCTAACACCTCTATGTGTGGCAATGAATTGTAGCAGGGTTCAAGGGAATACCACGACCCCGAATCCCAGGACCTCGAGTTCCACAACCTCGAGACCACCCACATCCGCAGCCTCCATAATAAATGAAACTTCTAACTGCATAGAAAACAACACATGCGCAGGATTAGGGTATGAGGAGATGATGCAATGTGAGTTCAATATGAAGGGGTTAGAACAAGATAAGAAAAGGAGGTATAAGGACACATGGTATTTAGAAGATGTGGTTTGTGACAACACAACAGCTGGCACATGTTACATGAGACATTGCAACACATCAATCATCAAAGAGTCATGTGATAAGCACTATTGGGATGCTATGAGGTTTAGATACTGTGCACCACCGGGCTTTGCCCTATTAAGATGTAATGATACCAACTATTCAGGCTTTGAACCTAAGTGCACTAAAGTAGTAGCTGCTTCATGCACAAGGATGATGGAAACGCAAACTTCTACTTGGTTTGGCTTTAATGGCACTAGAGCAGAAAATAGAACATATATCTATTGGCATGGCAGAGATAATAGGACTATCATTAGCTTAAACAAGTATTATAATCTCACAATGCGTTGTAAGAGACCAGGAAATAAGACAGTTTTACCAATAACACTTATGTCAGGATTAGTGTTTCACTCTCAGCCAATCAACACAAGGCCTAGGCAGGCATGGTGCCGGTTTGGAGGCAGATGGAGGGAAGCCATGCAGGAGGTGAAGCAAACCCTTGTACAACATCCCAGATACAAAGGAATCAATGATACAGGGAAAATTAACTTTACGAAACCGGGAGCAGGCTCAGACCCGGAAGTGGCATTTATGTGGACTAACTGCAGAGGAGAATTTCTCTACTGTAACATGACTTGGTTCCTCAATTGGGTAGAAGACAAGAACCAAACACGGCGCAACTATTGCCATATAAAGCAGATAATTAATACCTGGCATAAAGTAGGGAAAAATGTATATTTGCCTCCTAGGGAAGGGGAGTTGGCCTGTGAATCAACAGTAACCAGCATAATTGCTAACATTGACATAGATAAAAATCGGACTCATACCAACATTACCTTTAGTGCAGAAGTGGCAGAACTGTACCGATTAGAACTGGGAGACTACAAATTAATAGAAATAACACCAATTGGCTTCGCACCTACAGATCAGAGAAGGTACTCCTCAACTCCAGTGAGGAACAAAAGAGGTGTGTTCGTGCTAGGGTTCTTGGGTTTTCTCGCGACAGCAGGTTCTGCAATGGGCGCGCGGTCCCTGACGCTGTCAGCCCAGTCCCGGACTTTACTGGCCGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTAGTCAAGAGACAACAAGAAATGTTGCGACTGACCGTCTGGGGAACGAAAAACCTCCAGGCAAGAGTCACTGCTATCGAGAAGTACCTAAAGCATCAGGCACAGCTAAATTCATGGGGATGTGCGTTTAGACAGGTCTGCCACACTACTGTACCGTGGGTAAATGACTCTTTATCGCCTGACTGGAAAAATATGACATGGCAGGAGTGGGAGAAACAAGTCCGCTACCTAGAGGCAAATATCAGTCAAAGTTTAGAAGAAGCCCAAATTCAACAAGAAAAGAATATGTATGAATTACAAAAATTAAATAGCTGGGATATTCTTGGCAACTGGTTTGACTTAACCTCCTGGGTCAAGTATATTCAATATGGAGTGCATATAGTAGTGGGAATAATAGCTTTAAGAATAGCAATCTATGTAGTGCAATTGTTAAGTAGATTTAGAAAGGGCTATAGGCCTGTTTTCTCTTCCCCCCCCGGTTATCTCCAACAGATCCATATCCACAAGGACCGGGGACAGCCAGCCAACGAAGGAACAGAAGAAGACGTCGGAGGCGACAGTGGTTACGACTTGTGGCCTTGGCCAATAAACTATGTGCAGTTCCTGATCCACCTACTGACTCGCCTCTTGATCGGGCTATACAACATCTGCAGAGACTTACTATCCAAGAACTCCCCGACCCGCCGACTGATCTCCCAGAGTCTAACAGCAATCAGGGACTGGCTGAGACTTAAGGCGGCCCAACTGCAATATGGGTGCGAGTGGATCCAAGAAGCTTTCCAAGCATTCGCGAGGACTACGAGAGAGACTCTTGCGGGCGCGTGGGGATGGTTATGGGAAGCAGCGCGACGCATCGGGAGGGGAATACTCGCAGTTCCAAGAAGAATCAGGCAGGGAGCAGAACTCGCCCTCCTGTGAGGGACAGCAGTATCAGCAGGGAGAGTACATGAACAGCCCATGGAGAAACCCAGCAACAGAAAGACAGAAAGATTTGTATAGGCAGCAAAATATGGATGATGTAGATTCTGATGATGATGACCTAATAGGAGTTCCTGTTACACCAAGAGTACCACGGAGAGAAATGACCTATAAATTGGCAATAGATATGTCACATTTTATAAAAGAAAAAGGGGGACTGCAAGGGATGTTTTACAGTAGGAGGAGACATAGAATCCTAGACATATACCTAGAAAAAGAGGAAGGGATAATACCAGATTGGCAGAATTATACTCATGGGCCAGGAGTAAGGTACCCAATGTACTTCGGGTGGCTGTGGAAGCTAGTATCAGTAGAACTCTCACAAGAGGCAGAGGAAGATGAGGCCAACTGCTTAGTACACCCAGCACAAACAAGCAGACATGATGATGAGCATGGGGAGACATTAGTGTGGCAGTTTGACTCCATGCTGGCCTATAACTACAAGGCCTTCACTCTGTACCCAGAAGAGTTTGGGCACAAGTCAGGATTGCCAGAGAAAGAATGGAAGGCAAAACTGAAAGCAAGAGGGATACCATATAGTGAATAACAGGAACAACCATACTTGGTCAAGGCAGGAAGTAGCTACTAAGAAACAGCTGAGGCTGCAGGGACTTTCCAGAAGGGGCTGTAACCAAGGGAGGGACATGGGAGGAGCTGGTGGGGAACGCCCTCATACTTACTGTATAAATGTACCCGCTTCTTGCATTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATCGAGCCCTGAGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTGGACTCTCACCAGTACTTGGCCGGTACTGGGCAGACGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCAGTTAGAAGCAAGTTAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATTCGGTGTTCATCTGAGTAACAAGACCCTGGTCTGTTAGGACCCTTCTCGCTTTGGGAATCCAAGGCAGGAAAATCCCTAGCA'); - -delete from sequenceanalysis.ref_aa_sequences where ref_nt_id = (select n.rowid from sequenceanalysis.ref_nt_sequences n where name = 'NC_001722'); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('1103-2398;2398-5754', 1103, 'MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKDTEEAKKLAQRHLVAETGTAEKMPNTSRPTAPPSGKRGNYPVQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDSQHPIPGPLPAGQLRDPRGSDIAGTTSTVDEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILDIKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCPERQAGFFRVGPTGKEASQLPRDPSPSGADTNSTSGRSSSGTVGEIYAAREKAEGAEGETIQRGDGGLAAPRAERDTSQRGDRGLAAPQFSLWKRPVVTAYIEDQPVEVLLDTGADDSIVAGIELGDNYTPKIVGGIGGFINTKEYKNVEIKVLNKRVRATIMTGDTPINIFGRNILTALGMSLNLPVAKIEPIKVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKKRISILDVGDAYFSIPLHEDFRQYTAFTLPAVNNMEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVILIQYMDDILIASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPFQWMGCELWPTKWKLQKLQLPQKDIWTVNDIQKLVGVLNWAAQIYSGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEENKIILSQEQEGYYYQEEKELEATIQKSQGHQWTYKIHQEEKILKVGKYAKIKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERETWEQWWDNYWQVTWIPEWDFVSTPPLVRLTFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFRMALADSGPKVNIIVDSQYVMGIVAGQPTESENRIVNQIIEEMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSIIKELTHKFGIPLLVARQIVNSCAQCQQKGEAIHGQVNAEIGVWQMDYTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPNFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGELLWKGEGAVIVKVGTDIKVVPRRKAKIIRDYGGRQELDSSPHLEGAREDGEMACPCQVPEIQNKRPRGGALCSPPQGGMGMVDLQQGNIPTTRKKSSRNTGILEPNTRKRMALLSCSKINLVYRKVLDRCYPRLCRHPNT*', 'gag-pol fusion polyprotein', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('1103-2668', 1103, 'MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKDTEEAKKLAQRHLVAETGTAEKMPNTSRPTAPPSGKRGNYPVQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDSQHPIPGPLPAGQLRDPRGSDIAGTTSTVDEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILDIKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCPERQAGFLGLGPRGKKPRNFPVTQAPQGLIPTAPPADPAAELLERYMQQGRKQREQRERPYKEVTEDLLHLEQRETPHREETEDLLHLNSLFGKDQ*', 'gag polyprotein', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5423-6070', 5423, 'MEEDRNWIVVPTWRVPGRMEKWHALVKYLKYRTKDLEEVRYVPHHKVGWAWWTCSRVIFPLQGKSHLEIQAYWNLTPEKGWLSSHAVRLTWYTEKFWTDVTPDCADILIHSTYFSCFTAGEVRRAIRGEKLLSCCNYPQAHKAQVPSLQYLALVVVQQNDRPQRKGTARKQWRRDHWRGLRVAREDHRSLKQGGSEPSAPRAHFPGVAKVLEILA*', 'Vif', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5898-6239', 5898, 'MTDPRERVPPGNSGEETIGEAFEWLERTIEALNREAVNHLPRELIFQVWQRSWRYWHDEQGMSASYTKYRYLCLMQKAIFTHFKRGCTCWGEDMGREGLEDQGPPPPPPPGLV*', 'Vpx', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6239-6502', 6239, 'MTEAPTEFPPEDGTPRRDLGSDWVIETLREIKEEALRHFDPRLLIALGYYIHNRHGDTLEGARELIKTLQRALFVHFRAGCNRSRIG*', 'Vpr', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6402-6697;8861-8957', 6402, 'METPLKAPESSLKPYNEPSSCTSERDVTAQELAKQGEELLAQLHRPLEPCTNKCYCKRCSFHCQLCFSKKGLGISYERKGRRRRTPRKTKTPSPSAPDKSISTRTGDSQPTKEQKKTSEATVVTTCGLGQ*', 'Tat', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6628-6697;8861-9102', 6628, 'MSERADEEGLQGKLRLLRLLHQTNPYPQGPGTASQRRNRRRRRRRQWLRLVALANKLCAVPDPPTDSPLDRAIQHLQRLTIQELPDPPTDLPESNSNQGLAET*', 'Rev', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6704-9286', 6704, 'MEPGRNQLFVVILLTSACLVYCSQYVTVFYGIPAWKNASIPLFCATKNRDTWGTIQCLPDNDDYQEIILNVTEAFDAWNNTVTEQAVEDVWHLFETSIKPCVKLTPLCVAMNCSRVQGNTTTPNPRTSSSTTSRPPTSAASIINETSNCIENNTCAGLGYEEMMQCEFNMKGLEQDKKRRYKDTWYLEDVVCDNTTAGTCYMRHCNTSIIKESCDKHYWDAMRFRYCAPPGFALLRCNDTNYSGFEPKCTKVVAASCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMRCKRPGNKTVLPITLMSGLVFHSQPINTRPRQAWCRFGGRWREAMQEVKQTLVQHPRYKGINDTGKINFTKPGAGSDPEVAFMWTNCRGEFLYCNMTWFLNWVEDKNQTRRNYCHIKQIINTWHKVGKNVYLPPREGELACESTVTSIIANIDIDKNRTHTNITFSAEVAELYRLELGDYKLIEITPIGFAPTDQRRYSSTPVRNKRGVFVLGFLGFLATAGSAMGARSLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQARVTAIEKYLKHQAQLNSWGCAFRQVCHTTVPWVNDSLSPDWKNMTWQEWEKQVRYLEANISQSLEEAQIQQEKNMYELQKLNSWDILGNWFDLTSWVKYIQYGVHIVVGIIALRIAIYVVQLLSRFRKGYRPVFSSPPGYLQQIHIHKDRGQPANEGTEEDVGGDSGYDLWPWPINYVQFLIHLLTRLLIGLYNICRDLLSKNSPTRRLISQSLTAIRDWLRLKAAQLQYGCEWIQEAFQAFARTTRETLAGAWGWLWEAARRIGRGILAVPRRIRQGAELALL*', 'Env', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('9120-9893', 9120, 'MGASGSKKLSKHSRGLRERLLRARGDGYGKQRDASGGEYSQFQEESGREQNSPSCEGQQYQQGEYMNSPWRNPATERQKDLYRQQNMDDVDSDDDDLIGVPVTPRVPRREMTYKLAIDMSHFIKEKGGLQGMFYSRRRHRILDIYLEKEEGIIPDWQNYTHGPGVRYPMYFGWLWKLVSVELSQEAEEDEANCLVHPAQTSRHDDEHGETLVWQFDSMLAYNYKAFTLYPEEFGHKSGLPEKEWKAKLKARGIPYSE*', 'Nef', -1); - -UPDATE sequenceanalysis.ref_aa_sequences SET ref_nt_id = (SELECT n.rowid FROM sequenceanalysis.ref_nt_sequences n where n.name ='NC_001722') WHERE ref_nt_id = -1; - -/* SequenceAnalysis-12.12-12.13.sql */ - -ALTER table sequenceanalysis.quality_metrics - add readset integer; - - ---delete orphan rows in non-existant containers. the container listener should handle future cases -DELETE from sequenceanalysis.sequence_readsets WHERE (select entityid from core.containers c where c.entityid = container) is null; -DELETE from sequenceanalysis.sequence_analyses WHERE (select entityid from core.containers c where c.entityid = container) is null; - ---then cleanup orphans lacking an analysis row -DELETE from sequenceanalysis.aa_snps WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; -DELETE from sequenceanalysis.nt_snps WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; -DELETE from sequenceanalysis.sequence_coverage WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; -DELETE from sequenceanalysis.sequence_reads WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; -DELETE from sequenceanalysis.sequence_alignments WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; - ---update virus genbank IDs -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'AB231898' WHERE name = 'GHNJ196'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'NC_001802' WHERE name = 'HXB2'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'NC_001722' WHERE name = 'NC_001722'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SHIV-1157ipd3N4' WHERE name = 'DQ779174'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SHIV89.6P' WHERE name = 'U89134'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVmac239' WHERE name = 'M33262'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVmac251' WHERE name = 'M19499'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVsmE543' WHERE name = 'U72748.2'; - -INSERT INTO sequenceanalysis.sequence_platforms (platform) VALUES ('MIXED'); - ---delete duplicate epitopes accidentally entered -update sequenceanalysis.ref_aa_features set comment = null where cast(comment as varchar(1000)) = ''; - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - ---also catch duplicates where the second one has a comment, but the first is blank -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)) - having count(*) > 1 -) and comment is null; - -/* SequenceAnalysis-12.13-12.14.sql */ - -alter table sequenceanalysis.sequence_readsets drop column qc_file; -alter table sequenceanalysis.sequence_readsets drop column qc_file2; - -alter table sequenceanalysis.sequence_analyses drop column qc_file; - -drop table sequenceanalysis.virus_strains; -drop table sequenceanalysis.samples; - -create table sequenceanalysis.illumina_templates ( - name varchar(100) not null, - json varchar(4000), - editable bit default 1, - - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - constraint PK_illumina_templates PRIMARY KEY (name) -); - -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Default', '{' + - 'Header: [["Template",""],["IEMFileVersion","3"],["Assay",""],["Chemistry","Default"]],' + - 'Reads: [["151",""], ["151",""]]' + - '}', 0 -); - -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Resequencing', '{' + - 'Header: [["Template","Resequencing"],["IEMFileVersion","3"],["Assay","TruSeq DNA/RNA"],["Chemistry","Default"]],' + - 'Reads: [["151",""], ["151",""]],' + - 'Settings: [["OnlyGenerateFASTQ","1"]]' + - '}', 1 -); - -/* SequenceAnalysis-12.14-12.15.sql */ - ---reinsert, using more strict json -delete from sequenceanalysis.illumina_templates; - -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Default', '{' + - '"Header": [["Template",""],["IEMFileVersion","3"],["Assay",""],["Chemistry","Default"]],' + - '"Reads": [["151",""], ["151",""]]' + - '}', 0 -); - -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Resequencing', '{' + - '"Header": [["Template","Resequencing"],["IEMFileVersion","3"],["Assay","TruSeq DNA/RNA"],["Chemistry","Default"]],' + - '"Reads": [["151",""], ["151",""]],' + - '"Settings": [["OnlyGenerateFASTQ","1"]]' + - '}', 1 -); - -/* SequenceAnalysis-12.15-12.16.sql */ - -DROP TABLE sequenceanalysis.module_properties; - -ALTER TABLE sequenceanalysis.aa_snps - ADD CONSTRAINT fk_aa_snps_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.quality_metrics - ADD CONSTRAINT fk_quality_metrics_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.nt_snps - ADD CONSTRAINT fk_nt_snps_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_alignments - ADD CONSTRAINT fk_sequence_alignments_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_analyses - ADD CONSTRAINT fk_sequence_analyses_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_coverage - ADD CONSTRAINT fk_sequence_coverage_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_reads - ADD CONSTRAINT fk_sequence_reads_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_readsets - ADD CONSTRAINT fk_sequence_readsets_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -/* SequenceAnalysis-12.16-12.17.sql */ - ---delete any orphan AA records -DELETE FROM sequenceanalysis.ref_aa_sequences WHERE ref_nt_id NOT IN (select rowid from sequenceanalysis.ref_nt_sequences); - -ALTER TABLE sequenceanalysis.quality_metrics - ADD CONSTRAINT fk_quality_metrics_metricname FOREIGN KEY (metricname) - REFERENCES sequenceanalysis.quality_metrics_types (type) - ON UPDATE CASCADE; - -ALTER TABLE sequenceanalysis.aa_snps - ADD CONSTRAINT fk_aa_snps_nt_snp FOREIGN KEY (nt_snp_id) - REFERENCES sequenceanalysis.nt_snps (rowid); - -ALTER TABLE sequenceanalysis.nt_snps - ADD CONSTRAINT fk_nt_snps_alignment FOREIGN KEY (alignment_id) - REFERENCES sequenceanalysis.sequence_alignments (rowid); - -ALTER TABLE sequenceanalysis.ref_aa_features - ADD CONSTRAINT fk_ref_aa_features_ref_aa FOREIGN KEY (ref_aa_id) - REFERENCES sequenceanalysis.ref_aa_sequences (rowid); - -ALTER TABLE sequenceanalysis.drug_resistance - ADD CONSTRAINT fk_drug_resistance_ref_aa FOREIGN KEY (ref_aa_id) - REFERENCES sequenceanalysis.ref_aa_sequences (rowid); - -ALTER TABLE sequenceanalysis.ref_aa_sequences - ADD CONSTRAINT fk_ref_aa_sequences_ref_nt FOREIGN KEY (ref_nt_id) - REFERENCES sequenceanalysis.ref_nt_sequences (rowid); - -ALTER TABLE sequenceanalysis.ref_nt_features - ADD CONSTRAINT fk_ref_nt_features_ref_nt FOREIGN KEY (ref_nt_id) - REFERENCES sequenceanalysis.ref_nt_sequences (rowid); - -ALTER TABLE sequenceanalysis.sequence_alignments - ADD CONSTRAINT fk_sequence_alignments_ref_nt FOREIGN KEY (ref_nt_id) - REFERENCES sequenceanalysis.ref_nt_sequences (rowid); - -ALTER TABLE sequenceanalysis.sequence_alignments - ADD CONSTRAINT fk_sequence_alignments_analysis FOREIGN KEY (analysis_id) - REFERENCES sequenceanalysis.sequence_analyses (rowid); - -ALTER TABLE sequenceanalysis.sequence_coverage - ADD CONSTRAINT fk_sequence_coverage_ref_nt FOREIGN KEY (ref_nt_id) - REFERENCES sequenceanalysis.ref_nt_sequences (rowid); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.11-12.12.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.11-12.12.sql deleted file mode 100644 index 1fbf8a812..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.11-12.12.sql +++ /dev/null @@ -1,95 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - - ---new drug resistance mutation. delete previous in case -DELETE from sequenceanalysis.drug_resistance WHERE -ref_nt_id = 5 AND -ref_aa_id = 105 and -class = 'NRTI' AND -aa_position = 138 -; - -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES -(5, 105, 'NRTI', 138, 0, 'E', 'K', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES -(5, 105, 'NRTI', 138, 0, 'E', 'K', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES -(5, 105, 'NRTI', 138, 0, 'E', 'K', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES -(5, 105, 'NRTI', 138, 0, 'E', 'K', 'RPV'); - ---insert new ref strains -delete from sequenceanalysis.virus_strains where virus_strain ='GHNJ196'; -insert into sequenceanalysis.virus_strains (virus_strain,genbank,species) values ('GHNJ196', 'AB231898', 'HIV'); - -delete from sequenceanalysis.ref_nt_sequences where name ='GHNJ196'; -insert into sequenceanalysis.ref_nt_sequences (name,category,subset,mol_type,species,genbank,sequence) values -('GHNJ196', 'Virus', 'GHNJ196', 'RNA', 'HIV', 'AB231898', 'TGGATGGGCTAATTTACTCCAAGAAAAGACAGGAGATCCTTGATCTGTGGGTCTATCACACACAAGGATTCTTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATACCCACTGACCTTTGGATGGTGCTTCAAACTAGTACCAATAGATCCAGCAGAGGTAGAGGAAGCCAATGAAGGAGAGAACAACGTCTTATTACACCCCATCTGCCAGCATGGAATGGATGATGAAGACAGAGAAGTACTGGTCTGGAAGTTTGACAGCCGCCTGGCATTCACACACACAGCAAGAGAGCTGCATCCGGAGTTTTACAAAGACTGTTGACACAGAAGTTGCTGACAGGGACTTTCTGCCTGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTGTGGGAGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTCTAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCAATTTAGTCTTGGTAAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCGGAAGTTAATAGGGACGCGAAAGCGAAAGTTCCAGAGAAGTATCTCGACGCACGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTGCGGCCAGGGGGAAAGAAACAGTATAAACTAAAACATATAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCTCTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAGCTATTGGAACAGTTACAATCAACTCTCAGGACAGGATCAGAGGAACTTAAATCCTTATATAATACAATAGCAACCCTTTGGTGCGTACATCAAAGGATAGACATAAGAGACACCAAGGAAGCCTTAGATAAAATAGAGGAAGCTCAAAATAAGAGCAAACAAAAGACACAGCAGGCAGCAGCTGCCACAGGAAGCAGCAACCAAGTAAGAGTCAGCAGCCAAAATTTCCCTATAGTGCAAAATGCACAAGGGCAAATGATACATCAGTCCATGTCACCTAGGACTTTAAATGCATGGGTGAAGGTAATAGAAGAAAAGGGTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCGCCCCACAAGATTTAAATATGATGCTAAACATAGTGGGGGGACATCAGGCAGCAATGCAGATGTTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGAGTACATCCAGTACATGCAGGGCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGGGTGGATGACAAGCAATCCACCTATCCCAGTGGGAGAAATTTATAAAAGATGGATAGTTCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGACAGGTTCTTTAAAACTTTAAGAGCTGAACAAGCTACACAGGATGTAAAGAACTGGATGACAGAAACCTTGCTGGTCCAAAATGCTAATCCAGACTGTAAGACCATTTTAAGAGCATTAGGACCAGGGGCTTCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCATAAGGCAAGGGTTTTGGCTGAAGCAATGAGTCAAGCACAACAGTCCAATGTAATGATGCAGAGAGGCAATTTTAGGGGCCAGAGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGGCCCCTAGGAAAAGGGGTTGTTGGAAGTGTGGGAAGGAAGGACACCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGAAATTTTCCTCAGAGCAGACCGGAACCATCAGCCCCACCAGCAGAGAGCTTGGGGATGGGGGAAGAGGTAGCCTCAACCCCGAAGCAGGAGCCGGGGGACAAGGGAATATATCCTCCCTTAACTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGAATAGGGTGTCAGCTAATAGAAGCCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAAAAGTAGAATTACCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTTATAGAAATTTGTGGAAAAAGGGCCATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGGAATATGTTGACTCAGATTGGCTGTACTTTAAATTTTCCAATTAGTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGACATTTGTACAGAAATGGAAAAGGAAGGACAAATTTCAAAAATTGGCCCTGAAAATCCCTACAATACTCCAGTATTTGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAGCTTAATAAAAGACCTCAAGACTTCTGGGAGGTCCAATTAGGAATACCTCACCCAGCAGGATTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCTTACATGAAGACTTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCAGGAATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGGCAAGCATGACAAAAATCTTAGAGCCCTTTAGAACAAACAATCCAGAAATGGTGATCTACCAATACATGGATGATTTATATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGCAAAAATAGAGGAGTTGAGAGAACATCTACTGAAATGGGGATTTACCACACCAGACAAAAAACATCAGAAGGAACCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAACATATAGAACTGCCAGAAAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCGAGTCAAATTTATCCTGGAATTAAAGTAAGGCAACTGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTAACACTGACTGAGGAAGCAGAATTAGAATTGGCAGAGAACAGGGAAATTCTAAAAGAACCTGTACATGGAGTCTACTATGACCCAGCAAAAGACTTAGTAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATCAGGAACCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGCCCACACTAATGATGTAAAACAATTAACAGAGGTAGTACAAAAAGTGGCTACAGAGAGCATAATAATATGGGGAAAGACCCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGATGGATTATTGGCAAGCTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGTACCAATTAGAAAAAGACCCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCAAATAGGGAGACTAAACTAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTGGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATTCATCTAGCCTTGCAAGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAGTATGCATTAGGAATTATTCAGGCACAACCAGACAAGAGTGACTCAGAAATAGTCAATCTAATAATAGAAAAACTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAGAGTACTATTTTTAGATGGCATAGATAAAGCCCAAGAAGAACATGAAAGATATCATAGCAATTGGAGAGCAATGGCTAATGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTGGCTACATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAAACAGCATACTTTATATTAAAGTTAGCAGGAAGATGGCCAGTGAGAGTAATACACACAGACAATGGCAGCAATTTCACCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAGATGTCAAACAAGAATTTGGAATTCCCTACAATCCCCAAAGCCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTCAGGGATCAAGCTGAGCACCTTAAGACAGCAGTACAGATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCATCAGACATACAAACTAAAGAACTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCCATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAAGTAGTACCAAGGAGAAAAGCAAAAATCATTAAGGATTATGGAAAACAGATGGCAGGTGATGACTGTGTGGCAGGTAGACAGGATGAAGATTAGGACATGGAACAGTTTAGTAAAGCATCATATGTATGTCTCTAAGAAAGCTAAGGATTGGTTTTATAGACATCATTTTGAAAGTAGACATCCAAAAGCAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAGTAGTAAGAACCTATTGGGGTTTGAATACAGGAGAAAGAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGGCAGAGAAGGTATAGCACACAAATAGATCCTGACCTAGCTGACCAACTGATTCACCTGTATTATTTTGACTGTTTTTCAGAATCTGCCATAAGGAAAGTCCTATTAGGACAAGTAGTTAGACCTAGTTGTGAATATCAAGCAGGACACAGTAAGGTAGGATCGCTACAATATTTGGCACTGAAAGCATTAGTAGCACCAACAAGGAGAAAGCCACCTTTACCTAGTGTTAAGAAGTTAACAGAAGATCGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAACCGTCCAATCAATGGACACTAGAACTGTTAGAGGAGCTTAAACAAGAAGCTGTTAGACATTTTCCTAGGCCGTGGCTTCATGGATTAGGACAATATATCTATAACACATATGGGGACACTTGGGAAGGGGTTGAAGCTATAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATTCGAGGGAGAAGAGGCAGGAATGGATCTGGTAGATCCTAACCTAGATCCATGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAGCAAGTGTTATTGTAAAATATGCTGCTGGCATTGCCAATTGGGCTTTCTGAACAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACCCCGACGAGGAACTCCTCAGAACCGTCAGGATTATCAAAATCCTGCACCAAAGCAGTGAGTAGTGCTAATTAGTATATATGATGCAATCCTTAGTAATAGCTGCAATAGTAGGACTAGTAGTAGCATTCATAGCAGCCATAGTTGTGTGGACCATAGAGTATATAGAATATAGAAGAATAAGGAAACAAAAACAAATAGATAGGTTACTTGATAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGATGGGGACACAGAAGAATTATCCATGCTTGTGGAGGTGGGGGATTATAATCTTTTGGATAATGCTGATATGTAAGGGTGAAGATCTGTGGGTCACGGTCTATTATGGGGTACCTGTGTGGAGAGACGCAGATACCACCCTGTTTTGTGCATCAGATGCGAAATCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGATCCTAGCCCACAAGAAATATATTTGGAAAATGTAACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAAGATATAATTAGTCTATGGGACCAAAGCTTAAAACCATGTGTAGAGTTAACCCCTCTCTGCGTTACTTTAGAGTGTCATAGTGTCACCAACAGCAGTGAGAACAAAATTGGCAACATATCTATTGAAATGCAAGGGGAAATAAAAAACTGCTCTTTCAATATGACCACAGAACTACGAGACAAGAATCGGAAAATGCATGCACTTTTTTATAGACAAGATATAGTACCAATGAATGAAAGTTTAGTATCAATAAATACAACTAACAGCACTGATCAGTATAGGTTAATAAATTGTAATACCTCAACCGTTACACAGGCTTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCTGCTGGTTTTGCAATTCTGAAATGTAATGATAAGAATTTCAATGGAACAGGGCTATGCAGGAATGTCAGTACAGTACAATGCACACATGGAATCAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAAGAGAGGTAGTGATTAGATCTGAAAATTTCTCAGATAATGCCAAAACCATAATAGTACAGTTAGCTAAGCCTGTACAAATTAATTGTACCAGACCTAACAACAATACAAGAACAGGTATACATATGGGACTAGGGCGAACATTCTATGCAACAGGTGACATAATAGGGGATATAAGACAAGCACATTGTAATGTTAGTGCAAAAGCTTGGAATGATACTTTACAACAGGTGGCCACACAATTAGGGAAGCACTACGGTGGTAACACAACAATCATATTTACTAACCACTCAGGAGGGGATGTAGAAATTATGACACATACTTTTAATTGTGGAGGAGAATTTTTCTATTGCAATACATCAAGACTGTTTAATAGCAATTGGAAAAACGGTACTGCCAGCTCAAATGGCACTGCAAATGACATTATAACTCTCCAATGCAGAATAAGGCAAATTATAAATATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCCCAGGAGTAATAAGGTGTGAGTCAAACATTACAGGACTACTATTAACAAGAGATGGAGGGAAAAATACTAGTGGTGTAAATGAGACTTTCAGACCTGAAGGAGGAAATATGAAAGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAATAAAAATTGAACCACTAGGTGTAGCACCCACCCGTGCAAGAAGAAGAGTGGTGGGAAGAGAAAAAAGAGCAATAGGTGGACTGGGAGCTGCCCTCCTTGGGTTCCTAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAGCAATCTGCTGAGGGCTATAAAGGCTCAACAAGAACTGTTGAGACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCTGGAGGGATACCTAAGGGATCAGCAGCTCCTAGGAATTTGGGGATGCTCTGGAAGACTCATCTGCACCACTAATGTACCCTGGAACTCTACTTGGAGTAATAAAACTTATAATGACATATGGGGGAACATGACCTGGCTGGAATGGGATAGAGAAATTAGCAATTACACAGACATAATATATAATCTAATTGAAGTATCGCAAAACCAGCAGGAAAAGAATGAACAAGACTTATTGGCATTGGACAAGTGGGCAAGTCTGTGGAGTTGGTTTAGCATAACAAATTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTGCTGTACTTACTATAATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCTTACCCACCACCAGAGGGATCCAGGCAGACCAGAAAGAATCGAAGAAGAAGGTGGCGAGCAAGCCAGAGCCAGATCCGTGCGATTAGTGAGCGGCTTCTTAGCTCTTGCCTGGGACGACCTAAGGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGAGACTTACTCTTGATTCTGGGACACAGCAGCCTCAAGAGCCTGCAACTGGGGTGGGAAGCCCTCAAATATCTGTGGAATCTTCTAACATACTGGGGTCAGGAACTAAGGAATAGTGCTATTAGTTTGCTTGATACCATAGCAATAGCAGTAGCTAACTGGACAGACAGAGTCATAGAAATAGGACAAAGAATTGCTAGAGCTATTTGCAACATACCTAGAAGAATCAGACAGGGTCTTGAAAGGGCTTTGATATAACATGGGCAGCAAGCTTTCAAAAAGCCGCATAGTGGGATGGGCTAGGGTTAGGGAAAGACTAAGACGAACCCCTCCAACAGCAGAAAGAGTAAGACGACCCCCTCCAGCAGCAGAAGGGGCAGGAGCAACATCTCAAGCAGCAGTAGGAGTAGGAGCAGCATCTCAAGATTTAGCGAGACATGGAGCAATCACAAGCAGTAATACATCAAGTACTAATGCTGATTGTGCCTGGCTGGAAGCACAAGAGGAAGAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCACAGGTACCTTTGAGACCAATGACTTATAAGGCAGCTGTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCAAGAAAAGACAGGAGATCCTTGATCTGTGGGTCTATCACACACAAGGATTCCTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATACCCACTGACCTTTGGATGGTGCTTCAAACTAGTACCAATAGATCCAGCAGAGGTAGAGGAAGCCAATGAAGGAGAGAACAACGTCTTATTACACCCCATCTGCCAGCATGGAATGGATGATGAAGACAGAGAAGTACTGGTCTGGAAGTTTGACAGCCGCCTGGCATTCACACACACAGCAAGAGAGCTGCATCCGGAGTTTTACAAAGACTGTTGACACAGAAGTTGCTGACAGGGACTTTCTGCCTGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTGTGGGAGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGC'); - - -delete from sequenceanalysis.ref_aa_sequences WHERE ref_nt_id = (SELECT n.rowid FROM sequenceanalysis.ref_nt_sequences n where n.name ='GHNJ196'); ---ugly hack to work on SQLServer 2005. 2005 doesnt allow subselect on insert, so we insert using a placeholder, then update -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('813-2309', 813, 'MGARASVLSGGKLDAWEKIRLRPGGKKQYKLKHIVWASRELERFALNPGLLETAEGCQQLLEQLQSTLRTGSEELKSLYNTIATLWCVHQRIDIRDTKEALDKIEEAQNKSKQKTQQAAAATGSSNQVRVSSQNFPIVQNAQGQMIHQSMSPRTLNAWVKVIEEKGFSPEVIPMFSALSEGAAPQDLNMMLNIVGGHQAAMQMLKDTINEEAAEWDRVHPVHAGPIPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPIPVGEIYKRWIVLGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFFKTLRAEQATQDVKNWMTETLLVQNANPDCKTILRALGPGASLEEMMTACQGVGGPSHKARVLAEAMSQAQQSNVMMQRGNFRGQRTIKCFNCGKEGHLARNCKAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFPQSRPEPSAPPAESLGMGEEVASTPKQEPGDKGIYPPLTSLKSLFGNDP*', 'Gag', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('2111-5125', 2111, 'FFRENLAFQQGEARKFSSEQTGTISPTSRELGDGGRGSLNPEAGAGGQGNISSLNFPQITLWQRPLVTVRIGCQLIEALLDTGADDTVLEEKVELPGKWKPKMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGQISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRPQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLHEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTNNPEMVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQHIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVTLTEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQDQWTYQIYQEPFKNLKTGKYAKKRSAHTNDVKQLTEVVQKVATESIIIWGKTPKFRLPIQKETWEAWWMDYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSDSEIVNLIIEKLIEKDKVYLSWVPAHKGIGGNEQVDKLVSNGIRRVLFLDGIDKAQEEHERYHSNWRAMANDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVRVIHTDNGSNFTSAAVKAACWWADVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIASDIQTKELQKQIIKIQNFRVYYRDSRDPIWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQMAGDDCVAGRQDED*', 'Pol', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5070-5648', 5070, 'MENRWQVMTVWQVDRMKIRTWNSLVKHHMYVSKKAKDWFYRHHFESRHPKASSEVHIPLGDARLVVRTYWGLNTGERDWHLGHGVSIEWRQRRYSTQIDPDLADQLIHLYYFDCFSESAIRKVLLGQVVRPSCEYQAGHSKVGSLQYLALKALVAPTRRKPPLPSVKKLTEDRWNKPQKTRGHRGNRPINGH*', 'Vif', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5588-5878', 5588, 'MEQAPEDQGPQREPSNQWTLELLEELKQEAVRHFPRPWLHGLGQYIYNTYGDTWEGVEAIIRILQQLLFVHFRIGCQHSRIGIIRGRRGRNGSGRS*', 'Vpr', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5859-6073;8426-8516', 5859, 'MDLVDPNLDPWNHPGSQPTTACSKCYCKICCWHCQLGFLNKGLGISYGRKKRRPRRGTPQNRQDYQNPAPKQPLPTTRGIQADQKESKKKVASKPEPDPCD*', 'Tat', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5998-6073;8426-8700', 5998, 'MAGRSGDPDEELLRTVRIIKILHQSNPYPPPEGSRQTRKNRRRRWRASQSQIRAISERLLSSCLGRPKEPVPLQLPPIERLTLDSGTQQPQEPATGVGSPQISVESSNILGSGTKE*', 'Rev', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6100-6345', 6100, 'MQSLVIAAIVGLVVAFIAAIVVWTIEYIEYRRIRKQKQIDRLLDRIRERAEDSGNESDGDTEELSMLVEVGDYNLLDNADM*', 'Vpu', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6263-8842', 6263, 'MRVMGTQKNYPCLWRWGIIIFWIMLICKGEDLWVTVYYGVPVWRDADTTLFCASDAKSYDTEVHNVWATHACVPTDPSPQEIYLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVELTPLCVTLECHSVTNSSENKIGNISIEMQGEIKNCSFNMTTELRDKNRKMHALFYRQDIVPMNESLVSINTTNSTDQYRLINCNTSTVTQACPKVSFEPIPIHYCAPAGFAILKCNDKNFNGTGLCRNVSTVQCTHGIKPVVSTQLLLNGSLAEREVVIRSENFSDNAKTIIVQLAKPVQINCTRPNNNTRTGIHMGLGRTFYATGDIIGDIRQAHCNVSAKAWNDTLQQVATQLGKHYGGNTTIIFTNHSGGDVEIMTHTFNCGGEFFYCNTSRLFNSNWKNGTASSNGTANDIITLQCRIRQIINMWQKVGKAMYAPPIPGVIRCESNITGLLLTRDGGKNTSGVNETFRPEGGNMKDNWRSELYKYKVIKIEPLGVAPTRARRRVVGREKRAIGGLGAALLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLRAIKAQQELLRLTVWGIKQLQARVLALEGYLRDQQLLGIWGCSGRLICTTNVPWNSTWSNKTYNDIWGNMTWLEWDREISNYTDIIYNLIEVSQNQQEKNEQDLLALDKWASLWSWFSITNWLWYIKIFIMIVGGLIGLRIVFAVLTIINRVRQGYSPLSFQTLTHHQRDPGRPERIEEEGGEQARARSVRLVSGFLALAWDDLRSLCLFSYHRLRDLLLILGHSSLKSLQLGWEALKYLWNLLTYWGQELRNSAISLLDTIAIAVANWTDRVIEIGQRIARAICNIPRRIRQGLERALI*', 'Env', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('8844-9530', 8844, 'MGSKLSKSRIVGWARVRERLRRTPPTAERVRRPPPAAEGAGATSQAAVGVGAASQDLARHGAITSSNTSSTNADCAWLEAQEEEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSKKRQEILDLWVYHTQGFLPDWQNYTPGPGIRYPLTFGWCFKLVPIDPAEVEEANEGENNVLLHPICQHGMDDEDREVLVWKFDSRLAFTHTARELHPEFYKDC*', 'Nef', -1); ---see above -UPDATE sequenceanalysis.ref_aa_sequences SET ref_nt_id = (SELECT n.rowid FROM sequenceanalysis.ref_nt_sequences n where n.name ='GHNJ196') WHERE ref_nt_id = -1; - - -delete from sequenceanalysis.virus_strains where virus_strain ='NC_001722'; -insert into sequenceanalysis.virus_strains (virus_strain,genbank,species) values ('NC_001722', 'NC_001722', 'HIV'); - -delete from sequenceanalysis.ref_nt_sequences where name ='NC_001722'; -insert into sequenceanalysis.ref_nt_sequences (name,category,subset,mol_type,species,genbank,sequence) values -('NC_001722', 'Virus', 'NC_001722', 'RNA', 'HIV', 'NC_001722', 'TGCAAGGGATGTTTTACAGTAGGAGGAGACATAGAATCCTAGACATATACCTAGAAAAAGAGGAAGGGATAATACCAGATTGGCAGAATTATACTCATGGGCCAGGAGTAAGGTACCCAATGTACTTCGGGTGGCTGTGGAAGCTAGTATCAGTAGAACTCTCACAAGAGGCAGAGGAAGATGAGGCCAACTGCTTAGTACACCCAGCACAAACAAGCAGACATGATGATGAGCATGGGGAGACATTAGTGTGGCAGTTTGACTCCATGCTGGCCTATAACTACAAGGCCTTCACTCTGTACCCAGAAGAGTTTGGGCACAAGTCAGGATTGCCAGAGAAAGAATGGAAGGCAAAACTGAAAGCAAGAGGGATACCATATAGTGAATAACAGGAACAACCATACTTGGTCAAGGCAGGAAGTAGCTACTAAGAAACAGCTGAGGCTGCAGGGACTTTCCAGAAGGGGCTGTAACCAAGGGAGGGACATGGGAGGAGCTGGTGGGGAACGCCCTCATACTTACTGTATAAATGTACCCGCTTCTTGCATTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATCGAGCCCTGAGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTGGACTCTCACCAGTACTTGGCCGGTACTGGGCAGACGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCAGTTAGAAGCAAGTTAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATTCGGTGTTCATCTGAGTAACAAGACCCTGGTCTGTTAGGACCCTTCTCGCTTTGGGAATCCAAGGCAGGAAAATCCCTAGCAGGTTGGCGCCCGAACAGGGACTTGAAGAGGACTGAGAAGCCCTGGAACTCGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACAAACCACGACGGAGTGCTCCTAGAAAGGCGCGGGCCGAGGTACCAAAGGCGGCGTGTGGAGCGGGAGTGAAAGAGGCCTCCGGGTGAAGGTAAGTACCTACACCAAAAACTGTAGCCAGAAAAGGCTTGTTATCCTACCTTTAGACAGGTAGAAGATTGTGGGAGATGGGCGCGAGAAACTCCGTCTTGAGAGGGAAAAAAGCAGACGAATTAGAAAAAGTTAGGTTACGGCCCGGCGGAAAGAAAAAGTACAGGTTAAAACATATTGTGTGGGCAGCGAATGAATTGGATAAATTCGGATTGGCAGAGAGCCTGTTGGAGTCAAAAGAAGGTTGCCAAAAGATTCTCAGAGTTTTAGATCCATTAGTACCAACAGGGTCAGAAAATTTAAAAAGCCTTTTTAATACCGTCTGCGTCATTTGGTGCTTGCACGCAGAAGAGAAAGTGAAAGATACTGAGGAAGCAAAGAAACTAGCACAGAGACATCTAGTGGCAGAAACTGGAACTGCAGAGAAAATGCCAAATACAAGTAGACCAACAGCACCACCTAGTGGGAAAAGAGGAAACTACCCCGTGCAACAAGCGGGTGGCAACTATGTCCATGTGCCACTGAGCCCCCGAACTCTAAATGCATGGGTAAAATTAGTGGAGGAAAAGAAGTTCGGGGCAGAAGTAGTGCCAGGATTTCAGGCACTCTCAGAAGGCTGCACGCCCTATGATATTAATCAAATGCTTAATTGTGTGGGCGATCACCAAGCAGCTATGCAAATAATCAGAGAGATTATTAATGAAGAAGCAGCAGACTGGGATTCGCAGCACCCAATACCAGGCCCCTTACCAGCAGGACAGCTCAGAGACCCAAGAGGGTCTGACATAGCAGGAACAACAAGCACAGTAGATGAACAGATCCAGTGGATGTATAGGCCACAAAATCCCGTACCGGTAGGGAACATCTACAGAAGATGGATCCAAATAGGGCTGCAAAAGTGTGTCAGAAAGTACAACCCAACTAACATCTTAGACATAAAACAGGGACCAAAAGAACCGTTCCAAAGCTATGTAGACAGGTTCTACAAAAGCTTGAGGGCAGAACAAACAGACCCAGCAGTAAAAAATTGGATGACCCAAACGCTGCTAATACAGAATGCCAACCCAGACTGCAAGTTAGTACTAAAAGGACTGGGGATGAATCCCACCCTAGAAGAGATGCTAACCGCCTGCCAGGGGGTAGGCGGACCAGGCCAGAAAGCCAGGCTAATGGCTGAAGCCCTAAAAGAGGCTATGGGACCAAGCCCTATCCCATTTGCAGCAGCCCAACAAAGAAAGGCAATTAGGTATTGGAACTGTGGAAAGGAGGGACACTCGGCAAGACAGTGCCGAGCACCTAGAAGACAGGGCTGCTGGAAGTGTGGCAAGCCAGGACACATCATGGCAAACTGCCCGGAAAGACAGGCAGGTTTTTTAGGGTTGGGCCCACGGGGAAAGAAGCCTCGCAACTTCCCCGTGACCCAAGCCCCTCAGGGGCTGATACCAACAGCACCTCCGGCAGATCCAGCAGCGGAACTGTTGGAGAGATATATGCAGCAAGGGAGAAAGCAGAGGGAGCAGAGGGAGAGACCATACAAAGAGGTGACGGAGGACTTGCTGCACCTCGAGCAGAGAGAGACACCTCACAGAGAGGAGACAGAGGACTTGCTGCACCTCAATTCTCTCTTTGGAAAAGACCAGTAGTCACAGCGTACATCGAGGATCAGCCGGTAGAAGTCTTACTAGACACAGGGGCTGATGACTCAATAGTAGCAGGAATAGAATTAGGGGACAATTACACTCCAAAAATAGTAGGGGGAATAGGGGGATTTATAAACACCAAAGAATACAAAAATGTAGAAATAAAAGTACTAAATAAAAGAGTAAGAGCCACCATAATGACAGGAGATACCCCAATCAACATCTTTGGCAGAAATATTCTGACAGCCTTAGGCATGTCATTAAATTTACCAGTTGCCAAGATAGAGCCAATAAAAGTAACATTGAAGCCAGGGAAAGATGGACCAAGGCTGAAACAATGGCCCCTAACAAAAGAGAAAATAGAAGCACTAAAAGAGATCTGTGAAAAAATGGAAAAAGAGGGCCAGCTAGAAGAGGCACCTCCAACTAATCCTTATAATACCCCCACATTTGCAATTAAGAAAAAGGACAAGAACAAATGGAGGATGCTGATAGATTTTAGAGAACTAAATAAGGTGACTCAAGATTTCACAGAAATTCAGCTAGGAATTCCACACCCGGCAGGACTAGCCAAAAAGAAAAGGATCTCTATATTAGATGTAGGGGATGCCTATTTTTCCATACCACTACATGAAGATTTTAGGCAGTATACTGCATTTACCCTACCAGCAGTAAACAATATGGAACCAGGAAAAAGATATATATATAAAGTCTTGCCACAAGGATGGAAGGGATCACCAGCAATTTTTCAATACACAATGAGGCAAGTCTTAGAACCTTTCAGAAAAGCAAACCCAGATGTCATTCTCATCCAGTACATGGATGATATCTTAATAGCTAGTGACAGGACAGGTTTAGAGCATGACAAAGTGGTCCTGCAGCTAAAAGAACTTCTAAATGGCCTAGGGTTTTCTACTCCAGATGAGAAGTTCCAAAAAGACCCTCCATTTCAATGGATGGGCTGTGAACTATGGCCAACTAAATGGAAGCTGCAGAAACTACAACTGCCCCAGAAAGACATATGGACAGTCAATGACATCCAAAAGCTAGTGGGAGTCTTAAATTGGGCGGCACAAATCTATTCAGGAATAAAAACCAAACACTTATGTAGACTAATTAGAGGAAAAATGACACTCACAGAAGAAGTGCAGTGGACAGAACTAGCAGAAGCAGAGCTAGAAGAAAACAAAATTATCTTGAGCCAGGAACAAGAAGGATATTATTACCAAGAAGAAAAAGAATTAGAGGCAACAATCCAAAAAAGCCAAGGACATCAATGGACATACAAAATACACCAGGAAGAGAAAATCCTAAAAGTAGGAAAGTATGCAAAGATAAAAAATACCCATACCAATGGGGTCAGATTACTAGCACAGGTAGTTCAGAAAATAGGAAAAGAGGCACTAGTCATTTGGGGACGGATACCAAAATTTCACCTGCCAGTGGAGAGAGAGACCTGGGAGCAGTGGTGGGATAACTACTGGCAAGTGACATGGATCCCAGAGTGGGACTTTGTATCTACCCCACCACTGGTCAGGTTAACATTTAACCTAGTAGGAGATCCTATACCAGGCGCAGAGACCTTCTACACAGATGGATCATGCAATAGACAGTCAAAAGAGGGAAAAGCAGGATATGTAACAGATAGAGGAAAAGACAAAGTAAAAGTATTAGAACAAACTACCAATCAGCAGGCAGAATTAGAAGTCTTTCGGATGGCACTGGCAGACTCAGGCCCAAAGGTTAATATCATAGTAGATTCACAGTATGTAATGGGGATAGTAGCAGGCCAGCCAACAGAGTCAGAAAATAGAATAGTGAACCAGATCATAGAAGAAATGATAAAGAAGGAAGCAGTCTATGTTGCATGGGTCCCAGCCCATAAAGGCATAGGAGGAAACCAGGAAGTAGACCATTTAGTAAGTCAAGGCATCAGACAAGTATTATTCCTGGAAAAGATAGAGCCCGCTCAAGAGGAACATGAAAAATATCATAGCATTATAAAAGAACTAACCCATAAATTTGGAATACCCCTTCTAGTAGCAAGACAGATAGTAAACTCATGTGCCCAATGCCAACAGAAAGGAGAAGCCATACATGGGCAAGTAAATGCAGAAATAGGCGTTTGGCAAATGGACTACACACACTTAGAAGGAAAAATCATTATAGTAGCAGTACATGTTGCAAGTGGATTCATAGAAGCAGAAGTCATCCCACAGGAATCAGGAAGGCAGACAGCACTCTTCCTATTAAAACTGGCCAGTAGGTGGCCAATAACGCACTTGCACACAGACAATGGCCCCAACTTCACTTCACAGGAAGTGAAGATGGTGGCATGGTGGGTAGGTATAGAACAATCCTTTGGAGTACCTTACAACCCACAAAGCCAGGGAGTAGTAGAAGCAATGAATCACCACCTAAAGAATCAGATAAGTAGAATTAGAGAACAGGCAAATACAATAGAAACAATAGTACTGATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACCCCAGCAGAAAGACTAATCAACATGATTACCACAGAACAAGAAATACAATTCCTCCAAAGAAAAAATTCAAATTTTAAAAATTTCCAGGTCTATTACAGAGAAGGCAGAGATCAGCTGTGGAAAGGACCTGGTGAACTACTGTGGAAGGGAGAAGGAGCAGTCATAGTCAAGGTAGGGACAGACATAAAAGTAGTACCAAGAAGGAAGGCCAAGATTATCAGGGACTATGGAGGAAGACAGGAACTGGATAGTAGTCCCCACCTGGAGGGTGCCAGGGAGGATGGAGAAATGGCATGCCCTTGTCAAGTACCTGAAATACAGAACAAAAGACCTAGAGGAGGTGCGCTATGTTCCCCACCACAAGGTGGGATGGGCATGGTGGACTTGCAGCAGGGTAATATTCCCACTACAAGGAAAAAGTCATCTAGAAATACAGGCATATTGGAACCTAACACCAGAAAAAGGATGGCTCTCCTCTCATGCAGTAAGATTAACCTGGTATACAGAAAAGTTCTGGACAGATGTTACCCCAGACTGTGCAGACATCCTAATACATAGCACTTATTTCTCTTGCTTTACGGCAGGTGAAGTAAGAAGAGCCATCAGAGGGGAAAAGTTATTGTCCTGCTGCAACTATCCCCAAGCTCATAAAGCACAGGTACCATCACTTCAATACCTAGCCCTAGTAGTAGTACAACAAAATGACAGACCCCAGAGAAAGGGTACCGCCAGGAAACAGTGGAGAAGAGACCATTGGAGAGGCCTTCGAGTGGCTAGAGAGGACCATAGAAGCCTTAAACAGGGAGGCAGTGAACCATCTGCCCCGAGAGCTCATTTTCCAGGTGTGGCAAAGGTCCTGGAGATATTGGCATGATGAACAAGGGATGTCAGCAAGCTACACAAAGTATAGATATTTGTGCCTAATGCAAAAAGCTATATTTACACATTTCAAGAGAGGGTGCACTTGCTGGGGGGAGGACATGGGCCGGGAAGGATTGGAAGACCAAGGACCTCCCCCTCCTCCCCCTCCAGGTCTAGTCTAATGACTGAAGCACCAACAGAGTTTCCCCCAGAAGATGGGACCCCACGGAGGGACTTAGGGAGTGACTGGGTAATAGAAACTCTGAGGGAAATAAAGGAAGAAGCCTTAAGACATTTTGATCCCCGCTTGCTAATTGCTCTTGGCTACTATATCCATAATAGACATGGAGACACCCTTGAAGGCGCCAGAGAGCTCATTAAAACCCTACAACGAGCCCTCTTCGTGCACTTCAGAGCGGGATGTAACCGCTCAAGAATTGGCTAAACAAGGAGAAGAACTCCTTGCCCAGCTGCACCGACCCCTAGAGCCATGCACTAACAAATGCTATTGTAAGCGATGCAGTTTCCATTGCCAGCTGTGTTTCTCGAAAAAGGGGCTCGGAATATCATATGAGCGAAAGGGCAGACGAAGAAGGACTCCAAGGAAAACTAAGACTCCTTCGCCTTCTGCACCAGACAAGTGAGTATGGAGCCTGGTAGGAATCAGCTGTTTGTTGTCATTTTACTAACAAGTGCTTGCTTAGTATATTGTAGCCAGTATGTGACTGTTTTCTATGGCATACCCGCGTGGAAAAATGCATCTATTCCCTTATTTTGTGCAACTAAAAATAGAGACACTTGGGGGACCATACAGTGCTTGCCAGACAATGATGATTATCAGGAAATAATTTTAAATGTGACAGAGGCTTTTGATGCATGGAATAATACAGTGACAGAACAAGCAGTAGAAGATGTCTGGCATCTATTTGAGACATCAATAAAACCATGTGTCAAGCTAACACCTCTATGTGTGGCAATGAATTGTAGCAGGGTTCAAGGGAATACCACGACCCCGAATCCCAGGACCTCGAGTTCCACAACCTCGAGACCACCCACATCCGCAGCCTCCATAATAAATGAAACTTCTAACTGCATAGAAAACAACACATGCGCAGGATTAGGGTATGAGGAGATGATGCAATGTGAGTTCAATATGAAGGGGTTAGAACAAGATAAGAAAAGGAGGTATAAGGACACATGGTATTTAGAAGATGTGGTTTGTGACAACACAACAGCTGGCACATGTTACATGAGACATTGCAACACATCAATCATCAAAGAGTCATGTGATAAGCACTATTGGGATGCTATGAGGTTTAGATACTGTGCACCACCGGGCTTTGCCCTATTAAGATGTAATGATACCAACTATTCAGGCTTTGAACCTAAGTGCACTAAAGTAGTAGCTGCTTCATGCACAAGGATGATGGAAACGCAAACTTCTACTTGGTTTGGCTTTAATGGCACTAGAGCAGAAAATAGAACATATATCTATTGGCATGGCAGAGATAATAGGACTATCATTAGCTTAAACAAGTATTATAATCTCACAATGCGTTGTAAGAGACCAGGAAATAAGACAGTTTTACCAATAACACTTATGTCAGGATTAGTGTTTCACTCTCAGCCAATCAACACAAGGCCTAGGCAGGCATGGTGCCGGTTTGGAGGCAGATGGAGGGAAGCCATGCAGGAGGTGAAGCAAACCCTTGTACAACATCCCAGATACAAAGGAATCAATGATACAGGGAAAATTAACTTTACGAAACCGGGAGCAGGCTCAGACCCGGAAGTGGCATTTATGTGGACTAACTGCAGAGGAGAATTTCTCTACTGTAACATGACTTGGTTCCTCAATTGGGTAGAAGACAAGAACCAAACACGGCGCAACTATTGCCATATAAAGCAGATAATTAATACCTGGCATAAAGTAGGGAAAAATGTATATTTGCCTCCTAGGGAAGGGGAGTTGGCCTGTGAATCAACAGTAACCAGCATAATTGCTAACATTGACATAGATAAAAATCGGACTCATACCAACATTACCTTTAGTGCAGAAGTGGCAGAACTGTACCGATTAGAACTGGGAGACTACAAATTAATAGAAATAACACCAATTGGCTTCGCACCTACAGATCAGAGAAGGTACTCCTCAACTCCAGTGAGGAACAAAAGAGGTGTGTTCGTGCTAGGGTTCTTGGGTTTTCTCGCGACAGCAGGTTCTGCAATGGGCGCGCGGTCCCTGACGCTGTCAGCCCAGTCCCGGACTTTACTGGCCGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTAGTCAAGAGACAACAAGAAATGTTGCGACTGACCGTCTGGGGAACGAAAAACCTCCAGGCAAGAGTCACTGCTATCGAGAAGTACCTAAAGCATCAGGCACAGCTAAATTCATGGGGATGTGCGTTTAGACAGGTCTGCCACACTACTGTACCGTGGGTAAATGACTCTTTATCGCCTGACTGGAAAAATATGACATGGCAGGAGTGGGAGAAACAAGTCCGCTACCTAGAGGCAAATATCAGTCAAAGTTTAGAAGAAGCCCAAATTCAACAAGAAAAGAATATGTATGAATTACAAAAATTAAATAGCTGGGATATTCTTGGCAACTGGTTTGACTTAACCTCCTGGGTCAAGTATATTCAATATGGAGTGCATATAGTAGTGGGAATAATAGCTTTAAGAATAGCAATCTATGTAGTGCAATTGTTAAGTAGATTTAGAAAGGGCTATAGGCCTGTTTTCTCTTCCCCCCCCGGTTATCTCCAACAGATCCATATCCACAAGGACCGGGGACAGCCAGCCAACGAAGGAACAGAAGAAGACGTCGGAGGCGACAGTGGTTACGACTTGTGGCCTTGGCCAATAAACTATGTGCAGTTCCTGATCCACCTACTGACTCGCCTCTTGATCGGGCTATACAACATCTGCAGAGACTTACTATCCAAGAACTCCCCGACCCGCCGACTGATCTCCCAGAGTCTAACAGCAATCAGGGACTGGCTGAGACTTAAGGCGGCCCAACTGCAATATGGGTGCGAGTGGATCCAAGAAGCTTTCCAAGCATTCGCGAGGACTACGAGAGAGACTCTTGCGGGCGCGTGGGGATGGTTATGGGAAGCAGCGCGACGCATCGGGAGGGGAATACTCGCAGTTCCAAGAAGAATCAGGCAGGGAGCAGAACTCGCCCTCCTGTGAGGGACAGCAGTATCAGCAGGGAGAGTACATGAACAGCCCATGGAGAAACCCAGCAACAGAAAGACAGAAAGATTTGTATAGGCAGCAAAATATGGATGATGTAGATTCTGATGATGATGACCTAATAGGAGTTCCTGTTACACCAAGAGTACCACGGAGAGAAATGACCTATAAATTGGCAATAGATATGTCACATTTTATAAAAGAAAAAGGGGGACTGCAAGGGATGTTTTACAGTAGGAGGAGACATAGAATCCTAGACATATACCTAGAAAAAGAGGAAGGGATAATACCAGATTGGCAGAATTATACTCATGGGCCAGGAGTAAGGTACCCAATGTACTTCGGGTGGCTGTGGAAGCTAGTATCAGTAGAACTCTCACAAGAGGCAGAGGAAGATGAGGCCAACTGCTTAGTACACCCAGCACAAACAAGCAGACATGATGATGAGCATGGGGAGACATTAGTGTGGCAGTTTGACTCCATGCTGGCCTATAACTACAAGGCCTTCACTCTGTACCCAGAAGAGTTTGGGCACAAGTCAGGATTGCCAGAGAAAGAATGGAAGGCAAAACTGAAAGCAAGAGGGATACCATATAGTGAATAACAGGAACAACCATACTTGGTCAAGGCAGGAAGTAGCTACTAAGAAACAGCTGAGGCTGCAGGGACTTTCCAGAAGGGGCTGTAACCAAGGGAGGGACATGGGAGGAGCTGGTGGGGAACGCCCTCATACTTACTGTATAAATGTACCCGCTTCTTGCATTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATCGAGCCCTGAGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTGGACTCTCACCAGTACTTGGCCGGTACTGGGCAGACGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCAGTTAGAAGCAAGTTAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATTCGGTGTTCATCTGAGTAACAAGACCCTGGTCTGTTAGGACCCTTCTCGCTTTGGGAATCCAAGGCAGGAAAATCCCTAGCA'); - -delete from sequenceanalysis.ref_aa_sequences where ref_nt_id = (select n.rowid from sequenceanalysis.ref_nt_sequences n where name = 'NC_001722'); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('1103-2398;2398-5754', 1103, 'MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKDTEEAKKLAQRHLVAETGTAEKMPNTSRPTAPPSGKRGNYPVQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDSQHPIPGPLPAGQLRDPRGSDIAGTTSTVDEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILDIKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCPERQAGFFRVGPTGKEASQLPRDPSPSGADTNSTSGRSSSGTVGEIYAAREKAEGAEGETIQRGDGGLAAPRAERDTSQRGDRGLAAPQFSLWKRPVVTAYIEDQPVEVLLDTGADDSIVAGIELGDNYTPKIVGGIGGFINTKEYKNVEIKVLNKRVRATIMTGDTPINIFGRNILTALGMSLNLPVAKIEPIKVTLKPGKDGPRLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKKRISILDVGDAYFSIPLHEDFRQYTAFTLPAVNNMEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVILIQYMDDILIASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPFQWMGCELWPTKWKLQKLQLPQKDIWTVNDIQKLVGVLNWAAQIYSGIKTKHLCRLIRGKMTLTEEVQWTELAEAELEENKIILSQEQEGYYYQEEKELEATIQKSQGHQWTYKIHQEEKILKVGKYAKIKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERETWEQWWDNYWQVTWIPEWDFVSTPPLVRLTFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFRMALADSGPKVNIIVDSQYVMGIVAGQPTESENRIVNQIIEEMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSIIKELTHKFGIPLLVARQIVNSCAQCQQKGEAIHGQVNAEIGVWQMDYTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPNFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGELLWKGEGAVIVKVGTDIKVVPRRKAKIIRDYGGRQELDSSPHLEGAREDGEMACPCQVPEIQNKRPRGGALCSPPQGGMGMVDLQQGNIPTTRKKSSRNTGILEPNTRKRMALLSCSKINLVYRKVLDRCYPRLCRHPNT*', 'gag-pol fusion polyprotein', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('1103-2668', 1103, 'MGARNSVLRGKKADELEKVRLRPGGKKKYRLKHIVWAANELDKFGLAESLLESKEGCQKILRVLDPLVPTGSENLKSLFNTVCVIWCLHAEEKVKDTEEAKKLAQRHLVAETGTAEKMPNTSRPTAPPSGKRGNYPVQQAGGNYVHVPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAADWDSQHPIPGPLPAGQLRDPRGSDIAGTTSTVDEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRKYNPTNILDIKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEAMGPSPIPFAAAQQRKAIRYWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMANCPERQAGFLGLGPRGKKPRNFPVTQAPQGLIPTAPPADPAAELLERYMQQGRKQREQRERPYKEVTEDLLHLEQRETPHREETEDLLHLNSLFGKDQ*', 'gag polyprotein', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5423-6070', 5423, 'MEEDRNWIVVPTWRVPGRMEKWHALVKYLKYRTKDLEEVRYVPHHKVGWAWWTCSRVIFPLQGKSHLEIQAYWNLTPEKGWLSSHAVRLTWYTEKFWTDVTPDCADILIHSTYFSCFTAGEVRRAIRGEKLLSCCNYPQAHKAQVPSLQYLALVVVQQNDRPQRKGTARKQWRRDHWRGLRVAREDHRSLKQGGSEPSAPRAHFPGVAKVLEILA*', 'Vif', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('5898-6239', 5898, 'MTDPRERVPPGNSGEETIGEAFEWLERTIEALNREAVNHLPRELIFQVWQRSWRYWHDEQGMSASYTKYRYLCLMQKAIFTHFKRGCTCWGEDMGREGLEDQGPPPPPPPGLV*', 'Vpx', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6239-6502', 6239, 'MTEAPTEFPPEDGTPRRDLGSDWVIETLREIKEEALRHFDPRLLIALGYYIHNRHGDTLEGARELIKTLQRALFVHFRAGCNRSRIG*', 'Vpr', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6402-6697;8861-8957', 6402, 'METPLKAPESSLKPYNEPSSCTSERDVTAQELAKQGEELLAQLHRPLEPCTNKCYCKRCSFHCQLCFSKKGLGISYERKGRRRRTPRKTKTPSPSAPDKSISTRTGDSQPTKEQKKTSEATVVTTCGLGQ*', 'Tat', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6628-6697;8861-9102', 6628, 'MSERADEEGLQGKLRLLRLLHQTNPYPQGPGTASQRRNRRRRRRRQWLRLVALANKLCAVPDPPTDSPLDRAIQHLQRLTIQELPDPPTDLPESNSNQGLAET*', 'Rev', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('6704-9286', 6704, 'MEPGRNQLFVVILLTSACLVYCSQYVTVFYGIPAWKNASIPLFCATKNRDTWGTIQCLPDNDDYQEIILNVTEAFDAWNNTVTEQAVEDVWHLFETSIKPCVKLTPLCVAMNCSRVQGNTTTPNPRTSSSTTSRPPTSAASIINETSNCIENNTCAGLGYEEMMQCEFNMKGLEQDKKRRYKDTWYLEDVVCDNTTAGTCYMRHCNTSIIKESCDKHYWDAMRFRYCAPPGFALLRCNDTNYSGFEPKCTKVVAASCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMRCKRPGNKTVLPITLMSGLVFHSQPINTRPRQAWCRFGGRWREAMQEVKQTLVQHPRYKGINDTGKINFTKPGAGSDPEVAFMWTNCRGEFLYCNMTWFLNWVEDKNQTRRNYCHIKQIINTWHKVGKNVYLPPREGELACESTVTSIIANIDIDKNRTHTNITFSAEVAELYRLELGDYKLIEITPIGFAPTDQRRYSSTPVRNKRGVFVLGFLGFLATAGSAMGARSLTLSAQSRTLLAGIVQQQQQLLDVVKRQQEMLRLTVWGTKNLQARVTAIEKYLKHQAQLNSWGCAFRQVCHTTVPWVNDSLSPDWKNMTWQEWEKQVRYLEANISQSLEEAQIQQEKNMYELQKLNSWDILGNWFDLTSWVKYIQYGVHIVVGIIALRIAIYVVQLLSRFRKGYRPVFSSPPGYLQQIHIHKDRGQPANEGTEEDVGGDSGYDLWPWPINYVQFLIHLLTRLLIGLYNICRDLLSKNSPTRRLISQSLTAIRDWLRLKAAQLQYGCEWIQEAFQAFARTTRETLAGAWGWLWEAARRIGRGILAVPRRIRQGAELALL*', 'Env', -1); -insert into sequenceanalysis.ref_aa_sequences (exons,start_location,sequence,name,ref_nt_id) VALUES -('9120-9893', 9120, 'MGASGSKKLSKHSRGLRERLLRARGDGYGKQRDASGGEYSQFQEESGREQNSPSCEGQQYQQGEYMNSPWRNPATERQKDLYRQQNMDDVDSDDDDLIGVPVTPRVPRREMTYKLAIDMSHFIKEKGGLQGMFYSRRRHRILDIYLEKEEGIIPDWQNYTHGPGVRYPMYFGWLWKLVSVELSQEAEEDEANCLVHPAQTSRHDDEHGETLVWQFDSMLAYNYKAFTLYPEEFGHKSGLPEKEWKAKLKARGIPYSE*', 'Nef', -1); - -UPDATE sequenceanalysis.ref_aa_sequences SET ref_nt_id = (SELECT n.rowid FROM sequenceanalysis.ref_nt_sequences n where n.name ='NC_001722') WHERE ref_nt_id = -1; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.12-12.13.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.12-12.13.sql deleted file mode 100644 index 6a0e58e92..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.12-12.13.sql +++ /dev/null @@ -1,95 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -ALTER table sequenceanalysis.quality_metrics - add readset integer; - - ---delete orphan rows in non-existant containers. the container listener should handle future cases -DELETE from sequenceanalysis.sequence_readsets WHERE (select entityid from core.containers c where c.entityid = container) is null; -DELETE from sequenceanalysis.sequence_analyses WHERE (select entityid from core.containers c where c.entityid = container) is null; - ---then cleanup orphans lacking an analysis row -DELETE from sequenceanalysis.aa_snps WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; -DELETE from sequenceanalysis.nt_snps WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; -DELETE from sequenceanalysis.sequence_coverage WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; -DELETE from sequenceanalysis.sequence_reads WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; -DELETE from sequenceanalysis.sequence_alignments WHERE (select rowid from sequenceanalysis.sequence_analyses a where a.rowid = analysis_id) is null; - ---update virus genbank IDs -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'AB231898' WHERE name = 'GHNJ196'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'NC_001802' WHERE name = 'HXB2'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'NC_001722' WHERE name = 'NC_001722'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SHIV-1157ipd3N4' WHERE name = 'DQ779174'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SHIV89.6P' WHERE name = 'U89134'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVmac239' WHERE name = 'M33262'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVmac251' WHERE name = 'M19499'; -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'SIVsmE543' WHERE name = 'U72748.2'; - -INSERT INTO sequenceanalysis.sequence_platforms (platform) VALUES ('MIXED'); - ---delete duplicate epitopes accidentally entered -update sequenceanalysis.ref_aa_features set comment = null where cast(comment as varchar(1000)) = ''; - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)), cast(r.comment as varchar(1000)) - having count(*) > 1 -); - ---also catch duplicates where the second one has a comment, but the first is blank -delete from sequenceanalysis.ref_aa_features -where rowid in ( - select min(rowid) from sequenceanalysis.ref_aa_features r - group by r.ref_aa_id, r.aa_start, r.aa_stop, r.name, cast(r.aa_sequence as varchar(1000)) - having count(*) > 1 -) and comment is null; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.13-12.14.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.13-12.14.sql deleted file mode 100644 index 6f5c2e01e..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.13-12.14.sql +++ /dev/null @@ -1,52 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -alter table sequenceanalysis.sequence_readsets drop column qc_file; -alter table sequenceanalysis.sequence_readsets drop column qc_file2; - -alter table sequenceanalysis.sequence_analyses drop column qc_file; - -drop table sequenceanalysis.virus_strains; -drop table sequenceanalysis.samples; - -create table sequenceanalysis.illumina_templates ( - name varchar(100) not null, - json varchar(4000), - editable bit default 1, - - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - constraint PK_illumina_templates PRIMARY KEY (name) -); - -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Default', '{' + - 'Header: [["Template",""],["IEMFileVersion","3"],["Assay",""],["Chemistry","Default"]],' + - 'Reads: [["151",""], ["151",""]]' + - '}', 0 -); - -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Resequencing', '{' + - 'Header: [["Template","Resequencing"],["IEMFileVersion","3"],["Assay","TruSeq DNA/RNA"],["Chemistry","Default"]],' + - 'Reads: [["151",""], ["151",""]],' + - 'Settings: [["OnlyGenerateFASTQ","1"]]' + - '}', 1 -); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.14-12.15.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.14-12.15.sql deleted file mode 100644 index 3a85c5ffa..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.14-12.15.sql +++ /dev/null @@ -1,34 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ ---reinsert, using more strict json -delete from sequenceanalysis.illumina_templates; - -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Default', '{' + - '"Header": [["Template",""],["IEMFileVersion","3"],["Assay",""],["Chemistry","Default"]],' + - '"Reads": [["151",""], ["151",""]]' + - '}', 0 -); - -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Resequencing', '{' + - '"Header": [["Template","Resequencing"],["IEMFileVersion","3"],["Assay","TruSeq DNA/RNA"],["Chemistry","Default"]],' + - '"Reads": [["151",""], ["151",""]],' + - '"Settings": [["OnlyGenerateFASTQ","1"]]' + - '}', 1 -); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.15-12.16.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.15-12.16.sql deleted file mode 100644 index 766b77b40..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.15-12.16.sql +++ /dev/null @@ -1,48 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -DROP TABLE sequenceanalysis.module_properties; - -ALTER TABLE sequenceanalysis.aa_snps - ADD CONSTRAINT fk_aa_snps_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.quality_metrics - ADD CONSTRAINT fk_quality_metrics_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.nt_snps - ADD CONSTRAINT fk_nt_snps_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_alignments - ADD CONSTRAINT fk_sequence_alignments_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_analyses - ADD CONSTRAINT fk_sequence_analyses_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_coverage - ADD CONSTRAINT fk_sequence_coverage_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_reads - ADD CONSTRAINT fk_sequence_reads_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.sequence_readsets - ADD CONSTRAINT fk_sequence_readsets_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.16-12.17.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.16-12.17.sql deleted file mode 100644 index a60b869d9..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.16-12.17.sql +++ /dev/null @@ -1,68 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ ---delete any orphan AA records -DELETE FROM sequenceanalysis.ref_aa_sequences WHERE ref_nt_id NOT IN (select rowid from sequenceanalysis.ref_nt_sequences); - -ALTER TABLE sequenceanalysis.quality_metrics - ADD CONSTRAINT fk_quality_metrics_metricname FOREIGN KEY (metricname) - REFERENCES sequenceanalysis.quality_metrics_types (type) - ON UPDATE CASCADE; - ---NOTE: these deletes were added after initial checkin to hedge against existing installs w/ orphan data -delete from sequenceanalysis.aa_snps where nt_snp_id NOT IN (select rowid from sequenceanalysis.nt_snps); -delete from sequenceanalysis.nt_snps where alignment_id NOT IN (select rowid from sequenceanalysis.sequence_alignments); -delete from sequenceanalysis.ref_aa_features where ref_aa_id not in (select rowid from sequenceanalysis.ref_aa_sequences); -delete from sequenceanalysis.drug_resistance where ref_aa_id not in (select rowid from sequenceanalysis.ref_aa_sequences); -delete from sequenceanalysis.ref_nt_features where ref_nt_id not in (select rowid from sequenceanalysis.ref_nt_sequences); -delete from sequenceanalysis.sequence_alignments where ref_nt_id not in (select rowid from sequenceanalysis.ref_nt_sequences); -delete from sequenceanalysis.sequence_alignments where analysis_id not in (select rowid from sequenceanalysis.sequence_analyses); -delete from sequenceanalysis.sequence_coverage where ref_nt_id not in (select rowid from sequenceanalysis.ref_nt_sequences); - -ALTER TABLE sequenceanalysis.aa_snps - ADD CONSTRAINT fk_aa_snps_nt_snp FOREIGN KEY (nt_snp_id) - REFERENCES sequenceanalysis.nt_snps (rowid); - -ALTER TABLE sequenceanalysis.nt_snps - ADD CONSTRAINT fk_nt_snps_alignment FOREIGN KEY (alignment_id) - REFERENCES sequenceanalysis.sequence_alignments (rowid); - -ALTER TABLE sequenceanalysis.ref_aa_features - ADD CONSTRAINT fk_ref_aa_features_ref_aa FOREIGN KEY (ref_aa_id) - REFERENCES sequenceanalysis.ref_aa_sequences (rowid); - -ALTER TABLE sequenceanalysis.drug_resistance - ADD CONSTRAINT fk_drug_resistance_ref_aa FOREIGN KEY (ref_aa_id) - REFERENCES sequenceanalysis.ref_aa_sequences (rowid); - -ALTER TABLE sequenceanalysis.ref_aa_sequences - ADD CONSTRAINT fk_ref_aa_sequences_ref_nt FOREIGN KEY (ref_nt_id) - REFERENCES sequenceanalysis.ref_nt_sequences (rowid); - -ALTER TABLE sequenceanalysis.ref_nt_features - ADD CONSTRAINT fk_ref_nt_features_ref_nt FOREIGN KEY (ref_nt_id) - REFERENCES sequenceanalysis.ref_nt_sequences (rowid); - -ALTER TABLE sequenceanalysis.sequence_alignments - ADD CONSTRAINT fk_sequence_alignments_ref_nt FOREIGN KEY (ref_nt_id) - REFERENCES sequenceanalysis.ref_nt_sequences (rowid); - -ALTER TABLE sequenceanalysis.sequence_alignments - ADD CONSTRAINT fk_sequence_alignments_analysis FOREIGN KEY (analysis_id) - REFERENCES sequenceanalysis.sequence_analyses (rowid); - -ALTER TABLE sequenceanalysis.sequence_coverage - ADD CONSTRAINT fk_sequence_coverage_ref_nt FOREIGN KEY (ref_nt_id) - REFERENCES sequenceanalysis.ref_nt_sequences (rowid); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.20-12.21.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.20-12.21.sql deleted file mode 100644 index 2a6131e7d..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.20-12.21.sql +++ /dev/null @@ -1,422 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N701', 'TCGCCTTA', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N702', 'CTAGTACG', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N703', 'TTCTGCCT', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N704', 'GCTCAGGA', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N705', 'AGGAGTCC', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N706', 'CATGCCTA', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N707', 'GTAGAGAG', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N708', 'CCTCTCTG', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N709', 'AGCGTAGC', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N710', 'CAGCCTCG', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N711', 'TGCCTCTT', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N712', 'TCCTCTAC', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N501', 'TAGATCGC', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N502', 'CTCTCTAT', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N503', 'TATCCTCT', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N504', 'AGAGTAGA', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N505', 'GTAAGGAG', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N506', 'ACTGCATA', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N507', 'AAGGAGTA', 'Illumina'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('N508', 'CTAAGCCT', 'Illumina'); - -UPDATE sequenceanalysis.ref_nt_sequences set genbank = 'M33262' WHERE name = 'SIVmac239'; - -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0001', 'GTATCGTCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0002', 'GTGTATGCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0003', 'TGCTCGTAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0004', 'GTCGTCGTCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0005', 'GTGCGTGTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0006', 'GCGTCGTGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0007', 'GTCGTGTACT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0008', 'GATGTAGCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0009', 'GAGTGATCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0010', 'CGCTATCAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0011', 'CGCTGTAGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0012', 'GCTAGTGAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0013', 'GAGCTAGTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0014', 'CGTGCTGTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0015', 'GATCGTCTCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0016', 'GTGCTGTCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0017', 'TGAGCGTGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0018', 'CATGTCGTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0019', 'TCAGTGTCTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0020', 'GTGCTCATGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0021', 'CGTATCTCGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0022', 'GTCATGCGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0023', 'CTATGCGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0024', 'TGCTATGCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0025', 'TGTGTGCATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0026', 'GAGTGTCACT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0027', 'CTAGTCTCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0028', 'GAGTGCATCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0029', 'TGCGTAGTCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0030', 'CTGTGTCGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0031', 'CTGTAGTGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0032', 'GTGCGCTAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0033', 'TGTGCTCGCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0034', 'GATGCGAGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0035', 'CTGTACGTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0036', 'GCGATGATGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0037', 'TGTCGAGTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0038', 'GTCTACTGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0039', 'CAGTCAGAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0040', 'CGCAGTCTAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0041', 'GTATGAGCAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0042', 'CGAGTGCTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0043', 'TATAGCACGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0044', 'TCATGCGCGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0045', 'TATGCGCTGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0046', 'TCTCTGTGCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0047', 'CTATCGCGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0048', 'TACGCTGCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0049', 'CTGCATGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0050', 'CGCGTATCAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0051', 'GTATCTCTCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0052', 'GCTCATATGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0053', 'CACTATGTCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0054', 'TAGCGCGTAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0055', 'CGTCACAGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0056', 'TCGCGTGAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0057', 'TACATCGCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0058', 'GTGAGAGACA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0059', 'GACTGTACGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0060', 'GCACGTAGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0061', 'TCACGCTATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0062', 'CGTACTACGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0063', 'CAGCTGAGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0064', 'GAGATCAGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0065', 'TACTGAGCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0066', 'TAGTAGCGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0067', 'GACGTCTGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0068', 'GTACTCGCGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0069', 'TCTGAGCGCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0070', 'TAGACGTGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0071', 'GTGACTCGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0072', 'TCGAGTAGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0073', 'CGTATGATGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0074', 'TAGTCTGTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0075', 'TGTCTCTATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0076', 'CTAGAGTATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0077', 'TATCATGTGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0078', 'CATGAGTGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0079', 'TGTCGTCATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0080', 'TATCTCATGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0081', 'TGTGTCACTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0082', 'TATCGATGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0083', 'TAGAGTCTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0084', 'CATGCATCAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0085', 'TGATCAGTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0086', 'CGTCTATGAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0087', 'GTGATACTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0088', 'CTAGATCTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0089', 'TATCAGTCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0090', 'TCAGATGCTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0091', 'TATGTACGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0092', 'CTATACAGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0093', 'TGATACTCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0094', 'TCAGCGATAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0095', 'CTACTGATGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0096', 'GTAGTACACA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0097', 'TGCTACATCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0098', 'AGTGTGTCTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0099', 'TCATATCGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0100', 'TACGTATAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0101', 'CAGCTATAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0102', 'TCGATGCGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0103', 'GCACGCGTAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0104', 'GCAGTATGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0105', 'TGATAGAGAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0106', 'GCTACTAGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0107', 'TGCGAGACGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0108', 'CGATGACAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0109', 'GACTCATGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0110', 'GTCTGATACG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0111', 'ACTAGCTGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0112', 'GCGTAGACGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0113', 'CTCAGCAGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0114', 'CAGTCTACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0115', 'TACTGCAGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0116', 'TACACAGTAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0117', 'CACATACAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0118', 'CACAGTGATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0119', 'CGAGCTAGCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0120', 'GAGACTATGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0121', 'CAGAGCTAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0122', 'CGCAGAGCAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0123', 'TGTACAGCGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0124', 'ACGTCAGTAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0125', 'TCACAGCATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0126', 'ACTGCGTGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0127', 'CGATCGACTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0128', 'GCGAGATGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0129', 'CTGATGCAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0130', 'GTGACGTACG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0131', 'CGACGCTGAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0132', 'CTACGATCAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0133', 'GCACTAGACA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0134', 'CTAGCAGATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0135', 'CATGATACGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0136', 'GCAGCTGTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0137', 'ACGTATCATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0138', 'AGTATCGTAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0139', 'GATACACTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0140', 'GACTAGTCAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0141', 'GATGACTACG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0142', 'CAGAGAGTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0143', 'TCGATCGACA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0144', 'ACTGATGTAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0145', 'ACTCGATAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0146', 'GACGATCGCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0147', 'TCATCATGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0148', 'ACATGTCTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0149', 'AGTCATCGCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0150', 'TAGCATACAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0151', 'AGAGTCGCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0152', 'TCTACGACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0153', 'CACGAGATGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0154', 'ACGCACATAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0155', 'ACGTGCTCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0156', 'ACGATCACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0157', 'AGTGTACTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0158', 'TGATGTATGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0159', 'GATATATGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0160', 'TAGTACTAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0161', 'TATAGAGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0162', 'TCGATATCTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0163', 'TACATGATAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0164', 'TGAGATCATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0165', 'CTACATACTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0166', 'ATCAGTGTAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0167', 'ATCATATCTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0168', 'AGTAGATCAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0169', 'ACATAGTATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0170', 'ATGTATAGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0171', 'ACAGTCATAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0172', 'ACATATACGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0173', 'AGCATCTATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0174', 'AGACTATATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0175', 'CAGCATCTAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0176', 'CGAGACGACA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0177', 'ATCACTCATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0178', 'AGCTCTGTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0179', 'ATGTCATGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0180', 'GCTGACAGAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0181', 'ATACAGTCTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0182', 'CATAGACGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0183', 'AGAGATATCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0184', 'ATGCTGCGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0185', 'AGTCAGACGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0186', 'ACGATACACT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0187', 'AGCGAGTATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0188', 'ATCGCTACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0189', 'ATGCTAGAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0190', 'AGCAGTACTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0191', 'ATCTAGATCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0192', 'ATCGCATAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0193', 'TTGTTGCTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0194', 'GTGTGGTTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0195', 'TAGGTGGAAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0196', 'TGTAGGTGGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0197', 'TTAGTGGTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0198', 'GTGAAGGTAA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0199', 'TGTTGTGGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0200', 'GTTGATGAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0201', 'GGTCAGTGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0202', 'GTAATGGAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0203', 'CTCGTTATTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0204', 'GGAAGTAAGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0205', 'CGGTGTGTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0206', 'CGTCTTCTTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0207', 'TGTGAATCTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0208', 'CTAATCGTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0209', 'CTCTTAGTTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0210', 'GGATAGGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0211', 'GGTGTCTTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0212', 'GATGGTTGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0213', 'CCTCGTTGTT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0214', 'GGTTGGAGTT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0215', 'TGGTGTCCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0216', 'CGTTAGCGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0217', 'TACTAGGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0218', 'GTCTCAATGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0219', 'GATGAGGTAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0220', 'GGTGTTAGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0221', 'CATTCTCTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0222', 'CATCTGGAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0223', 'GAATGGAAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0224', 'GGCTGTGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0225', 'TGGTGCTGGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0226', 'TATGGTAAGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0227', 'GTTCGATTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0228', 'GGTAGAATGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0229', 'TTCTCATCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0230', 'CTCAATCGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0231', 'CGCTAATGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0232', 'GCGTCTGAAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0233', 'TTCTGTTGCC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0234', 'TTGTCCTTGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0235', 'CCTGTGTAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0236', 'GATAAGAAGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0237', 'CAGGTCACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0238', 'GCCATGTCAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0239', 'TCTGCCTATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0240', 'CTTAGTTCGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0241', 'CGTAATGAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0242', 'TTGCTTAGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0243', 'TCTTGTTCAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0244', 'GTGGCTTCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0245', 'TGTTCGATAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0246', 'TCATTCAGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0247', 'GTGGAGAGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0248', 'GTAGAAGTGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0249', 'TGGAGCATGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0250', 'GAAGGAGATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0251', 'CGAATGTATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0252', 'TCGTGAATGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0253', 'GAATAGCTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0254', 'TTGTCACATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0255', 'CTGGAGGCTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0256', 'TGTCAGCTTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0257', 'GTTCTTCGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0258', 'TTACACGTTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0259', 'GTAGCCAGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0260', 'TGAGAAGGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0261', 'CCATATGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0262', 'CGATCCTATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0263', 'TGACTAGCTT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0264', 'TAACTCTGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0265', 'TCGAATGTGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0266', 'TCGCTGAACA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0267', 'GCGTTATTGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0268', 'GAACTATCAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0269', 'TCGAGGTACT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0270', 'TGCGGATGGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0271', 'TTCGAGCTAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0272', 'GGTCTGGTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0273', 'CTAAGTCATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0274', 'TTGCAGATCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0275', 'CTGCGAATGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0276', 'CTGTTCTAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0277', 'CACTTGTGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0278', 'TGGATGACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0279', 'GATCCTGAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0280', 'GTCGGTCTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0281', 'TGTTACGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0282', 'GTCTTGGCTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0283', 'GGTCGTGCAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0284', 'CAGGCTCAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0285', 'TAGCTTCACT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0286', 'CAGATGTCCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0287', 'TTACGCAGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0288', 'TTCGTTCCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0289', 'CACTGCTTGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0290', 'TCTAGCGTGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0291', 'GCATAATCGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0292', 'GTCGTAACAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0293', 'GAGATTGCTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0294', 'GGACAGATGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0295', 'CTTACGTTGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0296', 'GTGTTCGGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0297', 'CTCAAGAAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0298', 'TCTCGGATAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0299', 'CTCTGGACGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0300', 'CGAGCATTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0301', 'CCAAGAAGAA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0302', 'TCCTTGTTCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0303', 'GTAACGATGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0304', 'TGGACTCAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0305', 'GGCATCATGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0306', 'GTATAACGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0307', 'GCAGATAAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0308', 'GTCGGCTCTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0309', 'TTCGATAGCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0310', 'GTCTAGCAGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0311', 'GGAACACAGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0312', 'TGGTTCGCTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0313', 'CACATTAGCG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0314', 'GAAGCGCACT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0315', 'GCATGCCAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0316', 'GGAGACTGTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0317', 'TCGAACTGCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0318', 'GAGAGGACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0319', 'GAGCACGGAA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0320', 'GCTCTAACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0321', 'TGCTGGCTTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0322', 'TGCATGGAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0323', 'GTACTAAGAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0324', 'GAAGTCAAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0325', 'GCGCATTATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0326', 'GTCCAGACAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0327', 'GAGACCTCTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0328', 'TTGCACTCAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0329', 'TGCGGCGATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0330', 'AGTTGCTAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0331', 'AGGATTGAGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0332', 'CCAGAACAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0333', 'CGTCAAGCAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0334', 'TTGTCGAGAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0335', 'GACAGGTGAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0336', 'CTGACAAGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0337', 'CACGAAGAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0338', 'CATACCTGAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0339', 'GACGTGCTTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0340', 'ATTGTGGAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0341', 'TCTGGTCTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0342', 'AGGTAAGAGG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0343', 'TCCTGACAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0344', 'GCACTGTTGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0345', 'ACCATGAGTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0346', 'AATGCAGTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0347', 'ATATGGTGGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0348', 'ACTCAGTTAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0349', 'AAGTGCGATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0350', 'CCACAGAGTG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0351', 'AGTGGTGATC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0352', 'ACTTCTTAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0353', 'GCCACATATA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0354', 'ACGCAGGAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0355', 'AATATGCTGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0356', 'AAGCGTAGAA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0357', 'GACAGCAAGC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0358', 'CTGACCGAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0359', 'CGCGACTTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0360', 'CATCAACATG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0361', 'TGGCTACGCT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0362', 'ACGCGGACTA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0363', 'AGAGGTCGGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0364', 'AATCGAGCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0365', 'AAGTACACTC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0366', 'AGCTGAATGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0367', 'ATGCCTATCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0368', 'ACTGTAGGAC', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0369', 'ATAGCCGTGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0370', 'TCACGACGAA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0371', 'ATCTGTCCAT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0372', 'ACTTAGAGAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0373', 'AGTGGCAGGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0374', 'ATGAGGTCGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0375', 'AGGAGAAGGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0376', 'ACAACTGCAA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0377', 'ATTAGCGAGT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0378', 'ACAACGAACA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0379', 'AGAGCGCCAA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0380', 'AGGTAGCTCA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0381', 'AACGCCAAGA', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0382', 'AAGGTATGAG', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0383', 'ATGGAGCACT', 'Fluidigm'); -INSERT into sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('FLD0384', 'ACGGTGCTAG', 'Fluidigm'); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.21-12.22.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.21-12.22.sql deleted file mode 100644 index a6dbc2aee..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.21-12.22.sql +++ /dev/null @@ -1,61 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -CREATE TABLE sequenceanalysis.alignment_summary ( - rowid INT IDENTITY(1,1), - analysis_id INTEGER, - file_id INTEGER, - total INTEGER, - total_forward INTEGER, - total_reverse INTEGER, - - container ENTITYID NOT NULL, - createdby INTEGER, - created DATETIME, - modifiedby INTEGER, - modified DATETIME, - - CONSTRAINT pk_alignment_summary PRIMARY KEY (rowid) -); - -ALTER TABLE sequenceanalysis.alignment_summary - ADD CONSTRAINT fk_alignment_summary_container FOREIGN KEY (container) - REFERENCES core.containers (entityid); - -ALTER TABLE sequenceanalysis.alignment_summary - ADD CONSTRAINT fk_alignment_summary_analysis_id FOREIGN KEY (analysis_id) - REFERENCES sequenceanalysis.sequence_analyses (rowid); - -CREATE TABLE sequenceanalysis.alignment_summary_junction ( - rowid INT IDENTITY(1,1), - analysis_id INTEGER, - alignment_id INTEGER, - ref_nt_id INTEGER, - status BIT, - - CONSTRAINT pk_alignment_summary_junction PRIMARY KEY (rowid) - -); - -ALTER TABLE sequenceanalysis.alignment_summary_junction - ADD CONSTRAINT fk_alignment_summary_junction_analysis_id FOREIGN KEY (analysis_id) - REFERENCES sequenceanalysis.sequence_analyses (rowid); - -alter table sequenceanalysis.ref_nt_sequences alter column createdby integer; -alter table sequenceanalysis.ref_nt_sequences alter column modifiedby integer; - ---these are the official illumina names -update sequenceanalysis.barcodes set tag_name = replace(tag_name, 'N50', 'S50') -where tag_name like 'N50%'; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.22-12.23.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.22-12.23.sql deleted file mode 100644 index 486b94849..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.22-12.23.sql +++ /dev/null @@ -1,42 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -insert into sequenceanalysis.illumina_templates (name, json, editable) -VALUES -('Nextera XT', '{' + - '"Header": [["Workflow","PCR Amplicon"],["Application","PCR Amplicon"],["Assay","Nextera XT"],["Chemistry","Amplicon"]],' + - '"Reads": [["251",""], ["251",""]],' + - '"Settings": [["Adapter","CTGTCTCTTATACACATCT"]]' + - '}', 1 -); - -ALTER TABLE sequenceanalysis.sequence_readsets add inputmaterial integer; - -create table sequenceanalysis.input_material ( - rowid INT IDENTITY(1,1), - name varchar(500) not null, - category varchar(100), - description varchar(4000), - - container ENTITYID, - createdBy USERID, - created DATETIME, - modifiedBy USERID, - modified DATETIME, - - constraint PK_input_materials PRIMARY KEY (rowid) -); - -delete from sequenceAnalysis.site_module_properties where prop_name = 'contactEmail'; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.23-12.24.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.23-12.24.sql deleted file mode 100644 index 66570ea3b..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.23-12.24.sql +++ /dev/null @@ -1,69 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -create table sequenceanalysis.nt_snps_by_pos ( - rowid INT IDENTITY(1,1) NOT NULL, - - analysis_id INTEGER, - ref_nt_id INTEGER, - ref_nt_name varchar(1000), - - ref_nt VARCHAR(3), - ref_nt_position INTEGER, - ref_nt_insert_index INTEGER, - - q_nt VARCHAR(3), - - readcount INTEGER, - depth INTEGER, - adj_depth INTEGER, - pct DOUBLE PRECISION, - - container ENTITYID, - createdBy INTEGER, - created DATETIME, - modifiedBy INTEGER, - modified DATETIME, - - constraint PK_nt_snps_by_pos PRIMARY KEY (rowid) -); - -create table sequenceanalysis.aa_snps_by_codon ( - rowid INT IDENTITY(1,1) NOT NULL, - - analysis_id INTEGER, - ref_nt_id INTEGER, - ref_aa_id INTEGER, - - ref_aa VARCHAR(3), - ref_aa_position INTEGER, - ref_aa_insert_index INTEGER, - - q_aa VARCHAR(3), - codon VARCHAR(10), - - readcount INTEGER, - depth INTEGER, - adj_depth INTEGER, - pct DOUBLE PRECISION, - - container ENTITYID, - createdBy INTEGER, - created DATETIME, - modifiedBy INTEGER, - modified DATETIME, - - constraint PK_aa_snps_by_codon PRIMARY KEY (rowid) -); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.24-12.25.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.24-12.25.sql deleted file mode 100644 index a417dede3..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.24-12.25.sql +++ /dev/null @@ -1,21 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -DROP TABLE sequenceanalysis.site_module_properties; -DROP TABLE sequenceanalysis.sbt_status; - -ALTER TABLE sequenceanalysis.haplotype_sequences add present bit; -ALTER TABLE sequenceanalysis.haplotype_sequences drop column ref_nt_id; -ALTER TABLE sequenceanalysis.haplotype_sequences add lineage varchar(100); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.25-12.26.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.25-12.26.sql deleted file mode 100644 index 8fd4f220c..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.25-12.26.sql +++ /dev/null @@ -1,23 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -ALTER TABLE sequenceanalysis.quality_metrics add analysis_id integer; - -ALTER TABLE sequenceanalysis.aa_snps_by_codon add ref_nt_positions varchar(200); - -INSERT into sequenceanalysis.quality_metrics_types (type) VALUES ('%Reads Aligned In Pairs'); -INSERT into sequenceanalysis.quality_metrics_types (type) VALUES ('Total Sequences Passed Filter'); -INSERT into sequenceanalysis.quality_metrics_types (type) VALUES ('Reads Aligned'); -INSERT into sequenceanalysis.quality_metrics_types (type) VALUES ('%Reads Aligned'); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.26-12.261.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.26-12.261.sql deleted file mode 100644 index bbadbdc43..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.26-12.261.sql +++ /dev/null @@ -1,215 +0,0 @@ --- delete from sequenceanalysis.aligners where name = 'mosaik'; --- insert into sequenceanalysis.aligners (haplotype,displayhaplotype,description,jsonconfig) values --- ('mosaik', 'Mosaik', 'Mosaik is suitable for longer reads and has the option to retain multiple hits per read. The only downside is that it can be slower. When this pipeline was first written, this aligner was preferred for sequence-based genotyping and similar applications which require retaining multiple hits. It supports paired end reads. The aligner is still good; however, Lastz also seems to perform well for SBT.', '[{"xtype":"hidden","name":"pairedEnd","value":"1"},{"name":"mosaik.output_multiple","fieldLabel":"Retain All Hits","xtype":"checkbox","renderData":{"helpPopup":"If selected, all hits above thresholds will be reported. If not, only a single hit will be retained."},"checked":1},{"name":"mosaik.max_mismatch_pct","fieldLabel":"Max Mismatch Pct","renderData":{"helpPopup":"The maximum percent of bases allowed to mismatch per alignment. Note: Ns are counted as mismatches"},"value":0.02,"minValue":0,"maxValue":1},{"name":"mosaik.hash_size","fieldLabel":"Hash Size","renderData":{"helpPopup":"The hash size used in alignment (see Mosaik documentation). A large value is preferred for sequences expected to be highly similar to the reference"},"minValue":0,"value":32},{"name":"mosaik.local_alignment","fieldLabel":"Local Alignment Radius","renderData":{"helpPopup":"This option is only used for paired end data. If a value is supplied, a local alignment will be performed around paired end reads in order to attempt to rescue mates"},"minValue":0},{"name":"mosaik.max_hash_positions","fieldLabel":"Max Hash Positions","renderData":{"helpPopup":"The maximum number of hash matches that are passed to local alignment."},"minValue":0,"value":200},{"name":"mosaik.align_threshold","fieldLabel":"Alignment Threshold","renderData":{"helpPopup":"The alignment score required for an alignment to continue to local alignment. Because the latter is slow, a higher value can improve speed."},"value":55}]'); - -INSERT INTO sequenceanalysis.haplotype_types (type) VALUES ('MHC-IA'); -INSERT INTO sequenceanalysis.haplotype_types (type) VALUES ('MHC-IB'); -INSERT INTO sequenceanalysis.haplotype_types (type) VALUES ('MHC-II'); - -ALTER table sequenceanalysis.haplotype_sequences DROP column haplotypeid; -ALTER table sequenceanalysis.haplotype_sequences ADD haplotype varchar(100); -ALTER table sequenceanalysis.haplotype_sequences ADD required bit; -GO -UPDATE sequenceanalysis.haplotype_sequences SET required = 1; - - -TRUNCATE TABLE sequenceanalysis.haplotypes; -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A001', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A002a', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A003', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A004', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A006', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A007', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A008', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A011', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A012', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A019', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A023', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A025', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A026', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A028', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('A224a', 'MHC-IA'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B001a', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B002', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B008', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B012a', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B012b', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B015a', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B015b', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B015c', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B017a', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B017c', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B024a', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B028', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B043a', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B043b', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B047a', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B048', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B055', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B069a', 'MHC-IB'); -INSERT INTO sequenceanalysis.haplotypes (name,type) VALUES ('B069b', 'MHC-IB'); - -TRUNCATE table sequenceanalysis.haplotype_sequences; -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A001', 'Mamu-A1*001g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A001', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A002a', 'Mamu-A1*002g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A002a', 'Mamu-A3*13g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A003', 'Mamu-A1*003g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A003', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A003', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A004', 'Mamu-A1*004g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A004', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A006', 'Mamu-A1*006g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A006', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A006', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A007', 'Mamu-A1*007g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A007', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A007', 'Mamu-A6*01g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A008', 'Mamu-A1*008g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A008', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A008', 'Mamu-A3*13g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A011', 'Mamu-A1*011g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A011', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A011', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A011', 'Mamu-A6*01g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A012', 'Mamu-A1*012g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A012', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A012', 'Mamu-A6*01g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A019', 'Mamu-A1*019g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A019', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A019', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A023', 'Mamu-A1*023g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A023', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A025', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A025', 'Mamu-A3*13g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A025', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A026', 'Mamu-A1*026g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A026', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A026', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A028', 'Mamu-A1*028g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A028', 'Mamu-A2*05g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A028', 'Mamu-A4*14g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A224a', 'Mamu-A2*24g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A224a', 'Mamu-A1*003g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('A224a', 'Mamu-A3*13g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B001a', 'Mamu-B*001g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B001a', 'Mamu-B*007g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B001a', 'Mamu-B*030g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B001a', 'Mamu-B*057g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B001a', 'Mamu-B*060g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B001a', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B002', 'Mamu-B*002g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B002', 'Mamu-B*070g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B002', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B002', 'Mamu-B*088g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B002', 'Mamu-B*098g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B008', 'Mamu-B*008g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B008', 'Mamu-B*006g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B008', 'Mamu-B*051g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B008', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B008', 'Mamu-B*079g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*012g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*082g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*030g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*038g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*046g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*049g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*053g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*057g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*070g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*074g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012a', 'Mamu-B*098g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*012g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*022g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*030g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*031g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*046g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*049g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*053g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*057g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*070g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*074g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B012b', 'Mamu-B*098g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015a', 'Mamu-B*015g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015a', 'Mamu-B*005g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015a', 'Mamu-B*044g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015a', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015b', 'Mamu-B*015g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015b', 'Mamu-B*068g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015b', 'Mamu-B*051g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015b', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015b', 'Mamu-B*079g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015c', 'Mamu-B*015g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015c', 'Mamu-B*068g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015c', 'Mamu-B*031g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015c', 'Mamu-B*051g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B015c', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017a', 'Mamu-B*017g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017a', 'Mamu-B*029g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017a', 'Mamu-B*068g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017a', 'Mamu-B*060g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017a', 'Mamu-B*061g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017a', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017c', 'Mamu-B*017g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017c', 'Mamu-B*001g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017c', 'Mamu-B*007g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017c', 'Mamu-B*030g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017c', 'Mamu-B*046g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017c', 'Mamu-B*060g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B017c', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B024a', 'Mamu-B*024g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B024a', 'Mamu-B*019g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B024a', 'Mamu-B*046g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B024a', 'Mamu-B*051g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B024a', 'Mamu-B*057g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B024a', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B024a', 'Mamu-B*082g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B028', 'Mamu-B*028g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B028', 'Mamu-B*021g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B028', 'Mamu-B*068g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B028', 'Mamu-B*124g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B028', 'Mamu-B*045g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B028', 'Mamu-B*046g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B028', 'Mamu-B*082g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043a', 'Mamu-B*043g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043a', 'Mamu-B*027g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043a', 'Mamu-B*030g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043a', 'Mamu-B*057g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043a', 'Mamu-B*060g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043a', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043a', 'Mamu-B*092g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043a', 'Mamu-B*098g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043b', 'Mamu-B*043g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043b', 'Mamu-B*030g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043b', 'Mamu-B*031g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043b', 'Mamu-B*073g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043b', 'Mamu-B*057g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043b', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B043b', 'Mamu-B*092g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B047a', 'Mamu-B*047g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B047a', 'Mamu-B*082g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B047a', 'Mamu-B*038g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B047a', 'Mamu-B*046g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B047a', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B048', 'Mamu-B*048g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B048', 'Mamu-B*041g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B048', 'Mamu-B*064g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B048', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B048', 'Mamu-B*134g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B055', 'Mamu-B*055g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B055', 'Mamu-B*052g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B055', 'Mamu-B*055g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B055', 'Mamu-B*072g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069a', 'Mamu-B*069g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069a', 'Mamu-B*065g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069a', 'Mamu-B*046g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069a', 'Mamu-B*050g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069a', 'Mamu-B*070g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069a', 'Mamu-B*100g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*069g', 1); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*068g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*075g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*046g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*060g', 0); -INSERT INTO sequenceanalysis.haplotype_sequences (haplotype,lineage,required) VALUES ('B069b', 'Mamu-B*072g', 0); -UPDATE sequenceanalysis.haplotype_sequences SET present = 1; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.261-12.262.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.261-12.262.sql deleted file mode 100644 index 994ae735c..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.261-12.262.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER table sequenceanalysis.alignment_summary ADD valid_pairs integer; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.262-12.263.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.262-12.263.sql deleted file mode 100644 index 342b027a3..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.262-12.263.sql +++ /dev/null @@ -1,300 +0,0 @@ ---update barcodes to pad to 3 digits -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID001' WHERE barcode5 = 'MID01'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID002' WHERE barcode5 = 'MID02'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID003' WHERE barcode5 = 'MID03'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID004' WHERE barcode5 = 'MID04'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID005' WHERE barcode5 = 'MID05'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID006' WHERE barcode5 = 'MID06'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID007' WHERE barcode5 = 'MID07'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID008' WHERE barcode5 = 'MID08'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID009' WHERE barcode5 = 'MID09'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID010' WHERE barcode5 = 'MID10'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID011' WHERE barcode5 = 'MID11'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID012' WHERE barcode5 = 'MID12'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID013' WHERE barcode5 = 'MID13'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID014' WHERE barcode5 = 'MID14'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID015' WHERE barcode5 = 'MID15'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID016' WHERE barcode5 = 'MID16'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID017' WHERE barcode5 = 'MID17'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID018' WHERE barcode5 = 'MID18'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID019' WHERE barcode5 = 'MID19'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID020' WHERE barcode5 = 'MID20'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID021' WHERE barcode5 = 'MID21'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID022' WHERE barcode5 = 'MID22'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID023' WHERE barcode5 = 'MID23'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID024' WHERE barcode5 = 'MID24'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID025' WHERE barcode5 = 'MID25'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID026' WHERE barcode5 = 'MID26'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID027' WHERE barcode5 = 'MID27'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID028' WHERE barcode5 = 'MID28'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID029' WHERE barcode5 = 'MID29'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID030' WHERE barcode5 = 'MID30'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID031' WHERE barcode5 = 'MID31'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID032' WHERE barcode5 = 'MID32'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID033' WHERE barcode5 = 'MID33'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID034' WHERE barcode5 = 'MID34'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID035' WHERE barcode5 = 'MID35'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID036' WHERE barcode5 = 'MID36'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID037' WHERE barcode5 = 'MID37'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID038' WHERE barcode5 = 'MID38'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID039' WHERE barcode5 = 'MID39'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID040' WHERE barcode5 = 'MID40'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID041' WHERE barcode5 = 'MID41'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID042' WHERE barcode5 = 'MID42'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID043' WHERE barcode5 = 'MID43'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID044' WHERE barcode5 = 'MID44'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID045' WHERE barcode5 = 'MID45'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID046' WHERE barcode5 = 'MID46'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID047' WHERE barcode5 = 'MID47'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID048' WHERE barcode5 = 'MID48'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID049' WHERE barcode5 = 'MID49'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID050' WHERE barcode5 = 'MID50'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID051' WHERE barcode5 = 'MID51'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID052' WHERE barcode5 = 'MID52'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID053' WHERE barcode5 = 'MID53'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID054' WHERE barcode5 = 'MID54'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID055' WHERE barcode5 = 'MID55'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID056' WHERE barcode5 = 'MID56'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID057' WHERE barcode5 = 'MID57'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID058' WHERE barcode5 = 'MID58'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID059' WHERE barcode5 = 'MID59'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID060' WHERE barcode5 = 'MID60'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID061' WHERE barcode5 = 'MID61'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID062' WHERE barcode5 = 'MID62'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID063' WHERE barcode5 = 'MID63'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID064' WHERE barcode5 = 'MID64'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID065' WHERE barcode5 = 'MID65'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID066' WHERE barcode5 = 'MID66'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID067' WHERE barcode5 = 'MID67'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID068' WHERE barcode5 = 'MID68'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID069' WHERE barcode5 = 'MID69'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID070' WHERE barcode5 = 'MID70'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID071' WHERE barcode5 = 'MID71'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID072' WHERE barcode5 = 'MID72'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID073' WHERE barcode5 = 'MID73'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID074' WHERE barcode5 = 'MID74'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID075' WHERE barcode5 = 'MID75'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID076' WHERE barcode5 = 'MID76'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID077' WHERE barcode5 = 'MID77'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID078' WHERE barcode5 = 'MID78'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID079' WHERE barcode5 = 'MID79'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID080' WHERE barcode5 = 'MID80'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID081' WHERE barcode5 = 'MID81'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID082' WHERE barcode5 = 'MID82'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID083' WHERE barcode5 = 'MID83'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID084' WHERE barcode5 = 'MID84'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID085' WHERE barcode5 = 'MID85'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID086' WHERE barcode5 = 'MID86'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID087' WHERE barcode5 = 'MID87'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID088' WHERE barcode5 = 'MID88'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID089' WHERE barcode5 = 'MID89'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID090' WHERE barcode5 = 'MID90'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID091' WHERE barcode5 = 'MID91'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID092' WHERE barcode5 = 'MID92'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID093' WHERE barcode5 = 'MID93'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID094' WHERE barcode5 = 'MID94'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID095' WHERE barcode5 = 'MID95'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID096' WHERE barcode5 = 'MID96'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID097' WHERE barcode5 = 'MID97'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID098' WHERE barcode5 = 'MID98'; -UPDATE sequenceanalysis.sequence_readsets SET barcode5 = 'MID099' WHERE barcode5 = 'MID99'; - -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID001' WHERE barcode3 = 'MID01'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID002' WHERE barcode3 = 'MID02'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID003' WHERE barcode3 = 'MID03'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID004' WHERE barcode3 = 'MID04'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID005' WHERE barcode3 = 'MID05'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID006' WHERE barcode3 = 'MID06'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID007' WHERE barcode3 = 'MID07'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID008' WHERE barcode3 = 'MID08'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID009' WHERE barcode3 = 'MID09'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID010' WHERE barcode3 = 'MID10'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID011' WHERE barcode3 = 'MID11'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID012' WHERE barcode3 = 'MID12'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID013' WHERE barcode3 = 'MID13'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID014' WHERE barcode3 = 'MID14'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID015' WHERE barcode3 = 'MID15'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID016' WHERE barcode3 = 'MID16'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID017' WHERE barcode3 = 'MID17'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID018' WHERE barcode3 = 'MID18'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID019' WHERE barcode3 = 'MID19'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID020' WHERE barcode3 = 'MID20'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID021' WHERE barcode3 = 'MID21'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID022' WHERE barcode3 = 'MID22'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID023' WHERE barcode3 = 'MID23'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID024' WHERE barcode3 = 'MID24'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID025' WHERE barcode3 = 'MID25'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID026' WHERE barcode3 = 'MID26'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID027' WHERE barcode3 = 'MID27'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID028' WHERE barcode3 = 'MID28'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID029' WHERE barcode3 = 'MID29'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID030' WHERE barcode3 = 'MID30'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID031' WHERE barcode3 = 'MID31'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID032' WHERE barcode3 = 'MID32'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID033' WHERE barcode3 = 'MID33'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID034' WHERE barcode3 = 'MID34'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID035' WHERE barcode3 = 'MID35'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID036' WHERE barcode3 = 'MID36'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID037' WHERE barcode3 = 'MID37'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID038' WHERE barcode3 = 'MID38'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID039' WHERE barcode3 = 'MID39'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID040' WHERE barcode3 = 'MID40'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID041' WHERE barcode3 = 'MID41'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID042' WHERE barcode3 = 'MID42'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID043' WHERE barcode3 = 'MID43'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID044' WHERE barcode3 = 'MID44'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID045' WHERE barcode3 = 'MID45'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID046' WHERE barcode3 = 'MID46'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID047' WHERE barcode3 = 'MID47'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID048' WHERE barcode3 = 'MID48'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID049' WHERE barcode3 = 'MID49'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID050' WHERE barcode3 = 'MID50'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID051' WHERE barcode3 = 'MID51'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID052' WHERE barcode3 = 'MID52'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID053' WHERE barcode3 = 'MID53'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID054' WHERE barcode3 = 'MID54'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID055' WHERE barcode3 = 'MID55'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID056' WHERE barcode3 = 'MID56'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID057' WHERE barcode3 = 'MID57'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID058' WHERE barcode3 = 'MID58'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID059' WHERE barcode3 = 'MID59'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID060' WHERE barcode3 = 'MID60'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID061' WHERE barcode3 = 'MID61'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID062' WHERE barcode3 = 'MID62'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID063' WHERE barcode3 = 'MID63'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID064' WHERE barcode3 = 'MID64'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID065' WHERE barcode3 = 'MID65'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID066' WHERE barcode3 = 'MID66'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID067' WHERE barcode3 = 'MID67'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID068' WHERE barcode3 = 'MID68'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID069' WHERE barcode3 = 'MID69'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID070' WHERE barcode3 = 'MID70'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID071' WHERE barcode3 = 'MID71'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID072' WHERE barcode3 = 'MID72'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID073' WHERE barcode3 = 'MID73'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID074' WHERE barcode3 = 'MID74'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID075' WHERE barcode3 = 'MID75'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID076' WHERE barcode3 = 'MID76'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID077' WHERE barcode3 = 'MID77'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID078' WHERE barcode3 = 'MID78'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID079' WHERE barcode3 = 'MID79'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID080' WHERE barcode3 = 'MID80'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID081' WHERE barcode3 = 'MID81'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID082' WHERE barcode3 = 'MID82'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID083' WHERE barcode3 = 'MID83'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID084' WHERE barcode3 = 'MID84'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID085' WHERE barcode3 = 'MID85'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID086' WHERE barcode3 = 'MID86'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID087' WHERE barcode3 = 'MID87'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID088' WHERE barcode3 = 'MID88'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID089' WHERE barcode3 = 'MID89'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID090' WHERE barcode3 = 'MID90'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID091' WHERE barcode3 = 'MID91'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID092' WHERE barcode3 = 'MID92'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID093' WHERE barcode3 = 'MID93'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID094' WHERE barcode3 = 'MID94'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID095' WHERE barcode3 = 'MID95'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID096' WHERE barcode3 = 'MID96'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID097' WHERE barcode3 = 'MID97'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID098' WHERE barcode3 = 'MID98'; -UPDATE sequenceanalysis.sequence_readsets SET barcode3 = 'MID099' WHERE barcode3 = 'MID99'; - -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID001' WHERE tag_name = 'MID01'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID002' WHERE tag_name = 'MID02'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID003' WHERE tag_name = 'MID03'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID004' WHERE tag_name = 'MID04'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID005' WHERE tag_name = 'MID05'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID006' WHERE tag_name = 'MID06'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID007' WHERE tag_name = 'MID07'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID008' WHERE tag_name = 'MID08'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID009' WHERE tag_name = 'MID09'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID010' WHERE tag_name = 'MID10'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID011' WHERE tag_name = 'MID11'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID012' WHERE tag_name = 'MID12'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID013' WHERE tag_name = 'MID13'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID014' WHERE tag_name = 'MID14'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID015' WHERE tag_name = 'MID15'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID016' WHERE tag_name = 'MID16'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID017' WHERE tag_name = 'MID17'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID018' WHERE tag_name = 'MID18'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID019' WHERE tag_name = 'MID19'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID020' WHERE tag_name = 'MID20'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID021' WHERE tag_name = 'MID21'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID022' WHERE tag_name = 'MID22'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID023' WHERE tag_name = 'MID23'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID024' WHERE tag_name = 'MID24'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID025' WHERE tag_name = 'MID25'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID026' WHERE tag_name = 'MID26'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID027' WHERE tag_name = 'MID27'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID028' WHERE tag_name = 'MID28'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID029' WHERE tag_name = 'MID29'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID030' WHERE tag_name = 'MID30'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID031' WHERE tag_name = 'MID31'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID032' WHERE tag_name = 'MID32'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID033' WHERE tag_name = 'MID33'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID034' WHERE tag_name = 'MID34'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID035' WHERE tag_name = 'MID35'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID036' WHERE tag_name = 'MID36'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID037' WHERE tag_name = 'MID37'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID038' WHERE tag_name = 'MID38'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID039' WHERE tag_name = 'MID39'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID040' WHERE tag_name = 'MID40'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID041' WHERE tag_name = 'MID41'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID042' WHERE tag_name = 'MID42'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID043' WHERE tag_name = 'MID43'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID044' WHERE tag_name = 'MID44'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID045' WHERE tag_name = 'MID45'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID046' WHERE tag_name = 'MID46'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID047' WHERE tag_name = 'MID47'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID048' WHERE tag_name = 'MID48'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID049' WHERE tag_name = 'MID49'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID050' WHERE tag_name = 'MID50'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID051' WHERE tag_name = 'MID51'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID052' WHERE tag_name = 'MID52'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID053' WHERE tag_name = 'MID53'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID054' WHERE tag_name = 'MID54'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID055' WHERE tag_name = 'MID55'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID056' WHERE tag_name = 'MID56'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID057' WHERE tag_name = 'MID57'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID058' WHERE tag_name = 'MID58'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID059' WHERE tag_name = 'MID59'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID060' WHERE tag_name = 'MID60'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID061' WHERE tag_name = 'MID61'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID062' WHERE tag_name = 'MID62'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID063' WHERE tag_name = 'MID63'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID064' WHERE tag_name = 'MID64'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID065' WHERE tag_name = 'MID65'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID066' WHERE tag_name = 'MID66'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID067' WHERE tag_name = 'MID67'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID068' WHERE tag_name = 'MID68'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID069' WHERE tag_name = 'MID69'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID070' WHERE tag_name = 'MID70'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID071' WHERE tag_name = 'MID71'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID072' WHERE tag_name = 'MID72'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID073' WHERE tag_name = 'MID73'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID074' WHERE tag_name = 'MID74'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID075' WHERE tag_name = 'MID75'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID076' WHERE tag_name = 'MID76'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID077' WHERE tag_name = 'MID77'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID078' WHERE tag_name = 'MID78'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID079' WHERE tag_name = 'MID79'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID080' WHERE tag_name = 'MID80'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID081' WHERE tag_name = 'MID81'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID082' WHERE tag_name = 'MID82'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID083' WHERE tag_name = 'MID83'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID084' WHERE tag_name = 'MID84'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID085' WHERE tag_name = 'MID85'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID086' WHERE tag_name = 'MID86'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID087' WHERE tag_name = 'MID87'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID088' WHERE tag_name = 'MID88'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID089' WHERE tag_name = 'MID89'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID090' WHERE tag_name = 'MID90'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID091' WHERE tag_name = 'MID91'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID092' WHERE tag_name = 'MID92'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID093' WHERE tag_name = 'MID93'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID094' WHERE tag_name = 'MID94'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID095' WHERE tag_name = 'MID95'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID096' WHERE tag_name = 'MID96'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID097' WHERE tag_name = 'MID97'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID098' WHERE tag_name = 'MID98'; -UPDATE sequenceanalysis.barcodes SET tag_name = 'MID099' WHERE tag_name = 'MID99'; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.263-12.264.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.263-12.264.sql deleted file mode 100644 index 382fee40c..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.263-12.264.sql +++ /dev/null @@ -1,3 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN inputMaterial; -DROP TABLE sequenceanalysis.input_material; -ALTER TABLE sequenceanalysis.sequence_readsets ADD inputMaterial varchar(1000); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.264-12.265.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.264-12.265.sql deleted file mode 100644 index 990ef8fe6..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.264-12.265.sql +++ /dev/null @@ -1 +0,0 @@ -UPDATE sequenceanalysis.aligners set name = 'bwasw' where name = 'bwa-sw'; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.265-12.266.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.265-12.266.sql deleted file mode 100644 index 51cc6bd99..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.265-12.266.sql +++ /dev/null @@ -1,56 +0,0 @@ -CREATE TABLE sequenceanalysis.illumina_applications ( - name varchar(200), - version integer, - workflowName varchar(200), - compatibleKits varchar(4000), - settings varchar(4000), - workflowParams varchar(4000), - json text, - - CONSTRAINT PK_illumina_applications PRIMARY KEY (name) -); - -DELETE FROM sequenceanalysis.illumina_applications; -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Assembly', 1, 'Assembly', 'TruSeq LT,Nextera XT,Nextera,TruSeq HT', '{"OptionalGenome":null}', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('ChIP-Seq', 1, 'GenerateFASTQ', 'TruSeq LT', '', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Clone Checking', 1, 'GenerateFASTQ', 'Nextera XT,Nextera,TruSeq HT,TruSeq LT', '', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Enrichment', 1, 'GenerateFASTQ', 'Nextera Enrichment', '', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('FASTQ Only', 1, 'GenerateFASTQ', 'TruSeq HT,TruSeq LT,Nextera XT,Nextera,Nextera Enrichment,Small RNA', '', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Library QC', 1, 'LibraryQC', 'TruSeq HT,TruSeq LT,Nextera XT,Nextera', '{"Genome":null}', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Metagenomics 16S rRNA', 1, 'Metagenomics', 'Nextera XT,Nextera,TruSeq HT,TruSeq LT', '', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('PCR Amplicon', 1, 'PCR Amplicon', 'Nextera XT,Nextera', '{"NexteraManifest":null}', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Resequencing', 1, 'Resequencing', 'TruSeq LT,TruSeq HT,Nextera,Nextera XT', '{"Genome":null}', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('RNA-Seq', 1, 'GenerateFASTQ', 'TruSeq LT,TruSeq HT', '', '', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('Small RNA', 1, 'SmallRNA', 'Small RNA', '', '[{"Label":"Genome Folder","Type":"GENOME","LabelInSampleSheet":"GenomeFolder","TrueVal":"-","FalseVal":"-","DefaultVal":"","Required":"FALSE","DisplayAsCol":"TRUE","DisplayEvenIfEmpty":"TRUE"},{"Label":"Contaminants","Type":"STRING","LabelInSampleSheet":"Contaminants","TrueVal":"-","FalseVal":"-","DefaultVal":"","Required":"TRUE","DisplayAsCol":"TRUE","DisplayEvenIfEmpty":"FALSE"},{"Label":"RNA","Type":"STRING","LabelInSampleSheet":"RNA","TrueVal":"-","FalseVal":"-","DefaultVal":"","Required":"TRUE","DisplayAsCol":"TRUE","DisplayEvenIfEmpty":"FALSE"},{"Label":"miRNA","Type":"STRING","LabelInSampleSheet":"miRNA","TrueVal":"-","FalseVal":"-","DefaultVal":"","Required":"TRUE","DisplayAsCol":"TRUE","DisplayEvenIfEmpty":"FALSE"}]', ''); -INSERT INTO sequenceanalysis.illumina_applications (name,version,workflowname,compatiblekits,settings,workflowparams,json) VALUES ('TruSeq Amplicon', 1, 'Amplicon', 'TruSeq Amplicon', '{"Genome":null,"Manifest":null,"NoCustomPrimers":null}', '[{"Label":"Use Somatic Variant Caller (Recommended for Cancer Panel)","Type":"BOOL","LabelInSampleSheet":"VariantCaller","TrueVal":"Somatic","FalseVal":"NULL","DefaultVal":"FALSE","Required":"FALSE","DisplayAsCol":"FALSE"}]', ''); - -CREATE TABLE sequenceanalysis.illumina_genome_folders ( - label varchar(200), - folder varchar(4000), - - CONSTRAINT PK_illumina_genome_folders PRIMARY KEY (label) -); - -CREATE TABLE sequenceanalysis.illumina_param_types ( - param varchar(200), - - CONSTRAINT PK_illumina_param_types PRIMARY KEY (param) -); - -CREATE TABLE sequenceanalysis.illumina_sample_kits ( - name varchar(200), - json text, - - CONSTRAINT PK_illumina_sample_kits PRIMARY KEY (name) -); - -DELETE FROM sequenceanalysis.illumina_sample_kits; -INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('Nextera', '{"Settings":[["NexteraManifest"],["Adapter","CTGTCTCTTATACACATCT"],["ManifestExtension","AmpliconManifest"]]}'); -INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('Nextera Enrichment', '{"Settings":[["Adapter","CTGTCTCTTATACACATCT"]]}'); -INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('Nextera XT', '{"Settings":[["NexteraManifest"],["Adapter","CTGTCTCTTATACACATCT"],["ManifestExtension","AmpliconManifest"]]}'); -INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('Small RNA', null); -INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('TruSeq Amplicon', '{"Settings":[["CAT"],["IndexOnly"],["PairedEndOnly"],["ManifestExtension","txt"]]}'); -INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('TruSeq HT', '{"Settings":[["Adapter","AGATCGGAAGAGCACACGTC"]]}'); -INSERT INTO sequenceanalysis.illumina_sample_kits (name,json) VALUES ('TruSeq LT', '{"Settings":[["Adapter","AGATCGGAAGAGCACACGTC"]]}'); - -DROP TABLE sequenceanalysis.illumina_templates; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.266-12.267.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.266-12.267.sql deleted file mode 100644 index 9aa365b43..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.266-12.267.sql +++ /dev/null @@ -1,2 +0,0 @@ ---force repeat on some team city agents -UPDATE sequenceanalysis.aligners set name = 'bwasw' where name = 'bwa-sw'; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.267-12.268.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.267-12.268.sql deleted file mode 100644 index 82db9352d..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.267-12.268.sql +++ /dev/null @@ -1,3 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_readsets ADD sampledate DATETIME; -ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN raw_input_file; -ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN raw_input_file2; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.268-12.269.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.268-12.269.sql deleted file mode 100644 index 464ebe228..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.268-12.269.sql +++ /dev/null @@ -1,2 +0,0 @@ -CREATE INDEX alignment_summary_analysis_id ON sequenceanalysis.alignment_summary (analysis_id); -CREATE INDEX alignment_summary_junction_analysis_id ON sequenceanalysis.alignment_summary_junction (analysis_id); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.269-12.270.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.269-12.270.sql deleted file mode 100644 index 29832fa34..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.269-12.270.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.ref_aa_sequences ADD isComplement bit; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.270-12.271.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.270-12.271.sql deleted file mode 100644 index 689f87995..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.270-12.271.sql +++ /dev/null @@ -1,4 +0,0 @@ -ALTER TABLE sequenceanalysis.nt_snps_by_pos ADD pvalue double precision; - -ALTER TABLE sequenceanalysis.sequence_analyses ADD synopsis varchar(4000); -ALTER TABLE sequenceanalysis.sequence_analyses ADD description varchar(4000); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.271-12.272.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.271-12.272.sql deleted file mode 100644 index e1fc50ec6..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.271-12.272.sql +++ /dev/null @@ -1,6 +0,0 @@ -CREATE INDEX IDX_alignment_summary_analysis_id_rowid_container ON sequenceanalysis.alignment_summary (analysis_id, rowid, container); - -CREATE INDEX IDX_alignment_summary_junction_ref_nt_id_status_alignment_id ON sequenceanalysis.alignment_summary_junction (ref_nt_id, status, alignment_id); -CREATE INDEX IDX_alignment_summary_junction_status_alignment_id ON sequenceanalysis.alignment_summary_junction (status, alignment_id); - -CREATE INDEX IDX_ref_nt_sequences_rowid_lineage ON sequenceanalysis.ref_nt_sequences (rowid, lineage); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.272-12.273.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.272-12.273.sql deleted file mode 100644 index b86b949a9..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.272-12.273.sql +++ /dev/null @@ -1,7 +0,0 @@ ---removed after monitoring site usage -DROP INDEX sequence_alignments_container ON sequenceanalysis.sequence_alignments; -DROP INDEX sequence_alignments_ref_nt_id ON sequenceanalysis.sequence_alignments; - -DROP INDEX sequence_coverage_container ON sequenceanalysis.sequence_coverage; - -DROP INDEX sequence_reads_container ON sequenceanalysis.sequence_reads; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.273-12.274.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.273-12.274.sql deleted file mode 100644 index 823756816..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.273-12.274.sql +++ /dev/null @@ -1 +0,0 @@ -DROP TABLE sequenceanalysis.aligners; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.274-12.275.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.274-12.275.sql deleted file mode 100644 index 122c32d88..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.274-12.275.sql +++ /dev/null @@ -1,10 +0,0 @@ -DROP INDEX aa_snps_ref_aa_position_codon ON sequenceanalysis.aa_snps; -DROP INDEX aa_snps_analysis_id ON sequenceanalysis.aa_snps; -DROP INDEX aa_snps_ref_nt_id ON sequenceanalysis.aa_snps; -DROP INDEX aa_snps_alignment_id ON sequenceanalysis.aa_snps; - -DROP INDEX alignment_summary_analysis_id ON sequenceanalysis.alignment_summary; - -DROP INDEX IDX_alignment_summary_junction_ref_nt_id_status_alignment_id ON sequenceanalysis.alignment_summary_junction; - -DROP INDEX sequence_coverage_ref_nt_id ON sequenceanalysis.sequence_coverage; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.275-12.276.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.275-12.276.sql deleted file mode 100644 index 78f7b9c27..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.275-12.276.sql +++ /dev/null @@ -1,65 +0,0 @@ -CREATE TABLE sequenceanalysis.reference_libraries ( - rowid int identity(1,1), - name varchar(200), - description varchar(4000), - - fasta_file int, - snps_file int, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_reference_libraries PRIMARY KEY (rowid) -); - -CREATE TABLE sequenceanalysis.reference_library_members ( - rowid int identity(1,1), - library_id int, - ref_nt_id int, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_reference_library_members PRIMARY KEY (rowid) -); - -CREATE TABLE sequenceanalysis.reference_library_tracks ( - rowid int identity(1,1), - name varchar(200), - description varchar(4000), - - library_id int, - fileid int, - type varchar(200), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_reference_library_tracks PRIMARY KEY (rowid) -); - -CREATE TABLE sequenceanalysis.saved_analyses ( - rowid int identity(1,1), - name varchar(200), - description varchar(4000), - - json varchar(4000), - originalAnalysisId int, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_saved_analyses PRIMARY KEY (rowid) -); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.276-12.277.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.276-12.277.sql deleted file mode 100644 index c82dd13e2..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.276-12.277.sql +++ /dev/null @@ -1,13 +0,0 @@ -CREATE TABLE sequenceanalysis.sequence_applications ( - application varchar(200), - - CONSTRAINT PK_sequence_applications PRIMARY KEY (application) -); - -ALTER TABLE sequenceanalysis.sequence_readsets add application varchar(200); - -GO -INSERT INTO sequenceanalysis.sequence_applications (application) values ('RNA-seq'); -INSERT INTO sequenceanalysis.sequence_applications (application) values ('DNA Sequencing (Genome)'); -INSERT INTO sequenceanalysis.sequence_applications (application) values ('DNA Sequencing (Amplicon)'); -INSERT INTO sequenceanalysis.sequence_applications (application) values ('Other'); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.277-12.278.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.277-12.278.sql deleted file mode 100644 index a9d3763b1..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.277-12.278.sql +++ /dev/null @@ -1,5 +0,0 @@ -ALTER TABLE sequenceanalysis.ref_nt_sequences ADD container entityid; -ALTER TABLE sequenceanalysis.ref_nt_sequences ADD sequenceFile int; -alter table sequenceanalysis.ref_nt_sequences alter column sequence text null; -go -UPDATE sequenceanalysis.ref_nt_sequences SET container = (select entityid from core.containers where name = 'Shared' and parent = (select entityid from core.containers where name is null)); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.278-12.279.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.278-12.279.sql deleted file mode 100644 index 2eec147e9..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.278-12.279.sql +++ /dev/null @@ -1,20 +0,0 @@ -EXEC core.executeJavaUpgradeCode 'migrateSequenceField'; - -ALTER TABLE sequenceanalysis.ref_nt_sequences DROP COLUMN sequence; - -declare @Command nvarchar(max) = ''; -select @Command = @Command + 'ALTER TABLE sequenceanalysis.ref_nt_sequences DROP CONSTRAINT ' + d.name -from sys.default_constraints d -where d.object_id = (SELECT constid FROM sysconstraints WHERE id=OBJECT_ID('sequenceanalysis.ref_nt_sequences') - AND COL_NAME(id,colid)='status' - AND OBJECTPROPERTY(constid, 'IsDefaultCnst')=1 - ); -execute(@Command); - -ALTER TABLE sequenceanalysis.ref_nt_sequences DROP COLUMN status; - -ALTER TABLE sequenceanalysis.nt_snps DROP CONSTRAINT fk_nt_snps_alignment; -DROP TABLE sequenceanalysis.sequence_reads; -DROP TABLE sequenceanalysis.sequence_alignments; -DROP TABLE sequenceanalysis.aa_snps; -DROP TABLE sequenceanalysis.nt_snps; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.279-12.280.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.279-12.280.sql deleted file mode 100644 index 38f365b60..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.279-12.280.sql +++ /dev/null @@ -1,3 +0,0 @@ -ALTER TABLE sequenceanalysis.reference_library_tracks ADD datedisabled datetime; -ALTER TABLE sequenceanalysis.reference_library_tracks ADD category varchar(200); -ALTER TABLE sequenceanalysis.reference_library_tracks DROP COLUMN type; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.280-12.281.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.280-12.281.sql deleted file mode 100644 index b65aeb914..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.280-12.281.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_analyses ADD library_id integer; -ALTER TABLE sequenceanalysis.sequence_analyses DROP COLUMN snpfile; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.281-12.282.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.281-12.282.sql deleted file mode 100644 index 57dc5572d..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.281-12.282.sql +++ /dev/null @@ -1,25 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_readsets ADD status VARCHAR(200); -ALTER TABLE sequenceanalysis.saved_analyses ADD taskid VARCHAR(1000); - -CREATE TABLE sequenceanalysis.outputfiles ( - rowid int identity(1,1), - name varchar(1000), - description varchar(4000), - dataid int, - library_id int, - readset int, - analysis_id int, - runid int, - category varchar(200), - intermediate bit, - container entityid NOT NULL, - createdby int, - created datetime, - modifiedby int, - modified datetime, - - CONSTRAINT PK_outputfiles PRIMARY KEY (rowid) -); - -alter table sequenceanalysis.reference_library_members add start int; -alter table sequenceanalysis.reference_library_members add stop int; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.282-12.283.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.282-12.283.sql deleted file mode 100644 index 0dcd6341d..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.282-12.283.sql +++ /dev/null @@ -1,12 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_readsets ADD sampletype VARCHAR(200); - -CREATE TABLE sequenceanalysis.input_material ( - material varchar(1000), - - CONSTRAINT PK_input_material PRIMARY KEY (material) -); - -INSERT INTO sequenceanalysis.input_material (material) VALUES ('gDNA'); -INSERT INTO sequenceanalysis.input_material (material) VALUES ('RNA'); - -DELETE FROM sequenceanalysis.sequence_applications WHERE application = 'Other'; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.283-12.284.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.283-12.284.sql deleted file mode 100644 index 35864f7e5..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.283-12.284.sql +++ /dev/null @@ -1,30 +0,0 @@ -declare @Command nvarchar(max) = ''; -select @Command = @Command + 'ALTER TABLE sequenceanalysis.sequence_analyses DROP CONSTRAINT ' + d.name -from sys.default_constraints d -where d.object_id = (SELECT constid FROM sysconstraints WHERE id=OBJECT_ID('sequenceanalysis.sequence_analyses') - AND COL_NAME(id,colid)='inputfile' - AND OBJECTPROPERTY(constid, 'IsDefaultCnst')=1 - ); -execute (@Command); - -declare @Command2 nvarchar(max) = ''; -select @Command2 = @Command2 + 'ALTER TABLE sequenceanalysis.sequence_analyses DROP CONSTRAINT ' + d.name -from sys.default_constraints d -where d.object_id = (SELECT constid FROM sysconstraints WHERE id=OBJECT_ID('sequenceanalysis.sequence_analyses') - AND COL_NAME(id,colid)='inputfile2' - AND OBJECTPROPERTY(constid, 'IsDefaultCnst')=1 - ); -execute (@Command2); - -declare @Command3 nvarchar(max) = ''; -select @Command3 = @Command3 + 'ALTER TABLE sequenceanalysis.sequence_analyses DROP CONSTRAINT ' + d.name -from sys.default_constraints d -where d.object_id = (SELECT constid FROM sysconstraints WHERE id=OBJECT_ID('sequenceanalysis.sequence_analyses') - AND COL_NAME(id,colid)='outputfile' - AND OBJECTPROPERTY(constid, 'IsDefaultCnst')=1 - ); -execute (@Command3); - -ALTER TABLE sequenceanalysis.sequence_analyses DROP COLUMN inputfile; -ALTER TABLE sequenceanalysis.sequence_analyses DROP COLUMN inputfile2; -ALTER TABLE sequenceanalysis.sequence_analyses DROP COLUMN outputfile; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.284-12.285.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.284-12.285.sql deleted file mode 100644 index 52a3b3743..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.284-12.285.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.quality_metrics ADD category varchar(200); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.285-12.286.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.285-12.286.sql deleted file mode 100644 index b5cf01e4a..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.285-12.286.sql +++ /dev/null @@ -1,9 +0,0 @@ -CREATE TABLE sequenceanalysis.readset_status ( - rowid int identity(1,1), - status varchar(100), - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int -); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.286-12.287.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.286-12.287.sql deleted file mode 100644 index 0a4339199..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.286-12.287.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.readset_status ADD CONSTRAINT PK_readset_status PRIMARY KEY (rowid); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.287-12.288.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.287-12.288.sql deleted file mode 100644 index 96ecbdb95..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.287-12.288.sql +++ /dev/null @@ -1,15 +0,0 @@ -CREATE TABLE sequenceanalysis.chain_files ( - rowid int identity(1,1), - genomeid1 int, - genomeid2 int, - chainfile int, - version double precision, - dateDisabled datetime, - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - constraint PK_chain_files PRIMARY KEY (rowid) -); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.288-12.289.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.288-12.289.sql deleted file mode 100644 index e97019e11..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.288-12.289.sql +++ /dev/null @@ -1,5 +0,0 @@ -DROP INDEX IDX_alignment_summary_junction_status_alignment_id ON sequenceanalysis.alignment_summary_junction; - -CREATE INDEX IDX_alignment_summary_junction_alignment_id_status ON sequenceanalysis.alignment_summary_junction (alignment_id, status); - ---ALTER TABLE sequenceanalyses.sequence_readsets ADD platform_unit varchar(100); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.289-12.290.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.289-12.290.sql deleted file mode 100644 index 109b0fb85..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.289-12.290.sql +++ /dev/null @@ -1,13 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_readsets ADD librarytype VARCHAR(200); - -CREATE TABLE sequenceanalysis.library_types ( - rowid int identity(1,1), - type varchar(100), - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - constraint PK_library_types PRIMARY KEY (rowid) -); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.290-12.291.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.290-12.291.sql deleted file mode 100644 index b74c3834d..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.290-12.291.sql +++ /dev/null @@ -1,12 +0,0 @@ -ALTER TABLE sequenceanalysis.reference_libraries DROP COLUMN snps_file; - -declare @Command nvarchar(max) = ''; -select @Command = @Command + 'ALTER TABLE sequenceanalysis.sequence_analyses DROP CONSTRAINT ' + d.name -from sys.default_constraints d -where d.object_id = (SELECT constid FROM sysconstraints WHERE id=OBJECT_ID('sequenceanalysis.sequence_analyses') - AND COL_NAME(id,colid)='makePublic' - AND OBJECTPROPERTY(constid, 'IsDefaultCnst')=1 - ); -execute(@Command); - -ALTER TABLE sequenceanalysis.sequence_analyses DROP COLUMN makePublic; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.291-12.292.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.291-12.292.sql deleted file mode 100644 index c97ba6ea7..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.291-12.292.sql +++ /dev/null @@ -1,16 +0,0 @@ -ALTER TABLE sequenceanalysis.barcodes DROP CONSTRAINT UNIQUE_barcodes; - -CREATE TABLE sequenceanalysis.genomeAliases ( - rowid int identity(1,1), - genomeId int, - externalDb varchar(100), - externalName varchar(1000), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_genomeAliases PRIMARY KEY (rowid) -); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.292-12.293.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.292-12.293.sql deleted file mode 100644 index dc5c9eda5..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.292-12.293.sql +++ /dev/null @@ -1,79 +0,0 @@ -EXEC core.executeJavaUpgradeCode 'migrateLibraryTracks'; - -CREATE TABLE sequenceanalysis.readData ( - rowid int identity(1,1), - readset int, - platformUnit varchar(200), - centerName varchar(200), - description varchar(4000), - date datetime, - fileid1 int, - fileid2 int, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_readData PRIMARY KEY (rowid) -); - -INSERT INTO sequenceanalysis.readData (readset,platformUnit,centerName,description,date,fileid1,fileid2,container,created,createdby,modified,modifiedby) -SELECT - rowid as readset, - CAST(rowid AS varchar) as platformUnit, - null as centerName, - null as description, - null as date, - fileid, - fileid2, - container, - created, - createdby, - modified, - modifiedby -FROM sequenceanalysis.sequence_readsets; - -ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN inputMaterial; -ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN fileid; -ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN fileid2; - - -DROP TABLE sequenceanalysis.input_material; - -CREATE TABLE sequenceanalysis.analysisSets ( - rowid int identity(1,1), - name int, - description varchar(4000), - category varchar(100), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_analysisSets PRIMARY KEY (rowid) -); - -CREATE TABLE sequenceanalysis.analysisSetMembers ( - rowid int identity(1,1), - analysisSet int, - dataId int, - groupName varchar(100), - description varchar(4000), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_analysisSetMembers PRIMARY KEY (rowid) -); - -ALTER TABLE sequenceanalysis.outputfiles drop column intermediate; - -INSERT INTO sequenceanalysis.sequence_applications (application) VALUES ('DNA Sequencing (Exome)'); -INSERT INTO sequenceanalysis.sequence_applications (application) VALUES ('DNA Sequencing (GBS)'); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.293-12.294.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.293-12.294.sql deleted file mode 100644 index b3e427096..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.293-12.294.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.quality_metrics DROP CONSTRAINT fk_quality_metrics_metricname; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.294-12.295.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.294-12.295.sql deleted file mode 100644 index c8c4b481e..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.294-12.295.sql +++ /dev/null @@ -1,5 +0,0 @@ -EXEC sp_rename 'sequenceanalysis.haplotype_sequences.lineage', 'name', 'COLUMN'; -GO -ALTER TABLE sequenceanalysis.haplotype_sequences ADD type VARCHAR(100); -GO -UPDATE sequenceanalysis.haplotype_sequences SET type = 'Lineage'; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.295-12.296.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.295-12.296.sql deleted file mode 100644 index 70c008323..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.295-12.296.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.reference_libraries ADD datedisabled datetime; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.296-12.297.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.296-12.297.sql deleted file mode 100644 index 40ca13b10..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.296-12.297.sql +++ /dev/null @@ -1,3 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_readsets ADD lsid LsidType; -ALTER TABLE sequenceanalysis.analysisSets ADD lsid LsidType; -ALTER TABLE sequenceanalysis.analysisSetMembers ADD lsid LsidType; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.297-12.298.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.297-12.298.sql deleted file mode 100644 index 770823314..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.297-12.298.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE sequenceanalysis.ref_nt_sequences ADD datedisabled datetime; -ALTER TABLE sequenceanalysis.ref_nt_sequences ADD disabledby varchar(1000); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.298-12.299.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.298-12.299.sql deleted file mode 100644 index e66d8e358..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.298-12.299.sql +++ /dev/null @@ -1,2 +0,0 @@ -DELETE FROM sequenceanalysis.readData -WHERE (SELECT c.entityId from core.containers c WHERE c.entityid = readData.container) IS NULL; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.299-12.300.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.299-12.300.sql deleted file mode 100644 index e288071cf..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.299-12.300.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.outputfiles ALTER COLUMN name VARCHAR(1000); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.300-12.301.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.300-12.301.sql deleted file mode 100644 index 7576b4c9f..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.300-12.301.sql +++ /dev/null @@ -1,11 +0,0 @@ -update sequenceanalysis.quality_metrics -set metricName = 'Avg Read Length' where metricName = 'Avg Sequence Length'; - -update sequenceanalysis.quality_metrics -set metricName = 'Min Read Length' where metricName = 'Min Sequence Length'; - -update sequenceanalysis.quality_metrics -set metricName = 'Max Read Length' where metricName = 'Max Sequence Length'; - -update sequenceanalysis.quality_metrics -set metricName = 'Total Reads' where metricName = 'Total Sequences'; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.301-12.302.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.301-12.302.sql deleted file mode 100644 index aa5a1237c..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.301-12.302.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE sequenceanalysis.haplotypes -ADD datedisabled DATETIME; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.302-12.303.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.302-12.303.sql deleted file mode 100644 index a7e0e4d72..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.302-12.303.sql +++ /dev/null @@ -1,13 +0,0 @@ -ALTER TABLE sequenceanalysis.alignment_summary_junction ADD createdby USERID; -ALTER TABLE sequenceanalysis.alignment_summary_junction ADD created DATETIME; -ALTER TABLE sequenceanalysis.alignment_summary_junction ADD modifiedby USERID; -ALTER TABLE sequenceanalysis.alignment_summary_junction ADD modified DATETIME; -GO - -update sequenceanalysis.alignment_summary_junction -set -created = (select created from sequenceanalysis.alignment_summary where alignment_summary.rowid = alignment_summary_junction.alignment_id), -modified = (select modified from sequenceanalysis.alignment_summary where alignment_summary.rowid = alignment_summary_junction.alignment_id), -createdby = (select createdby from sequenceanalysis.alignment_summary where alignment_summary.rowid = alignment_summary_junction.alignment_id), -modifiedby = (select modifiedby from sequenceanalysis.alignment_summary where alignment_summary.rowid = alignment_summary_junction.alignment_id) -; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.303-12.304.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.303-12.304.sql deleted file mode 100644 index bb0643f23..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.303-12.304.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.alignment_summary_junction ADD jobid integer; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.304-12.305.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.304-12.305.sql deleted file mode 100644 index fc9be11a8..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.304-12.305.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE sequenceanalysis.alignment_summary_junction DROP COLUMN jobid; -ALTER TABLE sequenceanalysis.ref_nt_sequences ADD jobid integer; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.305-12.306.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.305-12.306.sql deleted file mode 100644 index 38ff5f9f2..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.305-12.306.sql +++ /dev/null @@ -1,3 +0,0 @@ -ALTER TABLE sequenceanalysis.readdata ADD runid integer; -GO -UPDATE sequenceanalysis.readdata SET runid = (SELECT runid from sequenceanalysis.sequence_readsets WHERE sequence_readsets.rowid = readdata.readset); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.306-12.307.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.306-12.307.sql deleted file mode 100644 index aa7ddcf35..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.306-12.307.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE sequenceanalysis.reference_library_members ADD type VARCHAR(100); -ALTER TABLE sequenceanalysis.ref_nt_sequences ADD seqLength INTEGER; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.307-12.308.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.307-12.308.sql deleted file mode 100644 index a1b447b27..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.307-12.308.sql +++ /dev/null @@ -1 +0,0 @@ -EXEC core.executeJavaUpgradeCode 'appendSequenceLength'; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.308-12.309.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.308-12.309.sql deleted file mode 100644 index e63091c52..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.308-12.309.sql +++ /dev/null @@ -1,5 +0,0 @@ -ALTER TABLE sequenceanalysis.readdata ADD sra_accession VARCHAR(100); -ALTER TABLE sequenceanalysis.sequence_analyses ADD sra_accession VARCHAR(100); -ALTER TABLE sequenceanalysis.outputfiles ADD sra_accession VARCHAR(100); - -ALTER TABLE sequenceanalysis.reference_libraries ADD assemblyId VARCHAR(100); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.309-12.310.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.309-12.310.sql deleted file mode 100644 index 289005323..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.309-12.310.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.ref_nt_sequences ADD refSeqId VARCHAR(100); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.310-12.311.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.310-12.311.sql deleted file mode 100644 index 52d84c0ff..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.310-12.311.sql +++ /dev/null @@ -1,5 +0,0 @@ -ALTER TABLE sequenceanalysis.ref_nt_features ADD container ENTITYID; -ALTER TABLE sequenceanalysis.ref_aa_features ADD container ENTITYID; -GO -UPDATE sequenceanalysis.ref_nt_features SET container = (select container from sequenceanalysis.ref_nt_sequences WHERE ref_nt_sequences.rowid = ref_nt_features.ref_nt_id); -UPDATE sequenceanalysis.ref_aa_features SET container = (select container from sequenceanalysis.ref_nt_sequences WHERE ref_nt_sequences.rowid = ref_aa_features.ref_nt_id); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.311-12.312.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.311-12.312.sql deleted file mode 100644 index ea8b6a3ec..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.311-12.312.sql +++ /dev/null @@ -1,3 +0,0 @@ -ALTER TABLE sequenceanalysis.ref_aa_sequences ADD container ENTITYID; -GO -UPDATE sequenceanalysis.ref_aa_sequences SET container = (select container from sequenceanalysis.ref_nt_sequences WHERE ref_nt_sequences.rowid = ref_aa_sequences.ref_nt_id); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.312-12.313.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.312-12.313.sql deleted file mode 100644 index 5e318f41b..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.312-12.313.sql +++ /dev/null @@ -1,15 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_readsets ADD chemistry VARCHAR(1000); - -CREATE TABLE sequenceanalysis.sequence_chemistries ( - chemistry VARCHAR(100), - - CONSTRAINT PK_sequence_chemistries PRIMARY KEY (chemistry) -); -GO - -INSERT INTO sequenceanalysis.sequence_chemistries (chemistry) VALUES ('Illumina HiSeq3000'); -INSERT INTO sequenceanalysis.sequence_chemistries (chemistry) VALUES ('Illumina MiSeq 2x250'); -INSERT INTO sequenceanalysis.sequence_chemistries (chemistry) VALUES ('Illumina MiSeq 2x300'); -INSERT INTO sequenceanalysis.sequence_chemistries (chemistry) VALUES ('Illumina XTen'); -INSERT INTO sequenceanalysis.sequence_chemistries (chemistry) VALUES ('Illumina NextSeq MidOutput'); -INSERT INTO sequenceanalysis.sequence_chemistries (chemistry) VALUES ('Illumina NextSeq HighOutput'); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.313-12.314.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.313-12.314.sql deleted file mode 100644 index 07b91d5b4..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.313-12.314.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.reference_library_tracks ADD jobId integer; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.314-12.315.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.314-12.315.sql deleted file mode 100644 index b892e7cec..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.314-12.315.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE sequenceanalysis.haplotypes ADD color varchar(100); -ALTER TABLE sequenceanalysis.haplotype_types ADD sort_order int; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.315-12.316.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.315-12.316.sql deleted file mode 100644 index 6c70e3bde..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.315-12.316.sql +++ /dev/null @@ -1,4 +0,0 @@ -ALTER TABLE sequenceanalysis.analysisSetMembers ADD outputFileId int; - -ALTER TABLE sequenceanalysis.analysisSets DROP COLUMN name; -ALTER TABLE sequenceanalysis.analysisSets ADD name varchar(200); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.316-12.317.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.316-12.317.sql deleted file mode 100644 index 2b67e9b06..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.316-12.317.sql +++ /dev/null @@ -1,12 +0,0 @@ -ALTER TABLE sequenceanalysis.instrument_runs ADD facility varchar(500); -ALTER TABLE sequenceanalysis.instrument_runs ADD lane varchar(500); -ALTER TABLE sequenceanalysis.instrument_runs ADD instrumentType varchar(500); - -ALTER TABLE sequenceanalysis.instrument_runs DROP COLUMN instrumentid; - -ALTER TABLE sequenceanalysis.saved_analyses ALTER COLUMN json text; - -INSERT into sequenceanalysis.instruments (displayname, platform) VALUES ('MiSeq', 'ILLUMINA'); -INSERT into sequenceanalysis.instruments (displayname, platform) VALUES ('HiSeq3000', 'ILLUMINA'); -INSERT into sequenceanalysis.instruments (displayname, platform) VALUES ('HiSeq2500', 'ILLUMINA'); -INSERT into sequenceanalysis.instruments (displayname, platform) VALUES ('NovaSeq', 'ILLUMINA'); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.317-12.318.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.317-12.318.sql deleted file mode 100644 index 28764303c..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.317-12.318.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE sequenceanalysis.sequence_readsets ADD concentration double precision; -ALTER TABLE sequenceanalysis.sequence_readsets ADD fragmentSize double precision; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.318-12.319.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.318-12.319.sql deleted file mode 100644 index 57f7055dc..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.318-12.319.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE sequenceanalysis.instruments ADD i7IndexComplement bit; -ALTER TABLE sequenceanalysis.instruments ADD i5IndexComplement bit; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.319-12.320.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.319-12.320.sql deleted file mode 100644 index 10c5ab5ea..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.319-12.320.sql +++ /dev/null @@ -1,4 +0,0 @@ -ALTER TABLE sequenceanalysis.barcodes ADD reverse_complement varchar(4000); -ALTER TABLE sequenceanalysis.readdata ADD archived bit default 0; -GO -UPDATE sequenceanalysis.readdata SET archived = 0; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.320-12.321.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.320-12.321.sql deleted file mode 100644 index 35a668bc8..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.320-12.321.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.chain_files ADD source varchar(4000); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.321-12.322.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.321-12.322.sql deleted file mode 100644 index 23c2b1f41..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.321-12.322.sql +++ /dev/null @@ -1 +0,0 @@ -EXEC core.executeJavaUpgradeCode 'updateBarcodeRC'; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.322-12.323.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.322-12.323.sql deleted file mode 100644 index 02ef42fd0..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.322-12.323.sql +++ /dev/null @@ -1,20 +0,0 @@ -UPDATE sequenceanalysis.quality_metrics SET metricname = 'Mean Read Length' WHERE metricname = 'Avg Read Length'; - -UPDATE sequenceanalysis.quality_metrics SET category = 'Readset' WHERE category IS NULL and metricname IN ( - 'Total Reads', - 'Min Read Length', - 'Max Read Length', - 'Mean Read Length', - 'Total Bases', - 'Total MBases', - 'Total GBases', - 'Total Q10 Bases', - 'Total Q20 Bases', - 'Total Q30 Bases', - 'Total Q40 Bases', - 'Pct Q10', - 'Pct Q20', - 'Pct Q30', - 'Pct Q40' -); - diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.323-12.324.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.323-12.324.sql deleted file mode 100644 index b6800d5a6..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.323-12.324.sql +++ /dev/null @@ -1,18 +0,0 @@ --- find constraint name -declare @name nvarchar(32), - @sql nvarchar(1000) - -select @name = O.name -from sys.default_constraints O -where parent_object_id = object_id('sequenceanalysis.sequence_readsets') - AND type = 'D' - and O.name like '%comme%' - --- delete if found -if not @name is null -begin -select @sql = 'ALTER TABLE sequenceanalysis.sequence_readsets DROP CONSTRAINT [' + @name + ']' - execute sp_executesql @sql -end - -ALTER TABLE sequenceanalysis.sequence_readsets ALTER COLUMN comments NVARCHAR(MAX); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.324-12.325.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.324-12.325.sql deleted file mode 100644 index 27d9abeb1..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.324-12.325.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.reference_library_members ADD alias VARCHAR(4000); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.325-12.326.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.325-12.326.sql deleted file mode 100644 index a850bf861..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.325-12.326.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE sequenceanalysis.aa_snps_by_codon ALTER column codon VARCHAR(4000); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.326-12.327.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.326-12.327.sql deleted file mode 100644 index 80a3a0594..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.326-12.327.sql +++ /dev/null @@ -1,6 +0,0 @@ -ALTER TABLE sequenceanalysis.aa_snps_by_codon ALTER column ref_aa VARCHAR(4000); -ALTER TABLE sequenceanalysis.aa_snps_by_codon ALTER column q_aa VARCHAR(4000); - -ALTER TABLE sequenceanalysis.nt_snps_by_pos ALTER column ref_nt VARCHAR(4000); -ALTER TABLE sequenceanalysis.nt_snps_by_pos ALTER column q_nt VARCHAR(4000); - diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.327-12.328.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.327-12.328.sql deleted file mode 100644 index b1d735080..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.327-12.328.sql +++ /dev/null @@ -1,4 +0,0 @@ -ALTER TABLE sequenceanalysis.alignment_summary_junction ADD container ENTITYID; -GO -UPDATE sequenceanalysis.alignment_summary_junction -SET container = (SELECT s.container FROM sequenceanalysis.alignment_summary s WHERE s.rowid = alignment_id); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.328-12.329.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.328-12.329.sql deleted file mode 100644 index ec8567cb0..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.328-12.329.sql +++ /dev/null @@ -1,19 +0,0 @@ -CREATE NONCLUSTERED INDEX IDX_asj_status_container_alignment_id_ref_nt_id ON sequenceanalysis.alignment_summary_junction ( - status ASC, - container ASC, - alignment_id ASC, - ref_nt_id ASC -); - -CREATE NONCLUSTERED INDEX IDX_readData_readset ON sequenceanalysis.readData ( - readset ASC -) -INCLUDE(fileid1, fileid2, runid); - -CREATE NONCLUSTERED INDEX IDX_quality_metrics_metricname_dataid_readset ON sequenceanalysis.quality_metrics ( - metricName ASC, - dataId ASC, - readset ASC -) -INCLUDE(metricValue); - diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.329-12.330.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.329-12.330.sql deleted file mode 100644 index a358c05e3..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.329-12.330.sql +++ /dev/null @@ -1,33 +0,0 @@ -CREATE NONCLUSTERED INDEX IDX_haplotypes_name_date ON sequenceanalysis.haplotypes -( - Name ASC, - datedisabled ASC -); - -CREATE NONCLUSTERED INDEX IDX_haplotype_sequences_name_haplotype_type ON sequenceanalysis.haplotype_sequences -( - haplotype ASC, - name ASC, - type ASC -); - -CREATE NONCLUSTERED INDEX IDX_alignment_summary_analysis_id_rowid_container_total ON sequenceanalysis.alignment_summary -( - analysis_id ASC, - rowid ASC, - container ASC -) -INCLUDE(total); - -CREATE STATISTICS STAT_ref_nt_sequence_rowid_locus_container ON sequenceanalysis.ref_nt_sequences (RowId, locus, container); - -CREATE STATISTICS STAT_ref_nt_sequence_locus_container ON sequenceanalysis.ref_nt_sequences (locus, container); - -CREATE STATISTICS STAT_sequence_analyses_container_readset ON sequenceanalysis.sequence_analyses (Container, readset); - -CREATE STATISTICS STAT_sequence_readsets_rowid_container ON sequenceanalysis.sequence_readsets (RowId, Container); - -CREATE STATISTICS STAT_asj_alignmentid_container_ref_nt_id ON sequenceanalysis.alignment_summary_junction (alignment_id, container, ref_nt_id); - -CREATE STATISTICS STAT_asj_alignmentid_ref_nt_id_status_alignment_id ON sequenceanalysis.alignment_summary_junction (ref_nt_id, status, alignment_id); - diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.330-12.331.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.330-12.331.sql deleted file mode 100644 index b124ca0dc..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.330-12.331.sql +++ /dev/null @@ -1,5 +0,0 @@ --- This is a reversal of SequenceAnalysis-12.329-12.330.sql: -DROP INDEX IDX_asj_status_container_alignment_id_ref_nt_id ON sequenceanalysis.alignment_summary_junction; -DROP INDEX IDX_haplotypes_name_date ON sequenceanalysis.haplotypes; -DROP INDEX IDX_haplotype_sequences_name_haplotype_type ON sequenceanalysis.haplotype_sequences; -DROP INDEX IDX_alignment_summary_analysis_id_rowid_container_total ON sequenceanalysis.alignment_summary; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.331-12.332.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.331-12.332.sql deleted file mode 100644 index b24244d15..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.331-12.332.sql +++ /dev/null @@ -1 +0,0 @@ -EXEC core.executeJavaUpgradeCode 'migrateSequenceDirs'; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.23-11.24.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.23-11.24.sql deleted file mode 100644 index 8a5cdf064..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.23-11.24.sql +++ /dev/null @@ -1,2272 +0,0 @@ -/* - * Copyright (c) 2011-2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - - -/* SequenceAnalysis-0.00-0.10.sql */ - - -EXEC core.fn_dropifexists '*', 'sequenceanalysis', 'SCHEMA', NULL -GO -CREATE SCHEMA sequenceanalysis; -go - --- ---------------------------- --- Table structure for sequenceanalysis.module_properties --- ---------------------------- -EXEC core.fn_dropifexists 'module_properties', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.module_properties ( - RowId INT IDENTITY(1,1) NOT NULL, - - prop_name varchar(255) DEFAULT NULL, - stringvalue varchar(255) DEFAULT NULL, - floatvalue float DEFAULT NULL, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_module_properties PRIMARY KEY (rowId) -) -; - - --- ---------------------------- --- Table structure for sequenceanalysis.site_module_properties --- ---------------------------- -EXEC core.fn_dropifexists 'site_module_properties', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.site_module_properties ( - prop_name varchar(255) DEFAULT NULL, - stringvalue varchar(255) DEFAULT NULL, - floatvalue float DEFAULT NULL, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_site_module_properties PRIMARY KEY (prop_name) -) -; - --- ---------------------------- --- Table structure for sequenceanalysis.sequence_analyses --- ---------------------------- -EXEC core.fn_dropifexists 'sequence_analyses', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.sequence_analyses ( - RowId INT IDENTITY(1,1) NOT NULL, - - type varchar(255) DEFAULT NULL, - runId integer DEFAULT NULL, - sampleId integer DEFAULT NULL, - inputFile integer DEFAULT NULL, - outputFile integer DEFAULT NULL, - makePublic bit default 0, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_sequence_analyses PRIMARY KEY (rowId) -) -; - - --- ---------------------------- --- Table structure for sequenceanalysis.external_dbs --- ---------------------------- -EXEC core.fn_dropifexists 'external_dbs', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.external_dbs ( - RowId INT IDENTITY(1,1) NOT NULL, - - name varchar(255) DEFAULT NULL, - details varchar(255) DEFAULT NULL, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_external_dbs PRIMARY KEY (rowId) -) -; - - --- ---------------------------- --- Table structure for sequenceanalysis.barcodes --- ---------------------------- -EXEC core.fn_dropifexists 'barcodes', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.barcodes ( - tag_name varchar(255) NOT NULL, - sequence varchar(255) NOT NULL, - group_name varchar(255) DEFAULT NULL, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_barcodes PRIMARY KEY (tag_name), - CONSTRAINT UNIQUE_barcodes UNIQUE (sequence) -) -; - --- ---------------------------- --- Records of barcodes --- ---------------------------- -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID01', 'ACGAGTGCGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID02', 'ACGCTCGACA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID03', 'AGACGCACTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID04', 'AGCACTGTAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID05', 'ATCAGACACG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID06', 'ATATCGCGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID07', 'CGTGTCTCTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID08', 'CTCGCGTGTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID09', 'TAGTATCAGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID10', 'TCTCTATGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID11', 'TGATACGTCT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID12', 'TACTGAGCTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID13', 'CATAGTAGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID14', 'CGAGAGATAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID15', 'ATACGACGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID16', 'TCACGTACTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID17', 'CGTCTAGTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID18', 'TCTACGTAGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID19', 'TGTACTACTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID20', 'ACGACTACAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID21', 'CGTAGACTAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID22', 'TACGAGTATG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID23', 'TACTCTCGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID24', 'TAGAGACGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID25', 'TCGTCGCTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID26', 'ACATACGCGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID27', 'ACGCGAGTAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID28', 'ACTACTATGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID29', 'ACTGTACAGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID30', 'AGACTATACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID31', 'AGCGTCGTCT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID32', 'AGTACGCTAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID33', 'ATAGAGTACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID34', 'CACGCTACGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID35', 'CAGTAGACGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID36', 'CGACGTGACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID37', 'TACACACACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID38', 'TACACGTGAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID39', 'TACAGATCGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID40', 'TACGCTGTCT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID41', 'TAGTGTAGAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID42', 'TCGATCACGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID43', 'TCGCACTAGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID44', 'TCTAGCGACT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID45', 'TCTATACTAT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID46', 'TGACGTATGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID47', 'TGTGAGTAGT', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID48', 'ACAGTATATA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID49', 'ACGCGATCGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID50', 'ACTAGCAGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID51', 'AGCTCACGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID52', 'AGTATACATA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID53', 'AGTCGAGAGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID54', 'AGTGCTACGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID55', 'CGATCGTATA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID56', 'CGCAGTACGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID57', 'CGCGTATACA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID58', 'CGTACAGTCA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID59', 'CGTACTCAGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID60', 'CTACGCTCTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID61', 'CTATAGCGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID62', 'TACGTCATCA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID63', 'TAGTCGCATA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID64', 'TATATATACA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID65', 'TATGCTAGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID66', 'TCACGCGAGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID67', 'TCGATAGTGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID68', 'TCGCTGCGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID69', 'TCTGACGTCA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID70', 'TGAGTCAGTA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID71', 'TGTAGTGTGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID72', 'TGTCACACGA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID73', 'TGTCGTCGCA', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID74', 'ACACATACGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID75', 'ACAGTCGTGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID76', 'ACATGACGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID77', 'ACGACAGCTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID78', 'ACGTCTCATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID79', 'ACTCATCTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID80', 'ACTCGCGCAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID81', 'AGAGCGTCAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID82', 'AGCGACTAGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID83', 'AGTAGTGATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID84', 'AGTGACACAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID85', 'AGTGTATGTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID86', 'ATAGATAGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID87', 'ATATAGTCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID88', 'ATCTACTGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID89', 'CACGTAGATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID90', 'CACGTGTCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID91', 'CATACTCTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID92', 'CGACACTATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID93', 'CGAGACGCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID94', 'CGTATGCGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID95', 'CGTCGATCTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID96', 'CTACGACTGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID97', 'CTAGTCACTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID98', 'CTCTACGCTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID99', 'CTGTACATAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID100', 'TAGACTGCAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID101', 'TAGCGCGCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID102', 'TAGCTCTATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID103', 'TATAGACATC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID104', 'TATGATACGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID105', 'TCACTCATAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID106', 'TCATCGAGTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID107', 'TCGAGCTCTC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID108', 'TCGCAGACAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID109', 'TCTGTCTCGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID110', 'TGAGTGACGC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID111', 'TGATGTGTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID112', 'TGCTATAGAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID113', 'TGCTCGCTAC', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID114', 'ACGTGCAGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID115', 'ACTCACAGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID116', 'AGACTCAGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID117', 'AGAGAGTGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID118', 'AGCTATCGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID119', 'AGTCTGACTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID120', 'AGTGAGCTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID121', 'ATAGCTCTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID122', 'ATCACGTGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID123', 'ATCGTAGCAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID124', 'ATCGTCTGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID125', 'ATGTACGATG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID126', 'ATGTGTCTAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID127', 'CACACGATAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID128', 'CACTCGCACG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID129', 'CAGACGTCTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID130', 'CAGTACTGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID131', 'CGACAGCGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID132', 'CGATCTGTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID133', 'CGCGTGCTAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID134', 'CGCTCGAGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID135', 'CGTGATGACG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID136', 'CTATGTACAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID137', 'CTCGATATAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID138', 'CTCGCACGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID139', 'CTGCGTCACG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID140', 'CTGTGCGTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID141', 'TAGCATACTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID142', 'TATACATGTG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID143', 'TATCACTCAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID144', 'TATCTGATAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID145', 'TCGTGACATG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID146', 'TCTGATCGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID147', 'TGACATCTCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID148', 'TGAGCTAGAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID149', 'TGATAGAGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID150', 'TGCGTGTGCG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID151', 'TGCTAGTCAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID152', 'TGTATCACAG', 'GSMIDs'); -INSERT INTO sequenceanalysis.barcodes (tag_name, sequence, group_name) VALUES ('MID153', 'TGTGCGCGTG', 'GSMIDs'); - - --- ---------------------------- --- Table structure for sequenceAnalysis.ref_nt_sequences --- ---------------------------- -EXEC core.fn_dropifexists 'ref_nt_sequences', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.ref_nt_sequences ( -RowId INT IDENTITY(1,1) NOT NULL, - -name varchar(220), -sequence text NOT NULL, -category1 varchar(100), --aka Virus or DNA -category2 varchar(100), --aka Strain or DNA_Region -category3 varchar(100), --aka Locus -category4 varchar(100), --aka Lineage - -mol_type varchar(100), -genbank varchar(100), -ipd_accession varchar(100), -species varchar(100), -geographic_origin varchar(200), - -status bit DEFAULT 1, -comments text default null, - -CreatedBy USERID, -Created datetime, -ModifiedBy USERID, -Modified datetime, - -CONSTRAINT PK_ref_nt_sequences PRIMARY KEY (rowid) - -); - - --- ---------------------------- --- Data for sequenceAnalysis.ref_nt_sequences --- ---------------------------- -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac239', 'Virus', 'SIVmac239', 'RNA', 'SIV', 'GCATGCACATTTTAAAGGCTTTTGCTAAATATAGCCAAAAGTCCTTCTACAAATTTTCTAAGAGTTCTGATTCAAAGCAGTAACAGGCCTTGTCTCATCATGAACTTTGGCATTTCATCTACAGCTAAGTTTATATCATAAATAGTTCTTTACAGGCAGCACCAACTTATACCCTTATAGCATACTTTACTGTGTGAAAATTGCATCTTTCATTAAGCTTACTGTAAATTTACTGGCTGTCTTCCTTGCAGGTTTCTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCTATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTTTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAAGTGGCCCTTAATGTTACAGAAAGCTTTGATGCCTGGAATAATACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTGGTACTCTGCAGATTTGGTATGTGAACAAGGGAATAACACTGGTAATGAAAGTAGATGTTACATGAACCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAACATTATTGGGATGCTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTGACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATACAGCTAACCAGAAGCCAAAGGAACAGCATAAAAGGAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAAAGTGGAACAATGAGACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAAGAAAATATAACAGCCCTCCTAGAGGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAAGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGATCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACAGAGGATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGgAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac251', 'Virus', 'SIVmac251', 'RNA', 'SIV', 'TGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATGTACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGAGGCATTATTTAATGCAGCCAGCTCAAACTTCCAAGTGGGATGACCCTTGGGGAGAGGTTCTAGCGTGGAAGTTTGATCCAACTCTAGCCTACACTTATGAGGCATATGCTAGATACCCAGAAGAGTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAGGGAAACTCGCTGAGATAGCAGGGACTTTCCACAAGGGGATGTTATGGGGAGGAGCCGGTCGGGAACACCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCAGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCCAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCAACTCGGTACTCGGTAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGAGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCCGAACAGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAGGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTGTTATCCAGGAAGGGATAATAAGATAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCGGCGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAGCAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGCTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAATGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAGCTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGCTTAAGAGCAGAACAAACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGACCAGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAGAAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAGGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGACGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTATTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAAAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACTCCGATTAACATTTTTGGTAGGAATTTGCTAACAGCTCTGGGGATGTCTCTAAATCTTCCCATAGCTAAGGTAGAGCCTGTAAAAGTCACCTTAAAGCCAGGAAAGGTTGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCCATAAAGAAAAAAGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACAGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGGATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGCTAAAGGAACTCTTAAATAGCATAGGGTTCTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCGACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAGATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTTAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAGGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAGTGGGATTTTATCTCAACGCCACCACTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTAGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGACAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAACCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAGGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAAGCTATACATGGGCAGGTAAATTCAGATCTAGGGACTTGGCAAATGGACTGTACCCATCTAGAAGGAAAAATAGTCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAAGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCCTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAAATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCCCTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAGAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAGGAACTTTTGGACAGATGTAACACCAGACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAAGTTCCCGAGAGCTCATAGGTACCAGGTACCAAGCCTACAGTACTTAGCACTAAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCAGTAAACCACCTACCAAGGGAGCTGATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACAAAGCTATGTAAAATACAGATACTTGTGTTTAATGCAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACACGGGGCAGGAGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGCCCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAATTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTTAGAGGCGGATGCAACCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAACTATACCGCCCTCTTGAGGCGTGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAGGGATTGGGGATATGTTATGAGCAGTCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCAATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTCTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAATTGGCCCTTAATGTTACAGAAAGCTTTGATGCTTGGGAGAATACAGTCACAGAACAGGCAATAGAGGACGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCATCAACAACAATAACAACAGCAGCACCAACATCAGCACCAGTATCAGAAAAAATAGACATGGTCAATGAGACTAGTTCTTGTATAGCTCAGAATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCACCATGACAGGGTTAAAAAGAGACAAGACAAAGGAGTACAATGAAACTTGGTACTCTACAGATTTGGTTTGTGAACAAGGGAATAGCACTGATAATGAAAGCAGATGCTACATGAATCACTGTAACACTTCTGTTATCCAAGAATCTTGTGACAAACATTATTGGGATACTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAACAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTAACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAGGATAGGGATGTAACTACCCAGAGGCCAAAGGAACGGCATAGAAGGAATTACGTGCCGTGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGACTGATGGAAACCAAACTAGTATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAGTTGGGAGATTATAAATTAGTAGAGATCACTCCGATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGGACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTAAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAGACTGGAACAATGATACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAGGAAAATATAACAGCCCTCCTAGAAGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAATTTATGTAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGTAGACTCATACCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAGGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGCATACCAGATCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACGAAGGGTTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAAGCCGGCTGGAGATCTGCGACAGAAACTCTTGCGGGCGCGTGGAGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATCCTCGCAATCCCTAGGAGGATTAGGCAAGGGCTTGAGCTCACGCTCTTGTGAGGGACAGAAATACAATCAGGGGCAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAAAAAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGGAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAGCAATGACTTACAAATTGGCAATAGATATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATGTACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGAGGCATTATTTAATGCAGCCAGCTCAAACTTCCAAGTGGGATGACCCTTGGGGAGAGGTTCTAGCGTGGAAGTTTGATCCAACTCTAGCCTACACTTATGAGGCATATGCTAGATACCCAGAAGAGTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAGGGAAACTCGCTGAGATAGCAGGGACTTTCCACAAGGGGATGTTATGGGGAGGAGCCGGTCGGGAACACCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCAGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCCAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCAACTCGGTACTCGGTAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGAGAAACCGAAGCAGGAAAATCCCTAGCATGAAGATGGACTAATATAGGAGAGACCT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SHIV89.6P', 'Virus', 'SHIV89.6P', 'RNA', 'SIV', 'CAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGTTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATCGTCACGGAGACACTCTAGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTGTAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGGAGTAAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCACAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACAAATAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCCTATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATGAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATTTGAATATCACTAAGAATACTACTAATCTCACTAGTAGCAGCTGGGGAATGATGGAGGAAGGAGAAATAAAAAATTGCTCTTTCTATATCACCACAAGCATAAGAAATAAGGTAAAGAAAGAATATGCACTTTTTAATAGACTTGATGTAGTACCAGTAAAAAATACTAGTAATACTAAGTATAGGTTAATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTCAGCCAATTCCCATACATTATTGTGTCCCGGCTGGGTTTGCGATACTAAAGTGTAACAATAAGACATTCAATGGATCAGGACCATGCACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTGGTGTCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGACATAGTAATTAGATCTGAAGATTTCACAGACAATGTTAAAACCATAATAGTACAGCTAAATGAATCTGTAGTAATTAATTGTACAAGACCCAACAACAATACAAGAGAAAGGTTATCTATAGGACCAGGGAGAGCATTTTATGCAAGAAGAAACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTACAACAGATAGTTATAAAATTAAGAGAAAAATTTAGGAATAAAACAATAGCCTTTAATCAATCCTCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAGCACAACTGTTTAATAGTACTTGGAATGTTGCTGGAGGGACAAATGGCACTGAAGGAAATGACATAATCACACTCCAATGCAGAATAAAACAAATTATAAATATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCACAGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTACTAACAAGAGATGGAGGTAATAGTACTGAGACTGAGACTGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCAATAGGAGTAGCACCCACCAGGGCAAAGAGAAGAACAGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGGCTATTATTGTCTGGTATAGTGCAGCAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGAATATGTTGCGACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAGGGATCAACAGCTCATGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTTCTGTGCCTTGGAATGTTAGTTGGAGTAATAAATCTGTGGATGATATTTGGAATAACATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAGACTATATATATGACTTACTTGAAAAATCGCAAACCCAACAAGAAAAGAATGAAAAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAGATTATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCTCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATCAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGGAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTATACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGTTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('E660', 'Virus', 'E660', 'RNA', 'SIV', 'GGGACTTGAAGGAGAGTGAGAGCTCCTGAGTACGGMTGWGTGAAGGCAGTAAGGGCGGCAGGAACAAAMCACGACGGAGAGCTCCTAGAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAGAAAAGTCATAGGACTGAGTTCCCTACTTTTGAGGAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGTTACGGCCCAACGGAAAGAAAAAGTATATGTTGAAGCATRTAGTATGGGCAGCAAATGAATTGGACAGATTTGGATTAGCAGAAAGCCTGTTGGATAACAAAGAAGGTTGTCAAAAAATTCTTTCRGTTTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTTTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTGGAAACAGGAACAGCAGACAAAATGCCAGCAACAAGCAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAARTAGGTGGCAATTATGTCCACCTACCCTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTRGTAGAAGAGAAAAAATTTGGGGCAGAGGTAGTGCCAGGATTTCAAGCGCTATCAGAAGGCTGCACTCCCTATGATATCAATCAAATGCTAAATTGTGTAGGAGAACATCAGGCAGCCATGCAAATTATTAGAGAGATTATAAATGAAGAAGCTGCCGATTGGGATTTACAACACCCGCARCCAGGTCCACTACCAGCAGGGCAACTTAGAGAGCCAAGAGGATCAGACATTGCAGGAACTACTAGTACAGTAGATGAACAAATCCAATGGATGTACAGGCAACAAAACCCYATACCAGTAGGCAACATTTATAGAAGGTGGATCCAATTAGGGCTGCAGAAATGTGTAAGAATGTATAACCCAACAAACATTTTAGATGTGAAACAAGGACCAAAAGAGCCATTTCAAAGCTACGTAGATAGATTCTAYAAAAGTCTAAGAGCAGAGCAAACAGATCCGGCAGTAAAGAATTGGATGACCCAAACACTGCTGATTCAAAATGCTAACCCAGATTGTAAATTRGTGCTCAAGGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGAATAGGAGGGCCAGGACAAAAAGCTAGATTAATGGCAGAAGCATTGAAAGAGGCACTGAGACCAGACCAACTCCCATTTGCAGCAGTCCAACAGAAAGGACAAAGGAGGACAATCAAGTGTTGGAATTGTGGAAAGGAGGGACACTCTGCAAGACAATGCAGGGCCCCTAGAAGACAGGGCTGCTGGRRGTGYGGAAAMACGGGTCATGTTATGGCCAAATGCCCTGAAAGACAGGCGGGTTTTTTAGGGCTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATGCCTCAGGGGCTGATACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAAGAATTACATGAAGATGGGCAGAAAGCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTCACTGCCTACATTGAAGAACAGCCCGTAGAAGTATTATTAGATACAGGGGCTGACGATTCAATTGTAGCAGGGATAGAATTGGGTCCAAATTATACCCCTAAAGTAGTAGGAGGAATAGGAGGCTTCATTAATACCAAAGAATATAAAGATGTAAAAATAAAAGTCTTAGGCAAGGTAATTAAGGGAACAATTATGACGGGAGATACCCCAATTAATATTTTTGGCAGAAATTTGCTAACAGCTATGGGCATGTCYTTAAATCTCCCCATAGCTAAGGTGGAGCCTATAAAAGTAACACTAAAACCAGGGAAAGAAGGACCAAAATTGAGACAGTGGCCGCTATCAAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCGTATAACACCCCCACTTTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGGATGCTAATAGATTTTAGAGAATTRAATAAGGTCACTCAAGACTTTACAGAAGTACAGTTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGGAGGATCACAGTATTGGATGTAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTCAGGCARTACACTGCCTTTACTTTACCATCAGTAAATAATGCWGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAGGGGTCACCAGCTATTTTTCAGTATACTATGAGAAATGTATTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACCCTGATCCAATACATGGATGACATCTTAATAGCTAGTGATAGAACAGATTTAGAGCATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTRAACGGCATAGGATTCTCYACCCCAGARGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAGAAAATAGAGTTGCCACAAAGAGAGACCTGGACAGTAAATGACATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACATCTTTGCAGACTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAAYAAGATAATTCTCAGTCAAGAACAAGAAGGATGTTACTACCAAGAGGGAAAACCAATAGAGGCAACAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAAGACAAAGTACTGAAAGTAGGTAAATTTGCAAAGGTTAAAAATACACATACAAATGGAGTCAGATTAYTAGCACACGTAGTGCAGAAAATAGGAAAAGAAGCACTAGTAATTTGGGGAGAGGTGCCAAAATTCCATTTGCCAGTAGAAAGAGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGTRACCTGGATACCAGATTGGGACTTTGTGTCAACACCTCCCTTAGTCAGATTAGTCTTCAACCTAGTAAAAGAGCCTATACAGGGGGCAGAAACATTYTATGTAGATGGATCCTGTAATAGGCAGTCAAGAGAAGGAAAAGCAGGCTATGTGACGGATAGGGGCAGAGACAAAGCAAAACTTTTAGAACAGACTACCAACCAACAAGCAGAGTTGGAAGCCTTTTATCTAGCCTTARCAGATTCGGGACCRAAAGCAAATATTATAGTAGATTCCCAATATGTTATGGGCATAATAGCAGGTCAACCCACTGAATCAGAAAGTAGGTTAGTAAACCAGATAATAGAGGAGATGATTAAAAARGAAGCAATTTATGTAGCATGGGTRCCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTAGATCACCTGGTTAGCCAGGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCACAAGAAGAGCATGAAAAGTACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGTTTACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAAATGCCACCAGAAAGGAGAAGCCATACATGGGCAAGTAAATGCAGAACTAGGGACTTGGCAAATGGACTGTACGCACCTAGAAGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTCATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGTTAAAGTTAGCTGGCAGATGGCCTATCACACATCTGCATACTGATAATGGTGCCAATTTCACATCACAAGAAGTGAAAATGGTTGCCTGGTGGGCAGGGATTGAACAGACCTTTGGGGTGCCTTATAATCCACAGAGCCAAGGAGTAGTGGAAGCAATGAACCATCATTTAAAAACCCAGATAGATAGAATTAGAGAACAAGCAAACTCAATAGAGACYATAGTACTAATGGCAGTTCATTGYATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAGATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGAATTGGATAGTGGTTCCCACTTGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAAGACCTACAGATGGCTTGTTATGTGCCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGAGTAATTTTCCCATTAAGRGATGAGACTCATTTGGAAGTACAAGGATATTGGAATTTGGCACCAGAAAAAGGATGGCTCAGTACTCATGCAGTAAGAATAACCTGGTACTCCAGAAATTTCTGGACAGATGTAACACCAGATTATGCAGACACTTTACTGCATAGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACGAAGGGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAAAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTAAGTCATGTCAGATCCCAGGGAGAGGATCCCACCTGGAAACAGTGGGGAAGAAACAATAGAAGARGCCTTCGAATGGCTAAACAGAACAGTAGAAGGAATAAACAGGGCAGCAGTAAATCACCTGCCGAGGGAGCTAATTTTCCAGGTTTGGCGAAGGTCCTGGGAATACTGGCATGATGAWATGGGRATGTCAGAAAGCTACACAAAATATAGATACTTGTGCTTGATACAGAAAGCTCTGTTTGTGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGARGRGCATGGGGCAGGGGGATGGAGAACAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGGCAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCATGGGATGAATGGGTAGTGGAAGTTCTGGAGGAATTAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATTTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAACTCATTAGAATCCTGCAGAGAGCACTCTTCATCCATTTCAGAAGTGGATGTGCCCACTCCAGAATCGGCCAATCTAGAGGAGGAAATCCTCTATCAACTATACCGCCCTCTAGAGACATGCTATAACAAGTGCTACTGTAAGAGGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGAATATGCTATGAGCAGCACCGAAGAAGAACTCCGAAAAAGACTAAGGCTAATCCACTTCCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTAGTAAGTGCTTTAGAGATTTATTGTGTTCAATATGTAACAGTATTCTATGGTGTACCAGCATGGAAGAATGCGACAATTCCCCTCTTCTGTACAACCAGGAATAGGGACACTTGGGGAACAACACAATGCTTGCCAGATAATGATGATTACTCAGAATTGGCAATCARTATCACAGAGGCTTTTGATGCTTGGAATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTGAAACATCCATTAAGCCCTGTGTAAAACTCACCCCACTATGTATAGCAATGAGATGTAATAAAACTGAGACAGATAGGTGGGGTTTGACAAGRAACGCAGGGACAACAACAACAACAACAACAACAACAACAGCAGCAACACCAAGTGTRGCAGAAAATGTTATAAATGAAAGTAATCCTTGCATAAAAAATAATAGTTGTGCAGGCTTGGAACAGGAGCCCATGATAGGTTGTAAATTTAACATGACAGGGTTAAAAAGGGACAAAAGGATAGAATATAATGAAACATGGTATTCAAGAGATTTAATCTGTGAGCAGTCAGCGAATGAAAGTGAGAGTAAATGTTACATGCATCATTGTAACACCAGTGTTATTCAGGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATATTGTGCACCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGCTCCTAACTGTTCTAAGGTAGTGGTTTCTTCATGCACAAGAATGATGGAGACGCAAACCTCTACTTGGTTTGGCTTCAATGGTACTAGGGCAGAAAATAGAACATACATTTATTGGCATGGCAAAAGTAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATGAGATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCAGGGTTGGTCTTCCATTCGCAACCCATAAATGAGAGACCAAAACAGGCCTGGTGCTGGTTTGGAGGAAGCTGGAAAGAGGCCATCCAGGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATGATACTAAGAAAATTAATCTAACAGCTCCAGCAGGAGGAGATCCAGAAGTCACTTTTATGTGGACAAATTGTAGAGGAGAATTCTTATACTGCAAAATGAATTGGTTTCTTAATTGGGTAGAGGACAGAGACCAAAAGRGTAGCAGATGGAGACAACAAAATACGAGAGAGCGACAGAAGAAAAATTATGTGCCATGTCATATTAGACAAATAATCAACACGTGGCACAAAGTAGGCAAAAATGTATATTTGCCTCCTAGGGAAGGAGACCTGACATGTAATTCCACTGTAACTAGTCTCATAGCAGAGATAGATTGGACCAATAACAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGAGATTACTCCAATTGGCTTGGCCCCCACAAGTGTAAGAAGGTACACCACAACTGGTGCCTCAAGAAATAAGAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCGACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCGGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACTAAGAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTGAAGGATCAGGCGCAGCTAAATTCATGGGGATGTGCTTTTAGGCAAGTCTGTCACACTACTGTACCATGGCCAAATGAAACATTGGTGCCTAATTGGAGCAATATGACTTGGCAAGAGTGGGAAAGACAGGTTGACTTCCTAGAGGCAAATATAACTCAATTATTAGAAGAAGCACAAATTCAGCAAGAAAAGAATATGTATGAATTGCAAAAACTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAAGATATATACAATATGGTGTACTAATAGTTTTAGGAGTAGTAGGGTTAAGAATAGTAATATATGTAGTGCAGATGTTAGCTAGGTTAAGACAGGGTTATAGGCCAGTGTTCTCTTCCCCTCCCGCTTATGTTCAGCAGATCCCTATCCACAAGGGCCAGGAACCGCCAACCAAAGAAGGAGAAGAAGGAGAAGGTGGAGACAGAGGTGGCAACAGATCTTGGCCTTGGCAGATAGAATATATTCATTTCCTAATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAGCTGCAGGGATTGGCTATTGAGGAYCTACCAGRTCCTCCAACCAGTRCTCCAGAGCCTCTCAACGACGTYGCAAAGAGTCCGTGAAGTCATCAGAATTGGAATAGCCTACCTACAATATGGGTGGCGTTATTTCCAAGAAGCAGTGCAGGCGTGGTGGAAATTTGCGCGAGAGACTCTTGCAAGCGCGTGGAGAGACATATGGGAGACTCTGGGAAGGGTTGGAAGAGGGATACTCGCAATCCCKAGGCGCRTCAGGCAAGGGYTTGAGCTCRCTCTCTTGTGAGCCTCAGAAATATAGTGAGGGACAATATATGAATACCCCCTGGAGGAACCCAGCAGCAGAAAGAGCAAAATTAGGTTATAGACAACAAAACATGGATGATGTGGATGATGAAGATGATGACTTAGTARGTGTCTCAGTGCACCCAAGAGTCCCCTTAAGGGCCATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAATGAGAAAAGACATAGAATATTAGATATGTACATGGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACATCAGGGCCAGGAACTAGATACCCTATGTACTATGGGTGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGARGCTCAGGAAGACGAGACACATTGCCTGATGCATCCGGCACAGACTCATCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAATTAGCTTATAGCTATAAGGCATTTATTAAGTACCCAGAAGAGTTTGGTAGTAAGTCAGRCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCCTTATTAAAATGGCTGACAAGAAGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAGGGRCTKTCACATGGGGAGGTWCTGGGGAGGAACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTCTCTGTATAAATATAACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTAGAAGTAAGCAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATCTCGGTACTCGACAYATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('HXB2', 'Virus', 'HXB2', 'RNA', 'HIV', 'GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTATAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTC'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac251_CMstock', 'Virus', 'SIVmac251_CMstock', 'RNA', 'SIV', 'XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCGGCGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAGAGTCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAGCAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGCTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAGCTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGCTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAATCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGATTCTACAAAAGCTTAAGAGCAGAACAAACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGACCAGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGAGGACCAAAAAAGCCAATTAAATGTTGGAATTGTGGGAAAGAAGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGACGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAGGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATCTTCCCATAGCTAAGGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGTTGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAARGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACAGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGGATTACAGTACTGGAYATAGGTGACGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTCTTAAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCGACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTTTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAGATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATGCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTTAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAGGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCACTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAGGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAACCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAGGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACATGTGATAAATGTCATCAGAAAGGAGAAGCTATACATGGGCAGGTAAATTCGGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAGTCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAAGTAATTCCACAAGAAACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAAGCAGATGGCCTGTTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCATCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAAATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAGTATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTATAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAGAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAGGAACTTTTGGACAGATGTAACACCAGACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGAACCAGGTACCAAGTCTACAGTACTTAGCACTGAGAGTAGTAAGTGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACAYGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAGAGACCTCCAGAAAATGAAGGCCCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCAACCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAACTATACCGCCCTCTTGAGGCGTGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAGGGCTTGGGGATATGTTATGAGCAGTCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCAATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTCTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATRRTGATTATTCAGAATTGGCCMTTAATGTTACAGAAAGCTTTGATGCTTGGGAGAATACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAAATGGGGATTAACAAAATCATCAACAACAACAACAGCATCAACAACAAGGACAACATCAGCAAAAATAGACATGGTCAATGAGACTAGTTCTTGTATAACTCATAATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAGTTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAGGAGTACAATGAAACTTGGTACTCTACAGATTTGGTTTGTGAACAAGGGAATAGCACTGATAATGAAAGTAGATGCTACATGAATCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAGCATTATTGGGATACTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGAGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAATTGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAGATCAATTTGACGGCTCCTAGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTTCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATCTAACTCTAACTACCCAGAAGCTAAGGGAACGGCATAAAAGGAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGACTGATGGAAATCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGGACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAGACTGGAACAATGATACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAGGAAAATATAACGGCCCTTCTAGAAGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAGGTATATACAATATGGAATTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTCCCAGCAGATCCATACCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAGGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGATCCTCCAACCAATACTCCAGGGGCTCTCTGCGACCCTACGGAGAATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAAGCCGGCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATCCTCGCAATCCCTAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTACATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATGTAGATGAGGAAGATGATGACTTGGTAGGGGTACCAGTGATGCCACGAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGATATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATGTACTTAGAAAAGGAGGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTGCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTAGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAGACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_PA', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCGAAAGCAGGTACTGATTCGAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGATGATTGTCGAGCTTGCGGAAAAGGCAATGAAAGAGTATGGAGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACTCACTTGGAAGTATGCTTCATGTATTCAGATTTTCATTTCATCAATGAGCAAGGCGAATCAATAATAGTAGAGCCTGAGGACCCAAATGCACTTTTAAAACACAGATTTGAGATAATAGAGGGACGAGATCGTACAATGGCATGGACAGTTGTAAACAGTATTTGCAACACCACAGGAGCTGAGAAACCAAAGTTTCTGCCAGATCTGTATGATTACAAAGAGAATAGATTCATCGAGATTGGAGTGACAAGGAGGGAAGTTCACATATACTATCTGGAAAAGGCCAACAAAATTAAATCTGAAAAGACACACATTCACATTTTCTCATTCACTGGCGAAGAAATGGCCACAAAGGCCGATTACACTCTCGATGAAGAAAGCAGGGCTAGGATTAAAACCAGACTATTCACCATAAGACAAGAAATGGCAAGCAGGGGTCTTTGGGACTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAGATTTGAAATCACAGGGACAATGCGCAGGCTTGCTGACCAAAGCCTTCCGCCGAACTTCTCCTGCATTGAGAATTTTAGAGCCTATGTGGATGGATTTGAACCGAACGGCTACATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAAGTAAATGCTAGAATTGAGCCTTTTTTGAAAACAACACCACGACCAATTAGACTTCCGGATGGGCCTCCTTGTTTTCAGCGGTCAAAATTCCTGCTGATGGATTCTTTAAAATTAAGCATTGAGGATCCAAATCATGAAGGAGAGGGAATACCACTATATGATGCAATCAAGTGTATGAGAACATTCTTTGGATGGAAAGAACCCTCTGTTGTCAAGCCACACGAGAAGGGAATAAATCCGAATTATCTGCTGTCATGGAAGCAGGTATTGGAAGAGCTGCAGGACATTGAGAGTGAGGAGAAGATTCCAAGAACAAAGAACATGAAAAAAACGAGTCAGCTAAAGTGGGCACTTGGTGAGAACATGGCACCAGAGAAGGTTGATTTTGATGACTGTAAAGATATAAGCGATTTGAAGCAATATGATAGTGACGAACCTGAATTAAGGTCATTTTCAAGTTGGATCCAGAATGAATTCAACAAGGCATGCGAGCTGACCGATTCAATCTGGATAGAGCTCGATGAGATTGGAGAAGATGTGGCCCCGATTGAACACATTGCAAGCATGAGAAGAAATTACTTCACAGCTGAGGTGTCCCATTGCAGAGCCACAGAATATATAATGAAGGGGGTATACATTAATACTGCTTTGCTTAATGCATCCTGTGCAGCAATGGATGATTTCCAACTAATTCCCATGATAAGCAAATGTAGAACTAAAGAGGGAAGGAGAAAGACCAATTTGTACGGCTTTATCATAAAAGGAAGATCTCACTTAAGGAATGACACCGATGTGGTAAACTTTGTGAGCATGGAATTTTCCCTCACTGACCCAAGACTTGAGCCACACAAATGGGAGAAGTACTGTGTTCTCGAGATAGGAGATATGCTTCTAAGGAGTGCAATAGGCCAAGTGTCAAGGCCCATGTTCTTGTATGTAAGGACAAATGGAACCTCAAAAATTAAAATGAAATGGGGAATGGAGATGAGGCGTTGCCTCCTCCAATCCCTTCAACAAATAGAGAGCATGATTGAAGCTGAATCCTCTGTCAAGGAGAAAGACATGACAAAAGAGTTTTTTGAGAATAGATCAGAAACATGGCCCATTGGAGAGTCACCAAAGGGAGTGGAAGAAGGTTCCATTGGGAAAGTATGCAGGACACTATTGGCTAAGTCAGTATTCAATAGTCTGTATGCATCGCCACAATTAGAAGGATTTTCAGCTGAGTCAAGAAAGTTGCTCCTCATTGTTCAGGCTCTTAGGGACAATCTGGAGCCTGGGACCTTTGATATTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCTTCTTGGTTCAACTCCTTCCTAACACATGCATTGAGATAGTTGGGGCAATGCTACTATTTACTATCCATACTGTCCAAAAAAGTACCTTGTTTCTACTAATAGGAGACGTGTGTG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_PB1', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAGGCAAACCATTTGAATGGATGTCAATCCGACCTTACTTTTCTTAAAAGTGCCAGCACAAAATGCTATAAGCACAACTTTTCCTTATACTGGTGATCCTCCTTACAGCCATGGGACAGGAACAGGGTACACCATGGATACAGTCAACAGGACACATCAGTACTCAGAAAGAGGAAGATGGACAAAAAATACCGAAACTGGAGCACCGCAACTCAACCCAATTGATGGACCACTACCAAAAGACAATGAACCAAGTGGCTATGCCCAAACAGATTGTGTATTAGAAGCAATGGCTTTCCTTGAGGAATCCCATCCTGGTATTTTTGAAAACTCTTGTATTGAAACAATGGAGGTTGTTCAGCAAACAAGGGTGGACAAACTGACACAAGGCAGACAGACCTATGACTGGACTCTAAATAGAAACCAGCCTGCTGCCACAGCATTGGCCAACACTATAGAAGTGTTCAGATCAAACGGCCTCATAGCAAATGAATCTGGGAGGCTAATAGACTTCCTTAAAGATGTAATGAAGTCGATGGACAGAGACGAAGTAGAGATCACAACACATTTTCAGAGAAAGAGGAGGGTGAGAGACAATGTAACTAAAAAAATGGTGACCCAAAGAACAATAGGCAAAAAGAAACATAAATTAGACAAAAGAAGTTACCTAATTAGGGCATTAACCCTGAACACAATGACCAAAGATGCTGAGAGGGGGAAACTAAAACGTAGAGCAATTGCAACCCCAGGAATGCAAATAAGGGGGTTTGTATACTTTGTTGAGACACTGGCAAGAAGCATATGTGAAAAGCTTGAACAATCAGGGTTGCCAGTTGGGGGAAATGAAAAGAAAGCAAAGTTAGCAAATGTTGTAAGGAAGATGATGACCAACTCCCAGGACACTGAAATTTCTTTCACCATCACTGGAGATAACACAAAATGGAACGAAAATCAAAACCCTAGAATGTTTTTGGCCATGATCACATATATAACCAAAAATCAGCCTGAATGGTTCAGAAATATTCTAAGTATTGCTCCAATAATGTTTTCAAACAAAATGGCGAGACTAGGTAAGGGGTACATGTTTGAAAGCAAGAGTATGAAACTGAGAACTCAAATACCTGCAGAGATGCTAGCCAACATAGATTTGAAATATTTCAATGATTCAACTAAAAAGAAAATTGAAAAAATCCGGCCATTATTAATAGATGGAACTGCATCATTGAGTCCTGGAATGATGATGGGCATGTTCAATATGTTAAGCACCGTCTTGGGCGTCTCCATTCTGAATCTTGGGCAAAAGAGATACACCAAGACTACTTACTGGTGGGATGGTCTTCAATCGTCTGATGATTTTGCTCTGATTGTGAATGCACCCAACCATGCAGGAATCCAAGCTGGAGTTGACAGGTTTTATCGAACCTGTAAGCTGCTCGGAATTAATATGAGCAAAAAGAAGTCTTACATAAACAGAACAGGTACCTTTGAATTCACGAGCTTTTTCTATCGTTATGGGTTTGTTGCCAATTTCAGCATGGAGCTTCCTAGTTTTGGGGTGTCTGGGGTCAATGAGTCTGCAGACATGAGTATTGGAGTCACTGTCATCAAAAACAATATGATAAACAATGACCTTGGCCCAGCAACTGCTCAAATGGCCCTTCAGTTATTTATCAAAGATTACAGGTACACGTATCGATGCCACAGAGGTGACACACAAATACAAACCCGGAGATCATTTGAGATAAAGAAACTATGGGACCAAACCCGCTCCAAAGCTGGGCTGTTGGTCTCTGATGGAGGCCCCAATTTATATAACATTAGAAATCTCCATATTCCTGAAGTCTGCTTGAAATGGGAGTTGATGGATGAGGATTACCAGGGGCGTTTATGCAACCCATTGAACCCATTTGTCAGTCATAAAGAGATTGAGTCAGTGAACAATGCAGTGATGATGCCGGCACATGGTCCAGCCAAAAATATGGAGTATGACGCTGTTGCAACAACACACTCCTGGGTTCCCAAAAGGAATCGATCCATTTTGAATACGAGCCAAAGGGGGATACTTGAGGATGAGCAAATGTATCAGAGGTGTTGCAATTTATTTGAAAAATTCTTCCCAAGTAGCTCATACAGAAGACCAGTTGGAATATCCAGTATGGTAGAGGCTATGGTTTCCAGAGCCCGAATTGATGCAAGAATTGATTTCGAATCTGGAAGGATAAAGAAAGAGGAATTCGCTGAGATCATGAAGACCTGTTCCACCATTGAAGACCTCAGACGGCAAAAATAGGGAATTTGGCTTGTCCTTCATGAAAAAATGCCTTGTTTCTACTAATAGGAGACCTGTGTG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_PB2', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCGAAAGCAGGTCAATTATATTCAATATGGAAAGAATAAAAGAGCTAAGGAATCTGATGTCACAATCTCGCACTCGCGAGATACTTACAAAAACTACTGTAGACCACATGGCCATAATCAAAAAATACACATCCGGAAGACAGGAGAAAAACCCATCACTTAGGATGAAATGGATGATGGCAATGAAATACCCAATTACAGCAGACAAAAGGATAACGGAAATGATTCCTGAAAGAAATGAGCAAGGACAGACATTATGGAGTAAAGTGAATGATGCCGGGTCAGACCGAGTGATGATATCACCCCTGGCTGTGACATGGTGGAATAGAAATGGACCAGTGGCAAGTACTATTCACTATCCAAAAATCTACAAAACTTACTTTGAAAAGGTTGAAAGGTTAAAACATGGAACCTTTGGCCCTGTACACTTTAGAAACCAAGTCAAAATACGCCGAAGAGTCGACATAAATCCTGGTCATGCAGACCTCAGCGCCAAGGAGGCACAGGATGTAATTATGGAAGTTGTTTTCCCTAATGAAGTGGGAGCCAGAATACTAACATCAGAATCGCAATTAACGATAACCAAAGAGAAAAAAGAAGAACTCCAAAATTGCAAAATTTCCCCTTTGATGGTTGCATACATGTTAGAGAGGGAACTTGTCCGCAAAACGAGATTTCTCCCGGTTGCTGGTGGAACAAGCAGTGTGTACATTGAAGTTTTGCATTTAACACAGGGGACATGCTGGGAACAGATGTACACTCCAGGTGGAGAGGTGAGGAATGATGATGTTGATCAAAGCCTAATTATTGCTGCTAGGAACATAGTGAGAAGAGCTGCAGTATCAGCAGATCCACTAGCATCTTTATTAGAAATGTGCCATAGCACACAGATTGGTGGAACAAGGATGGTGGATATTCTCAGGCAAAACCCAACAGAAGAACAAGCTGTGGATATATGCAAAGCAGCAATGGGGCTGAGAATCAGTTCATCCTTCAGTTTTGGCGGATTCACATTCAAGAGAACAAGTGGATCATCAGTCAAAAGGGAGGAAGAAATGCTCACGGGCAATCTGCAAACATTGAAGCTAACTGTGCATGAGGGATATGAAGAGTTCACAATGATTGGGAAAAGGGCAACAGCTATACTTAGAAAAGCAACCAGGAGATTGATTCAACTAATAGTGAGTGGACGAGACGAACAGTCGATAGTCGAAGCAATAGTTGTAGCAATGGTATTCTCACAAGAAGATTGCATGGTAAAAGCAGTTAGAGGTGATCTGAATTTCGTCAATAGAGCGAATCAGCGGTTGAATCCCATGCATCAACTTTTGAGACATTTTCAGAAGGATGCTAAAGTACTTTTCTTAAATTGGGGAATTGAACCTATCGACAATGTGATGGGAATGATTGGGATATTACCTGATATGACTCCAAGTACCGAGATGTCAATGAGAGGAGTGAGAGTCAGCAAAATGGGTGTAGATGAATACTCCAATGCTGAAAAGGTAGTGGTGAGCATTGACCGTTTTTTGAGAGTCCGGGACCAAAGAGGAAATGTACTACTGTCTCCAGAGGAAGTCAGTGAGACACAGGGAACAGAGAAACTGACAATAACTTACTCTTCATCAATGATGTGGGAGATTAATGGCCCTGAGTCAGTGTTGATCAATACCTATCAGTGGATCATCAGAAACTGGGAGACTATTAAAATTCAGTGGTCTCAGAACCCTACAATGCTATACAATAAAATGGAATTCGAGCCATTTCAGTCTCTAGTCCCTAAGGCCATTAGAGGCCAATACAGTGGGTTTGTTAGAACTCTATTCCAACAAATGAGGGATGTGCTTGGGACCTTTGACACAACTCAGATAATAAAACTTCTTCCCTTTGCAGCCGCTCCACCAAAGCAAAGTAGAATGCAATTCTCATCATTGACTGTGAATGTGAGAGGATCAGGAATGAGAATACTTGTAAGGGGTAATTCTCCAGTATTCAACTACAACAAGACCACTAAGAAACTCACAGTCCTCGGAAAGGATGCTGGCACTTTAACTGAAGACCCAGATGAAGGCACAGCTGGAGTGGAATCTGCTGTTTTAAGGGGATTCCTCATTCTAGGCAAAGAAGATAGAAGATATGGGCCAGCATTAAGCATCAATGAATTGAGCAACCTTGCGAAAGGAGAAAAAGCTAATGTGCTAATTGGGCAAGGGGACGTAGTGTTGGTGATGAAACGAAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAATTTCGAATAATTTAAAAACGACCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_NP', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGGTAGATAATCACTCACTGAGTGACATCAAAGTCATGGCGTCCCAAGGCACCAAACGGTCTTACGAACAGATGGAGACTGATGGGGAACGCCAGAATGCAACTGAAATCAGAGCATCCGTCGGAAGAATGATTGGTGGAATTGGGCGATTCTACATCCAAATGTGCACCGAGCTTAAACTCAATGATTATGAGGGACGACTGATCCAGAACAGCTTAACAATAGAGAGAATGGTGCTCTCTGCTTTTGATGAGAGGAGAAATAAATATCTGGAAGAACATCCCAGCGCGGGGAAAGATCCTAAGAAAACTGGAGGACCCGTATACAAGAGAGTAGATGGAAAGTGGGTGAGGGAACTCGTCCTCTATGACAAAGAAGAAATAAGGCGGATTTGGCGCCAAGCCAACAATGGTGATGATGCAACGGCTGGTTTGACTCACATTATGATCTGGCACTCTAATTTGAATGATACAACTTACCAGAGGACAAGAGCTCTTGTCCGCACCGGAATGGATCCCAGGATGTGCTCTTTGATGCAAGGTTCAACTCTCCCTAGAAGATCTGGAGCAGCAGGCGCTGCAGTCAAAGGAGTTGGGACAATGGTATTGGAATTGATCAGGATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAGAATGGAAGAAAAACAAGAATTGCTTATGAGAGAATGTGCAACATTCTCAAAGGAAAATTTCAAACAGCTGCACAAAAAGCAATGATGGATCAAGTGAGAGAAAGCCGGAACCCAGGAAATGCTGAGATCGAAGATCTCACTTTTTTGGCACGGTCTGCACTCATATTAAGAGGGTCAGTTGCTCATAAGTCTTGCCTGCCTGCCTGTGTGTATGGACCAGCCGTAGCCAGTGGGTACGACTTCGAAAAAGAGGGATACTCTTTGGTAGGGGTAGACCCTTTCAAACTGCTTCAAACCAGTCAGGTATACAGCCTAATCAGACCAAACGAGAATCCCGCACACAAGAGCCAGTTGGTGTGGATGGCATGCAATTCTGCTGCATTTGAAGATCTAAGAGTGTCAAGCTTCATCAGAGGGACAAAAGTACTTCCAAGGGGGAAGCTCTCCACTAGAGGAGTACAAATTGCTTCAAATGAAAACATGGATGCTATTGTATCAAGTACTCTTGAACTGAGAAGCAGATACTGGGCCATAAGAACCAGAAGTGGAGGGAACACTAATCAACAAAGGGCCTCTGCGGGCCAAATCAGCACACAACCTACGTTTTCTGTGCAGAGAAACCTCCCATTTGACAAAACAACCATCATGGCAGCATTCACTGGGAATACGGAGGGAAGAACATCAGACATGAGGGCAGAAATCATAAAGATGATGGAAAGTGCAAGACCAGAAGAAGTGTCCTTCCAGGGGCGGGGAGTCTTTGAGCTCTCGGACGAAAGGGCAACGAACCCGATCGTGCCCTCCTTTGACATGAGTAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTACGACAATTAAAGAAAAATACCCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_HA', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGGGAAAATAATAACAACCAAAATGAAAGCAAAACTACTGGTCCTGTTATGTACATTTACAGCTACATACGCAGACACAATATGTATAGGCTACCATGCCAACAACTCAACCGACACTGTTGACACAGTACTTGAGAAGAATGTGACAGTGACACACTCTGTCAACCTACTTGAGGACAGTCACAATGGAAAACTATGTCTACTAAAAGGAATAGCCCCACTACAATTGGGTAATTGCAGCGTTGCCGGATGGATCTTAGGAAACCCAGAATGCGAATTACTGATTTCCAAGGAATCATGGTCCTACATTGTAGAAACACCAAATCCCGAGAATGGAACATGTTACCCAGGGTATTTCGCCGACTATGAGGAACTGAGGGAGCAATTGAGTTCAGTATCTTCATTTGAGAGATTCGAAATATTCCCCAAAGGAAGCTCATGGCCCAACCACACCGTAACCGGAGTATCAGCATCATGCTCCCATAATGGGAAAAGCAGTTTTTACAGAAATTTGCTATGGCTGACGAGGAAGAATGGTTTGTACCCAAACCTGAGCATGTCCTATGTAAACAACAAAGAGAAAGAAGTCCTTGTGCTATGGGGTGTTCATCACCCACCTAACATAGGGGACCAAAGGGCCCTCTACCATACAGAAAATGCTTATGTCTCTGTAGTGTCTTCACATTATAGCAGAAGATTCACCCCAGAAATAGCCAAAAGACCCAAAGTAAGAGATCAGGAAGGAAGAATCAACTACTACTGGACTCTGCTGGAACCCGGGGACACAATAATATTTGAGGCAAATGGAAATCTAATAGCGCCATGGTATGCTTTCGCACTGAGTAGAGGCTTTGGATCAGGAATCATCACCTCAAATGCACCAATGGATGAATGTGATGCGAAGTGTCAAACACCTCAGGGAGCTATAAACAGTAGTCTTCCTTTCCAGAATGTACACCCAGTTACAATAGGAGAGTGTCCAAAGTATGTCAGGAGTGCAAAATTAAGGATGGTTACAGGACTAAGGAACATCCCATCCATTCAATCCAGAGGTTTGTTTGGAGCCATTGCCGGTTTCATTGAAGGGGGGTGGACTGGAATGGTAGATGGGTGGTATGGTTATCATCATCAGAATGAGCAAGGATCTGGCTATGCTGCAGATCAAAAAAGCACACAAAATGCCATTAACGGGATTACAAACAAGGTGAATTCTGTAATTGAGAAAATGAACACTCAATTCACAGCTGTGGGCAAAGAATTCAACAAATTAGAAAGAAGGATGGAAAACTTAAATAAAAAAGTTGATGATGGGTTTCTAGACATTTGGACATATAATGCAGAATTGTTGGTTCTACTGGAAAATGAAAGGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAATTAAAGAATAATGCCAAAGAAATAGGAAACGGGTGTTTTGAATTCTATCACAAGTGTAACAATGAATGCATGGAAAGTGTGAAAAATGGAACTTATGACTATCCAAAATATTCCGAAGAATCAAAGTTAAACAGGGAGAAAATTGATGGAGTAAAATTGGAATCAATGGGAGTCTATCAGATTCTGGCGATCTACTCAACTGTCGCCAGTTCCCTGGTTCTTTTGGTCTCCCTGGGGGCAATCAGTTTCTGGATGTGTTCCAATGGGTCTTTGCAGTGTAGAATATGCATCTGAGACCAGAATTTCAGAAATATAAGAAAAAACACCCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVsmE041', 'Virus', 'SIVsmE041', 'RNA', 'SIV', 'CTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGCTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACAAACCACGACGGAGTGCTCCTATAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAAAAGAGTCATAGGACTGAGTTCCCTACTTTTGAGGAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAAAAAGCAGATGAATTAGAAAAAATTAGGTTACGGCCCGGCGGAAAGAAAAAGTACATGCTGAAGCATGTAGTATGGGCAGCAAACGAATTGGACAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGTTGTCAAAAAATTCTTTCAGTCTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTTTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTAGAAACAGGAACAGCAGACAAAATGCCAGTAACAAGTAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAAGTAGGTGGCAATTATACCCACCTACCCTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTGATAGAAGAGAAAAAATTTGGGGCAGAAGTAGTGCCAGGATTCCAAGCACTATCAGAAGGCTGCACTCCCTATGACATCAATCAGATGCTAAATTGTGTAGGGGAACATCAATCAGCCATGCAAATTATTAGAGAAATTATAAATGAAGAAGCTGCTGATTGGGATTTACAACACCCACAGCCAGGTCCAATACCAGCAGGACAACTTAGAGATCCGAGAGGATCAGACATTGCAGGAACTACTAGCACAGTAGAAGAACAAATTCAATGGATGTATAGGCAGCAAAACCCTATACCAGTAGGTAACATTTACAGAAGGTGGATCCAATTAGGGCTGCAAAAATGTGTAAGGATGTATAATCCAACAAACATTTTAGATGTGAAACAAGGACCAAAAGAGCCATTTCAAAGCTATGTAGATAGATTCTACAAGAGTCTAAGAGCAGAACAAACAGACCCAGCAGTGAAAAATTGGATGACTCAAACACTGCTGATTCAGAATGCTAACCCGGATTGCAAATTGGTGCTCAAGGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGAGTAGGAGGACCAGGACAAAAAGCTAGACTAATGGCAGAAGCCTTGAAAGAGGCGCTGACGCCAGGGCAACTCCCATTTGCAGCAGTCCAACAGAGAGGACAAAGAAAGACAATTAAATGTTGGAATTGTGGAAAGGAGGGACACTCTGCGAGACAATGCAGAGCCCCTAGAAGACAGGGATGCTGGAAGTGTGGAAAAACAGGCCATGTTATGGCCAAATGCCCCGAGAGACAGGCGGGTTTTTTAGGGCTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATACCTCAGGGGTTGACACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAGGAACTACATGAAGATGGGCAGAAGGCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTGACGGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTTACTGCCTACATTGAAGAACAGCCCGTAGAAGTATTATTAGATACAGGGGCTGATGATTCAATTGTAGCAGGGATAGAATTGGGTCCAAATTATACCCCTAAAATAGTAGGAGGAATAGGAGGTTTCATTAACACCAAGGAATATAAAGATGTAAAAATAAAAGTCTTAGGCAAGGTAATTAAGGGAACAATTATGACAGGAGATACCCCAATTAACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAAATCTCCCCATAGCTAAGGTGGAACCTATCAAAGTAACACTAAAACCAGGAAAAGATGGACCAAAATTAAGACAGTGGCCACTATCAAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCATATAACACCCCCACATTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGGATGCTAATAGACTTTAGAGAATTAAACAAGGTTACTCAAGATTTTACAGAAGTACAGTTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGAAGGATCACAGTATTGGATGTAGGTGATGCATATTTTTCCATACCTTTAGATGAGGAATTCAGGCAATACACTGCCTTTACTTTACCATCAGTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAAGGATCACCAGCTATTTTTCAGCATACTATGAGAAATGTCTTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACCCTGATCCAATACATGGATGACATCCTAATAGCTAGTGATAGAACAGATTTAGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTAAACAGTATGGGATTTTCCACCCCAGAAGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAAAAAATAGAGTTGCCACAAAAAGAAACCTGGACAGTAAATGATATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACACCTTTGCAGATTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAACAAGATAATTCTCAGTCAAGAACAAGAAGGGTGTTATTATCAAGAGGGAAAGCCACTGGAGGCAACAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAAGACAAAATACTAAAAGTAGGCAAATTTGCAAAGATTAAGAATACACATACAAATGGAGTCAGATTATTAGCACATGTAGTACAGAAAATAGGAAAAGAAGCAATAGTAATTTGGGGACAGGTGCCAAAATTTCATTTGCCAGTAGAGAGAGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACCAGAATGGGACTTTGTATCAACACCTCCCTTAGTCAGATTAGTCTTCAACCTAGTAAAAGAGCCTATACAGGGAGCAGAAACATTTTATGTAGATGGATCCTGTAACAGACAGTCAAAAGAAGGAAAGGCAGGCTATGTGACAGACAGAGGCAGAGACAGAACAAAACCGCTGGAACAGACTACCAATCAACAAGCAGAGTTGGAAGCCTTCCATCTAGCCTTAGCAGATTCAGGACCAAAAGCCAATATAATAGTAGACTCCCAATATGTTATGGGCATAATAGCGGGTCAACCCACTGAATCAGAAAGTAGATTAGTAAATCAGATAATAGAGGAAATGATTAAAAAGGAAGCAATTTATGTAGCGTGGGTACCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTAGATCATCTGGTAAGTCAAGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCGCAAGAAGAGCATGAGAAGTACCATAGCAATGTAAAAGAATTAGTATTCAAATTTGGATTACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAAATGTCACCAGAAAGGAGAGGCCATACATGGACAAGTAAATGCAGAACTAGGGACTTGGCAAATGGACTGTACACACCTAGAGGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTCATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGCTAAAATTAGCCAGCAGATGGCCCATCACACATCTGCATACTGATAATGGTGCCAACTTCACATCGCAAGAAGTGAAAATGGTTGCTTGGTGGGCAGGGATTGAACAGACCTTTGGGGTGCCTTATAATCCACAGAGCCAGGGAGTGGTGGAAGCAATGAACCATCATCTAAAAACCCAGATAGATAGAATTAGGGAACAGGCAAATTCAATAGAGACTATAGTACTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAAATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGAGTTGGATAGCGGTTCCCACTTGGAGGATACCGGGGAGGCTAGAGAAGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAAGACCTACAGAAGGCTTGTTATGTACCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGGGTGATCTTCCCATTAAGGGATGAGTCTCATTTGGAAGTACAAGGATATTGGAATTTGACACCAGAGAAAGGATGGCTCAGTACTTATGCAGTGAGAATAACCTGGTACTCCAGAAATTTCTGGACAGATGTAACACCAGATTATGCAGACACTTTACTGCATGGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACGAAGGGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAGAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTGAGTCATGTCAGATCCCAGGGAGAGGATCCCACCTGGAAACAGTGGAGAGGAAACAGTAGGCGAGGCCTTCGACTGGCTAGAAAGAACAGTAGAAGAAATAAACAGGGCAGCAGTGAATCATTTGCCGAGGGAGTTAATTTTCCAGGTTTGGCGAAGGTCCTGGGAATACTGGCATGATGAAATAGGGATGTCAGCCAGCTACACAAAATATAGATACTTGTGCTTGATACAAAAAGCTTTGTTTATGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGGAGAGCATGGGGCAGGGGGATGGAGACCAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGACAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCGTGGGATGAATGGGTAGTAGAAGTTCTGGAGGAAGTAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATCTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAGCTCATTAAAATCCTCCAGAGAGCACTCTTCATCCATTTCAGAGGTGGATGCAACCACTCCAGAATCGGCCACTCTGGAGGAGGAAATCCTCTCTCAACTATACCGCCCTCTAGAGGCGTGCTATAACAAGTGCTACTGTAAGAAGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGAATATGCTATGAGCAGCAACGAAGAAGAACTCCGAAGAAGACTAAGGCTAATACATTTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTATTAAGTGCTTTAGGGATTTCTTGTGTTCAATATGTAACAGTGTTCTATGGTGTACCAGCATGGAAGAATGCGACAATTCCCCTCTTCTGTGCAACCAAGAATAGGGATACTTGGGGAACAACACAATGCTTGCCAGATAATGATGATTACTCAGAATTGGCAATTAATGTCACAGAGGCTTTTGATGCTTGGGATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTCAAACATCCATTAAGCCCTGTGTAAAACTTACCCCACTATGTATAGCAATGAGGTGTAATAAAACTGAAACAGATAGATGGGGCTTAACAGGAAAACCAACAACAACAGCATCAACAACAACAAAAACAACATCAAAACCATCAGTAATAACAGCAAAGGTTATAAATGAAGGTGATCCATGCATAAAAAATAATAGTTGTGCAGGCTTGGAACAAGAACCCATGATAGGTTGTAAATTTAACATGACAGGGTTAAGAAAGGACAAACAGAGAGAATATAATGAAACATGGTATTCAAGAGATATAGTTTGTGAACAAAATAGCAATGAACATGAAACTGCCAGTAAATGTTATATGAACCATTGTAACACTAGTGTTATTCGAGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATATTGTGCTCCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGAACCTAACTGTACTAAGGTAGTAGTTTCTTCATGCACAAGAATGATGGAAACACAAACCTCTACTTGGTTTGGTTTCAATGGTACTAGAGCAGAAAATAGAACATACATTTATTGGCATGGTAGAAGCAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATAAGATGTAGGAGACCAGGAAATAAGACAGTCTTACCAGTCACCATTATGTCAGGGTTGGTCTTCCATTCGCAACCCATAAATGAGAGACCAAAACAGGCCTGGTGCTGGTTTGGAGGAAACTGGAAAGGGGCTATCCGAGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATAATACTGAGAAGATTAATCTAACAGCTCCAGCAGGAGGAGATCCGGAAGTTACTTTCATGTGGACAAATTGTCGAGGAGAATTCTTATATTGCAAAATGAATTGGTTTCTTAATTGGGTAGATGAGACAAGTGGTTTTAGATGGAATAAACAAAACCCGAAGGAGAAGAAAAGGAGGAATTATGTGCCATGTCATATTAGACAGGTAATTAATACGTGGCACAGGGTAGGCAAAAATGTGTATTTGCCTCCTAGGGAAGGAGACCTGACATGTAATTCCACTGTAACTAGCCTCATAGCAGAAATAGATTGGATCGATAAAAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAGCTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGAAATTACTCCAATTGGCTTGGCCCCCACAAGTGTAAGAAGGTACACCACAACCGGTGCCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCCGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACTAAGAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTAAAGGATCAGGCGCAGCTAAATTCATGGGGATGTGCTTTTAGGCAGGTCTGCCACACTACTGTACCATGGCCAAATGACACATTGGTACCTAATTGGAACAATATGACTTGGCAAGAGTGGGAAAGACAGGTTGACTTCCTAGAGGCAAATATAACTCAATTATTGGAAGAAGCACAAATTCAGCAAGAAAAGAATATGTATGAGTTGCAAAAATTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAAGATATATACAATATGGTGTACTTATAGTTCTAGGAGTAATAGGATTAAGAATAGTGATATATGTAGTGCAGATGTTAGCTAGGTTAAGACAAGGTTATAGGCCAGTGTTCTCTTCCCCTCCCGTTTATGTTCAGCAGATCCCTATCCAGAAGGGCCAGGAACCGCCAACCAAAGAAGGAGAAGAAGGAGACGGTGGAGACAGAGGTGGCAACAGATCTTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAGCTAATACGCCTCTTGAGTTGGCTATTCAACAGTTGCAGAGATTGGCTATTGAGGAGCTACCAGATCCTCCAGCCAGTGCTCCAGAGCCTCTCAAGGATACTGCAGAGAGTCCGTGAAGTCATCAGAGTTGAGATAACCTACCTACAGTATGGGTGGCGTTACTTCCAAGAAGCAGCGCAAGCATGGTGGAAATTTGCGCGAGAGACTCTTGCAAGCGCGTGGGGAGACTTATGGGAGACTCTGGGACGGGTTGGAAGGAGATTACTCGCAATCCCAAGACGGATCAGGCAGGGGCTTGAGCTCACTCTCTTGTGAGCCTCAGAAATATTGTGAGGGTCAATTTATGAATACCCCTTGGAGAAACCCAAGAGCAGAAGGAGCAAAATTAGATTATAGACAACAAAACATGGATGATGTGGATGATGATGATGATGACTTAGTAGGTTTTCCAGTGACCCCAAAAGTCCCCTTAAGGACCATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGATAGGAGACATAAAATATTGAATCTGTACTTAGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACAGCAGGGCCAGGAATCAGATACCCTATGTGTTTTGGATGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCTCAGGAGGACGAGGCACATTGCTTGATGCATCCAGCACAGACCTCTCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAGTTAGCTTATAACTATAAGGCATTTGTTAAGCACCCAGAAGAGTTTGGTAGTAGCTCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCCTTTTAAAAATGGCTGACAAGAAGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAAGGGGATGTTATGGGGAGGTACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTCTATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac239deltaNef', 'Virus', 'SIVmac239deltaNef', 'RNA', 'SIV', 'GCATGCACATTTTAAAGGCTTTTGCTAAATATAGCCAAAAGTCCTTCTACAAATTTTCTAAGAGTTCTGATTCAAAGCAGTAACAGGCCTTGTCTCATCATGAACTTTGGCATTTCATCTACAGCTAAGTTTATATCATAAATAGTTCTTTACAGGCAGCACCAACTTATACCCTTATAGCATACTTTACTGTGTGAAAATTGCATCTTTCATTAAGCTTACTGTAAATTTACTGGCTGTCTTCCTTGCAGGTTTCTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATTGTACTCTATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTTTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAAGTGGCCCTTAATGTTACAGAAAGCTTTGATGCCTGGAATAATACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTGGTACTCTGCAGATTTGGTATGTGAACAAGGGAATAACACTGGTAATGAAAGTAGATGTTACATGAACCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAACATTATTGGGATGCTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAAATGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTGACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATACAGCTAACCAGAAGCCAAAGGAACAGCATAAAAGGAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAAAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAAAGTGGAACAATGAGACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAAGAAAATATAACAGCCCTCCTAGAGGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAAGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGATCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACAGAGGATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVsmE041-1', 'Virus', 'SIVsmE041-1', 'RNA', 'SIV', 'ACAGGGACTTGAAGGAGAGTGAGAGCTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACAAACCACGACGGAGTGCTCCTATAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAAAAGAGTCATAGGACTGAGTTCCCTACTTTTGAGGAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAAAARGCAGATGAATTAGAAAAAATTAGGTTACGGCCCGGCGGAARGAAAAAGTACATGCTGAAGCATGTAGTRTGGGCAGCAAACGAATTGGACAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGTTGTCAAAAAATTCTTTCAGTCTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTTTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTRGAAACAGGAACAGCAGACAAAATGCCAGYAACAAGTAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAAGTAGGTGGCAATTATACCCACCTACCYTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTGATAGAAGAGAAAAAATTTGGGGCAGAAGTAGTGCCAGGATTCCAAGCACTATCAGAAGGCTGCACTCCCTATGACATCAATCAGATGYTAAATTGTGTRGGGGAACATCAATCAGCCATGCAAATTATTAGAGAAATTATAAATGAAGAAGCTGCTGATTGGGATTTACAACACCCRCAGCCAGGYCCAATACCAGCAGGACAACTTAGAGATCCGAGAGGATCAGACATTGCAGGAACTACTAGCACAGTAGAAGAACAAATTCAATGGATGTATAGGCAGCAAAACCCTATACCAGTAGGTAACATTTACAGAAGGTGGATCCAATTAGGGCTGCAAAAATGTGTAAGGATGTATAATCCAACAAACATTTTAGATGTGAAACAAGGACCAAAAGAGCCATTTCAAAGCTATGTAGATAGRTTCTACAAGAGTYTAAGAGCAGAACAAACAGACCCAGCAGTGAAAAATTGGATGACTCAAACACTGCTGATTCAGAATGCTAACCCGGATTGCAAATTGGTGCTCAARGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGAGTAGGAGGACCAGGACAAAAAGCTAGACTAATGGCAGAAGCCTTGAARGAGGCGCTGACGCCAGGGCAACTCCCATTTGCAGCAGTCCAACAGAGAGGACAAAGAAAGACAATTAAATGYTGGAATTGTGGAAAGGAGGGACACTCTGCGAGACARTGCAGAGCCCCTAGAAGACAGGGMTGCTGGAAGTGTGGAAAAACAGGCCATGTTATGGCCAAATGCCCCGARAGACAGGCGGGTTTTTTAGGGCTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATACCTCAGGGGTTGACACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAGGAACTAYATGAAGATGGGCAGAAGGCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTGACGGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTTACTGCCYACATTGAAGAACAGCCCRTAGAAGTATTATTAGATACAGGGGCTGATGATTCAATYGTAGCAGGGATAGAATTGGGTCCAAATTATACCCCTAAAATAGTAGGAGGRATAGGAGGTTTCATTAACACCAAGGAATATAAAGATGTAAAAATAAAAGTCTTAGGCAARGTRATTAAGGGAACAATTATGACAGGAGATACCCCAATTAACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAAATCTCCCCATAGCTAAGGTRGAACCTATCAAAGTAACACTAAAACCAGGAAAAGATGGACCAAAATTAAGACAGTGGCCRCTATCAAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCATATAACACCCCCACATTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGGATGCTAATAGACTTTAGAGAATTAAACAAGGTTACTCAAGATTTTACAGAAGTACAGTTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGAAGGATCACAGTATTGGATGTAGGTGATGCATATTTTTCCATACCTTTAGATGAGGAATTCAGGCAATACACTGCCTTTACTTTACCATCAGTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAAGGATCACCAGCTATTTTTCAGCATACTATGAGAAATGTCTTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACCCTGATCCAATAYATGGATGACATCCTAATAGCTAGTGATAGAACAGAYTTAGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTAAACAGTATGGGATTTTCCACCCCAGAAGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAAAAAATAGAGTTGCCACARARAGAAACCTGGACARTAAATGATATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACACCTTTGCAGATTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGARAACAAGATAATTCTCAGTCAAGAACAAGAAGGGTGTTAYTATCAAGAGGGAAARCCACTGGAGGCAACAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAAGACAARATACTAAAAGTAGGCAAATTTGCAAAGATTAAGAATACACATACAAATGGAGTCAGATTATTAGCACATGTAGTACAGAAAATAGGAAAAGAAGCAATAGTAATTTGGGGACAGGTGCCAAAATTTCATYTGCCAGTAGAGAGAGAAATYTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACCAGAATGGGACTTTGTATCAACACCTCCCTTAGTCAGATTAGTCTTCAACCTAGTAAAAGAGCCTATACAGGGAGCAGAAACATTTTATGTAGATGGATCCTGTAACAGACAGTCAAAAGAAGGAAAGGCAGGCTATGTGACAGACAGAGGCAGAGACAGAACAAAACCGCTGGAACAGACTACCAATCAACAAGCAGAGYTRGAAGCCTTCCATCTAGCCTTAGCAGATTCAGGACCAAAAGCCAATATAATAGTAGACTCCCAATATGTTATGGGCATAATAGCGGGTCAACCCACTGAATCAGAAAGTAGATTAGTAAATCAGATAATAGAGGAAATGATTAAAAAGGAAGCAATTTATGTAGCGTGGGTACCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTRGATCATCTGGTRAGTCAAGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCGCAAGAAGAGCATGAGAAGTACCATAGCAATGTAAAAGAATTAGTATTCAAATTTGGATTACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAAATGTCACCAGAAAGGAGARGCCATACATGGACAAGTAAATGCAGAACTAGGGACTTGGCAAATGGACTGTACACACCTAGAGGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTCATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGCTAAAATTAGCCAGCAGATGGCCCATCACACATCTGCAYACTGATAATGGTGCCAACTTCACATCGCAAGAAGTGAAAATGGTTGCTTGGTGGGCAGGGATTGAACAGACCTTTGGGGTGCCTTATAATCCACAGAGCCAGGGAGTRGTGGAAGCAATGAACCATCATCTAAAAACCCAGATAGATAGAATYAGGGAACAGGCAAATTCAATAGARACTATAGTACTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAAATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGARTTGGATAGCGGTTCCCACTTGGAGGATACCGGGGAGGCTAGAGAAGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAAGACCTACAGAAGGCTTGTTATGTACCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGGGTRATCTTCCCATTAAGGGATGARTCTCATTTGGAAGTACAAGGATATTGGAATTTGACACCAGAGAAAGGATGGCTCAGTACTTATGCAGTGAGAATAACCTGGTACTCCAGRAATTTCTGGACAGATGTAACACCAGATTATGCAGACACTTTACTGCATGGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACGAAGGGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAGAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTGAGTCATGTCAGATCCCAGGGAGAGGRTCCCACCTGGAAACAGTGGAGAGGAAACRGTAGGCGAGGCCTTCGACTGGCTRGAAAGAACAGTAGAAGAAATAAACAGGGCAGCAGTGAATCATTTGCCGAGGGAGTTAATTTTCCAGGTTTGGCGAAGGTCCTGGGAATACTGGCATGATGAAATAGGGATGTCAGCCAGCTACACAAAATAYAGATACTTGTGCTTGATACAAAAAGCTTTGTTTATGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGGAGAGCATGGGGCAGGGGGATGGAGACCAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGACAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCGTGGGATGAATGGGTAGTAGAAGTTCTGGAGGAAGTAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATCTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAGCTCATTARAATCCTCCAGAGAGCACTCTTCATCCATTTCAGAGGTGGATGCAACCACTCCAGAATCGGCCACTCTGGAGGAGGAAATCCTCTCTCAACTATACCGCCCTCTAGAGGCGTGCTATAACAAGTGCTACTGTAAGAAGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGAATATGCTATGAGCAGCAACGAAGAAGAACTCCGAAGAAGACTAAGGCTAATACATTTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTATTAAGTGCTTTAGGGATTTCTTGTGTTCAATATGTRACAGTGTTCTATGGTRTACCAGCATGGAAGAATGCGACARTTCCCCTCTTCTGTGCAACYRAGAATAGGGAYACTTGGGGRACAACACAATGCTTGCCAGATAATGATGATTACTCAGAATTGGCAATTAATGTCACAGAGGCTTTTGATGCTTGGGATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTCAAACATCCATTAAGCCCTGTGTAAAACTTACCCCACTATGTATAGCAATGAGGTGTAATAAAACTGAAACAGATAGATGGGGCTTAACAGGAAAACCAACAACAACAGCATCAACAACAACAAAAACAACATCAAAACCATCAGTAATAACAGCAAARGTTATAAATGAAGGTGATCCATGCATAAAAAATAATAGTTGTGCAGGCTTGGAACARGARCCCATGATAGGTTGTAAATTTAACATGACAGGGTTAAGAAAGGACAAACAGAGAGAATATAATGAAACATGGTATTCAAGAGATATAGTTTGTGAACAAAATAGCAATGAAMATGAAACTGCCAGTAAATGTTATATGAACCATTGTAACACTAGTGTTATTCGAGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATATTGTGCTCCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGAACCTAACTGTACTAAGGTAGTAGTTTCTTCATGCACAAGAATGATGGAAACACAAACCTCTACTTGGTTTGGTTTCAATGGTACTAGAGCAGAAAATAGAACATACATTTATTGGCATGGTAGAAGCAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATRAGATGTAGGAGACCAGGAAATAAGACAGTCTTACCAGTCACCATTATGTCAGGGTTGGTCTTCCATTCGCAACCCATAAATGAGAGRCCAAAACAGGCCTGGTGCTGGTTTGGAGGAAACTGGAAAGGRGCYATCCGAGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATAATACTGAGAAGATTAATCTRACAGCTCCAGCAGGAGGAGATCCGGAAGTTACTTTCATGTGGACAAATTGTCGAGGAGAATTCTTATATTGCAAAATGAATTGGTTTCTYAATTGGGTAGATGAGACAARKGGTTTTAGATGGAATAADCAAAACCCGAAGGAGAAGAAAAGGAGGAATTATGTGCCATGTCATATTAGACAGGTAATYAAYACGTGGCACAGRGTAGGCAAAAATGTGTATTTGCCTCCTAGGGAAGGAGACCTGACATGTAATTCCACTGTAACTAGCCTCATAGCAGAAATAGATTGGATCGATAAAAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAGCTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGARATTACTCCAATTGGCTTGGCCCCCACAAGTGTAAGAAGGTACACCACAACCGGTGCCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCCGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACTAARAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTAAAGGATCAGGCRCATCTAAATTCATGGGGATGTGCTTTTAGGCAGGTCTGCCACACTACTGTACCATGGCCAAATGACACATTGRTGCCTAATTGGGAYAATATGACTTGGCAAGAGTGGGAAAGACAGGTTGACTTCCTAGAGGCAAAYATAACTCAATTACTRGAAGAAGCACAAATTCAGCAAGAAAAGAAYATGTATGAGTTGCAAAAATTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAARATATATACAATATGGTGTACTTATAGTTCTAGGAGTAATAGGATTAAGAATAGTGATATATGTAGTRCARATGTTAGCTAGGTTAAGACAAGGTTATAGGCCAGTGTTCTCTTCCCCTCCCGTTTATGTTCAGCAGATCCCTATCCAGAAGGGCCAGGAACCGCCAACCAAAGAAGGAGAAGAAGGAGACGGTGGAGACAGAGGTGGCAACAGATCTTGGCCTTGGCAGATAGAATAYATTCATTTCCTGATCCGCCAGCTAATACGCCTCTTGAGTTGGCTRTTCAACAGTTGCAGAGWTTGGCTATTGAGGAGCTRCCAGATCCTCCAGCCAGTGCTCCAGAGCCTCTCAAGGATACTGCAGRGAGTCCGTGAAGTCATCAGAGTTGAGATAACCTACCTACAGTATGGGTGGCGTTACTTCCAAGAAGCAGCGCAAGCRTGGTGGAAATTTGCGCGAGAGACTCTTGCAAGCGCGTGGGGAGACTTATGGGAGACTCTGGGACGGGTTGGAAGGAGATTACTCGCAATCCCAAGACGKATCAGGCAGGGGCTTGARCTCACTCTCTTGTGAGCCTCAGAAATATTGTGARGGTCAATTTATGAATACCCCTTGGAGAAACCCAAGAGCAGAAGGAGCAAAATTAGATTATAGACAACAAAACATGGATGATGTGGATGATGATGATRRTGACYTAGTAGGTTTTCCAGTGACCCCAARAGTCCCCTTRAGGACYATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGATAGGAGACATAAAATATTGAATCTGTACYTAGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACAGCAGGGCCAGGAATCAGATACCCTATGTGTTTTGGATGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCTCAGGAGGACGANNCACATTGCTTGATGCATCCAGCACAGACCTCTCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGARTTAGCTTATAACTATAAGGCATTTGTTAAGCACCCAGAAGAGTTTGGTAGTAGYTCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCCTTTTAAAAATGGCTGACAAGAAGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAAGGGGATGTTATGGGGAGGTACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTC'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVmac239cy0163', 'Virus', 'SIVmac239cy0163', 'RNA', 'SIV', 'NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCGAAAAATACTTTCGGTCTTAGCTCCATTAATGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGATCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAGCTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGAACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGATCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGACAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGATACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGAATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTGATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCCATCTTGCTTTTAAGTGTCTATGGGATCTATGGCACTCTATATGTCACAGTCTTTTATGGTGTACCAGCTTGGAGGAATGCGACAATTCCCCTCTTTTGTGCAACCAAGAATAGGGATACTTGGGGAACAACTCAGTGCCTACCAGATAATGGTGATTATTCAGAAATGGCCCTTAATGTTACAGAAAGCTTTGATGCCTGGAATAATACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTGGTACTCTGCAGATTTGGTATGTGAACAAGGGAATAACACTGGTAATGAAAGTAGATGTTACATGAACCACTGTAACACTTCTGTTATCCAAGAGTCTTGTGACAAACATTATTGGGATGCTATTAGATTTAGGTATTGTGCACCTCCAGGTTATGCTTTGCTTAGATGTAATGACACAAATTATTCAGGCTTTATGCCTAATTGTTCTAAGGTGGTGGTCTCTTCATGCACAAGGATGATGGAGACACAGACTTCTACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTGACGGCTCCTGGAGGAGGAGATCCGGAAGTTACCTTCATGTGGACAAATTGCAGAGGAGAGTTCCTCTACTGTAAAATGAATTGGTTTCTAAATTGGGTAGAAGATAGGAATACAGCTAACCAGACGTCAAAGGAACAGCATAAAAGAAATTACGTGCCATGTCATATTAGACAAATAATCAACACTTGGCATAAAGTAGGCAGAAATGTTTATTTGCCTCCAAGAGAGGGAGACCTCACGTGTAACTCCACAGTGACCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAAATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGACGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACAAAGAACCTCCAGACTAGGGTCACTGCCATCGAGAAGTACTTAAAGGACCAGGCGCAGCTGAATGCTTGGGGATGTGCGTTTAGACAAGTCTGCCACACTACTGTACCATGGCCAAATGCAAGTCTAACACCAGAGTGGAACAATGAGACTTGGCAAGAGTGGGAGCGAAAGGTTGACTTCTTGGAGGAAAATATAACAGCCCTCCTAGAGGAGGCACAAATTCAACAAGAGAGGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAGGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTGGCCTTGGCAGATAGAATATATTCATTTCCTGGTCCGTCAACTGATACGCCTCTTGACTTGGCTATTCAGCAACTGCAGAACCTTGCTATCGAGAGTATACCAGGTCCTCCAACCAATACTCCAGAGGCTCTCTGCGACCCTACAGAGGATTCGAGAAGTCCTCAGGACTGAACTGACCTACCTACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGGAAGATGATGACTTGGTAGGGGTATCAGTGAGGTCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAAATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTATTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVsmE543', 'Virus', 'SIVsmE543', 'RNA', 'SIV', 'TGGAAGGGATTTATTACAATGAGAAAAGACATAGAATATTAGATATGTACATGGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACATTAGGGCCAGGAACTAGATACCCTATGTACTTTGGGTGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCCCAGGAAGACGAGACACATTGCCTGGTGCATCCAGCACAGACTCATCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAATTGGCTTATAGCTATAAGGCATTTATTAAGTACCCAGAAGAGTTTGGTAGTAAGTCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCATTTATAAAATGGCTGACAAGAGGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAGGGACTTTCCACAAGGGGCTGTCATGGGGAGGTACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTCTCTGTATAAATACAACTGCATTTCGCTCTGTAGTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTAGAAGTAAGCAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATCTCGGTACTCGACACATAAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAGGCAGGAAAATCCCTAGCAGGTTGGCGCCCGAACAGGGACTTGAAGGAGGTGAGAGCTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACAAACCACGACGGAGAGCTCCTAGAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCAGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAAAAAGTCATAGGACTGAGTTCCCTACTTTTGAGGAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGTTACGGCCCAACGGAAAGAAAAAGTATATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTGGATAGATTTGGATTAGCAGAAAGCCTGTTGGATAACAAAGAAGGTTGTCAAAAAATTCTTTCGGTTTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTTTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTGGAAACAGGAACAGCAGACAAAATGCCAGCAACAAGCAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAAGTAGGTGGCAATTATGTCCACCTACCCTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTGGTAGAAGAGAAAAAATTTGGGGCAGAGGTAGTGCCAGGATTTCAAGCGCTATCAGAAGGCTGCACTCCCTATGACATCAATCAAATGCTAAATTGTGTAGGAGAACATCAGGCAGCCATGCAAATTATTAGAGAGATTATAAATGAAGAAGCTGCCGATTGGGATTTACAACACCCGCAGCCAGGTCCACTACCAGCAGGGCAACTTAGAGAGCCAAGAGGATCAGACATTGCAGGAACTACTAGTACAGTAGAGGAACAAATCCAATGGATGTACAGGCAACAAAACCCCATACCAGTAGGCAACATTTATAGGAGGTGGATCCAATTAGGGCTGCAGAAATGTGTAAGAATGTATAACCCAACAAACATTTTAGATGTGAAACAAGGACCAAAAGAGCCATTTCAAAGCTACGTAGATAGATTCTACAAAAGTCTAAGAGCAGAGCAAACAGACCCGGCAGTAAAGAATTGGATGACCCAAACACTGCTGATTCAAAATGCTAACCCAGATTGTAAATTGGTGCTCAAGGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGAATAGGAGGGCCAGGACAAAAAGCTAGATTAATGGCAGAAGCATTGAAAGAGGCACTGAGACCAGACCAACTCCCATTTGCAGCAGTCCAACAGAAAGGACAAAGGAGGACAATCAAGTGTTGGAATTGTGGAAAGGAGGGACACTCTGCAAGACAATGCAGGGCCCCTAGAAGACAGGGCTGCTGGGGGTGCGGAAAAACGGGTCATGTTATGGCCAAATGCCCTGAAAGACAGGCGGGTTTTTTAGGGTTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATGCCTCAGGGGCTGACACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAAGAATTACATGAAGATGGGCAGAAAGCAGAGGGAGAACAGAGAGAGACCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTCACTGCCTACATTGAAGAACAGCCCGTAGAAGTATTATTAGATACAGGGGCTGATGATTCAATTGTAACAGGGATAGAATTGGGTCCAAATTATACCCCTAAAATAGTAGGAGGAATAGGAGGCTTCATTAATACCAAAGAATATAAAGATGTGAAAATAAAAGTCTTAGGCAAGGTAATTAAGGGAACAATTATGACGGGAGATACCCCAATTAATATTTTTGGCAGAAATTTGCTAACAGCTATGGGCATGTCTTTAAATTTCCCCATAGCTAAGGTGGAGCCTATAAAAGTAACACTAAAACCAGGGAAAGAAGGACCAAAATTGAGACAGTGGCCGCTATCAAAAGAAAAGATAATTGCATTAAGAGAAATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCGTATAACACCCCCACTTTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGAATGCTAATAGATTTTAGAGAATTAAATAAGGTCACTCAAGACTTTACAGAAGTACAGTTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGGAGGATCACAGTATTGGATGTAGGTGATGCATATTTCTCCATTCCTCTAGATGAAGAATTCAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAACCAGGAAAAAGATACATCTATAAGGTATTACCTCAAGGGTGGAAGGGGTCACCAGCTATTTTTCAGTATACTATGAGAAATGTATTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACCCTGATCCAATACATGGATGACATCTTAATAGCTAGTGATAGAACAGATTTAGAGCATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTGAACGGCATAGGATTCTCCACCCCAGAAGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAGAAAATAGAGTTGCCACAAAGAGAGACCTGGACAGTAAATGACATACAAAAATTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACATCTTTGCAGACTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAACAAGATAATTCTCAGTCAAGAACAAGAAGGATGTTACTACCAAGAGGGAAAACCAATAGAGGCAACAGTAATAAAGAGTCAGGATAATCAGTGGTCATATAAAATTCACCAAGAAGACAAAGTACTAAAAGTGGGCAAATTTGCAAAGGTTAAAAATACACATACAAATGGAGTCAGATTACTAGCACATGTAGTGCAGAAAATAGGAAAGGAGGCACTAGTAATTTGGGGAGAGGTGCCAAAATTCCATTTGCCAGTAGAAAGAGAAATTTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACCAGATTGGGACTTTGTGTCAACACCTCCCTTAGTCAGATTAGTCTTCAACCTAGTAAAAGAGCCTATACAGGGAGCAGAAACATTTTACGTAGATGGATCCTGTAATAGGCAGTCAAGAGAAGGAAAAGCAGGCTATGTGACGGATAGGGGCAGAGACAAAGCAAAACTTTTAGAACAGACTACCAACCAACAAGCAGAGTTGGAAGCCTTCTATCTAGCCTTAGCAGATTCGGGACCAAAAGCAAATATTATAGTAGATTCCCAATATGTTATGGGCATAGTAGCAGGTCAGCCCACTGAATCAGAAAGTAGGTTAGTAAACCAGATAATAGAAGAGATGATTAAAAAGGAAGCAATTTATGTAGCATGGGTACCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTAGATCACCTGGTTAGCCAGGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCACAAGAAGAGCATGAAAAGTACCATAGCAATGTAAAAGAATTGGTATTCAAATTTGGTATACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAGATGCCACCAGAAAGGAGAAGCCATACATGGGCAAGTAAATGCAGAACTAGGGACTTGGCAAATGGACTGTACGCACCTAGAAGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTTATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGTTAAAGCTAGCTGGCAGATGGCCCATCACACATCTGCATACTGATAATGGTGCCAATTTCACATCACAAGAAGTGAAAATGGTTGCCTGGTGGGCAGGGATTGAACAGACCTTTGGAGTGCCTTATAATCCACAGAGCCAAGGAGTAGTGGAAGCAATGAACCATCATTTAAAAACCCAGATAGATAGAATTAGAGAACAAGCAAACTCAGTAGAGACTATAGTACTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGACCAGCTGTGGAGAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAGATTAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGAATTGGATAGTGGTTCCCACTTGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAGGACCTACAGATGGCTTGCTATGTGCCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGAGTAATTTTCCCATTAAGGGATAAGACTCATTTGGAAGTACAAGGATATTGGAATTTGACACCAGAAAAAGGATGGCTCAGTACTCATGCAGTAAGAATAACCTGGTACTCCAGAAATTTCTGGACAGATGTAACACCAGATTGTGCAGACACTTTACTGCATAGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACAAAGAGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAAAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTAAGTCATGTCAGATCCCAGAGAGAGGATCCCACCTGGAAACAGTGGAGAGGAAACAATAGAAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAAGGAATAAACAGGGCAGCAGTAAATCACCTGCCGAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCCTGGGAATACTGGCATGATGAAATGGGAATGTCAGAAAGCTACACAAAATATAGATACTTGTGCTTGATACAGAAAGCTCTGTTTATGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGAAGGGCATGGGGCAGGGGGATGGAGAACAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGGCAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCATGGGATGAATGGGTAGTGGAAGTTCTGGAGGAAATAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATTTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAACTCATTAGAATCCTACAGAGAGCACTCTTCATCCATTTCAGAAGTGGATGTGCCCACTCCAGAATCGGCCAATCTAGAGGAGGAAATCCTCTCTCAACTATACCGCCCTCTAGAGCCATGCTATAACAAGTGCTACTGTAAGAGGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGAATATGCTATGAGCAGCACCGAAGAAGAACTCCGAAAAAGACTAAGACTAATCCACTTCCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTAGTAAGTGTTTTAGAGATTTGTTGTGTTCAATATGTAACAGTATTCTATGGTGTACCAGCATGGAAGAATGCGACAATTCCCCTCTTCTGTGCAACCAGGAATAGGGACACTTGGGGAACAACACAATGCTTGCCTGATAATGATGATTACTCAGAATTGGCAGTCAATATCACAGAGGCTTTTGATGCTTGGAATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTGAAACATCCATTAAGCCCTGTGTAAAACTTACCCCACTATGTATAGCAATGAGATGTAATAAAACTGAGACAGATAGGTGGGGTTTGACAGGAAGAGCAGAGACAACAACAACAGCGAAATCAACAACATCAACAACAACAACAACAGTAACACCAAAGGTTATAAATGAAGGTGATTCTTGCATAAAAAATAATAGTTGTGCAGGCTTGGAACAGGAGCCCATGATAGGTTGTAAATTTAACATGACAGGGTTAAAGAGGGACAAAAAGATAGAATATAATGAAACATGGTATTCAAGAGATTTAATCTGTGAGCAGCCAGCAAATGGAAGTGAGAGTAAATGTTACATGCAGCATTGTAACACCAGTGTTATTCAGGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATACTGTGCACCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGCTCCTAAATGTTCTAAGGTAGTGGTTTCTTCATGCACAAGAATGATGGAGACGCAAACCTCTACTTGGTTTGGCTTCAATGGTACTAGGGCAGAAAATAGAACATACATTTATTGGCATGGCAATAGTAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCAGGGTTGGTCTTCCATTCGCAACCCATAAATGAGAGACCAAAACAGGCCTGGTGCCGGTTTGGAGGAAACTGGAGCGAGGCCATCCAGGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATGATACTAGGAAAATTAATCTAACAGCTCCAGCAGGAGGAGATCCAGAAGTCACTTTTATGTGGACAAATTGTCGAGGAGAATTCTTATACTGCAAAATGAATTGGTTTCTCAATTGGGTAGAGGACAGAGACCAAAATAGTAACAGATGGAAACAACAAAAGAAGCCAGAGCAACAGAAGAGAAATTATGTGCCATGTCATATTAGACAAATAATCAACACGTGGCACAAAGTAGGCAAAAATGTATATTTGCCTCCTAGGGAAGGAGACCTGACATGTAATTCCACTGTAACTAGTCTCATAGCAGAGATAGATTGGATCAATAACAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGAGATTACTCCAATTGGCTTGGCCCCCACAGATGTAAGAAGGTACACCACAACTGGTGCCTCAAGAAATAAGAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCGACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCGGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACATGAATTGTTGCGACTGACCGTCTGGGGAACTAAGAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTGAAGGATCAGGCGCAGCTAAATTCATGGGGATGTGCTTTTAGGCAAGTCTGTCACACTACTGTACCATGGCCAAATGACTCATTGGTGCCTAATTGGGACAATATGACTTGGCAAGAGTGGGAAGGAAAGGTTGACTTCCTAGAGGCAAATATAACTCAATTATTAGAAGAAGCACAAATTCAGCAAGAAAAGAATATGTATGAATTGCAAAAACTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAAGATATATACAATATGGTGTACTAATAGTTTTAGGAGTAGTAGGGTTAAGAATAGTAATATATGTAGTGCAAATGCTAGCTAGGTTAAGACAGGGTTATAGGCCAGTGTTCTCTCCCCCTCCCGCTTATGTTCAGCAGATCCCTATCCACAAGGACCAGGAACCGCCAACCAAAGAAGGAGAAGAAGGAGAAGGTGGAGACAGAGGTGGCAGCAGATCTTGGCCTTGGCAGATAGAATATATTCATTTCCTAATCCGCCAACTGATACGCCTCTTGACTTGGCTATTCAGCAGCTGCAGGGATTGGCTATTGAGGATCTACCAGATCCTCCAACCAGTGCTCCAGAGACTCTCAAGGACGCTGCAAAGAGTTCGTGAAGTCATCAGAATTGAAATAACCTACCTACAATATGGGTGGAGCTATTTCCAAGAAGCAGCACAGGCGTGGTGGAAATTTGCGCGAGAGACTCTTGCGAGCGCGTGGAGAGACATATGGGAGACTCTGGGAAGGGTTGGAAGAGGGATACTCGCAATCCCTAGGCGCGTCAGGCAAGGGCTTGAGCTCGCTCTCTTGTGAGCCTCAGAAATATAGTGAGGGACAATATATGAATACCCCCTGGAGGAACCCAACAGCAGAAAAAGCAAAATTAGGTTATAAACAACAAAACATGGATGATGTGGATGATGAAGATGATGACTTAGTAGGTGTCTCAGTGCACCCAAAAGTCCCCTTAAGGGCCATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAATGAGAAAAGACATAGAATATTAGATATGTACATGGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACATTAGGGCCAGGAACTAGATACCCTATGTACTTTGGGTGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCCCAGGAAGACGAGACACATTGCCTGGTGCATCCAGCACAGACTCATCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAATTGGCTTATAGCTATAAGGCATTTATTAAGTACCCAGAAGAGTTTGGTAGTAAGTCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCATTTATAAAATGGCTGACAAGAGGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAGGGACTTTCCACAAGGGGCTGTCATGGGGAGGTACTGGGGAGGAGCTGGCTGGAACGCCCACTTATTCTCTGTATAAATACAACTGCATTTCGCTCTGTAGTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGGCTCCACGCTTGCTTGCTTAAAGACCTCTTCAATAAAGCTGCCATTTAGAAGTAAGCAAGTGTGTGTTCCCATCTCTCCTAGTCGCCGCCTGGTCATCTCGGTACTCGACACATAAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAGGCAGGAAAATCCCTAGCA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SIVsmE041-2', 'Virus', 'SIVsmE041-2', 'RNA', 'SIV', 'ACAGGGACTTGAAGGAGAGTGAGAGCTCCTGAGTACGGCTGAGTGAAGGCAGYAAGGGCGGCAGGAAYAAACCACGACGGAGTGCTCCTATAAAGGCGCGGGCCGGTACCAGGCGGCGTGAGGAGCGGGAGTCGGAGAGGCCTCCGGTTGCAGGTAAGTGCAACAAAAGAGTCATAGGACTGAGTTCCCTACTTTTGAGRAAAGAGTAGGAGAGTGGGAGATGGGCGCGAGAARCTCCGTCTTGTCAGGGAAAAAAGCAGATGAATTAGAAAAAATTAGGTTACGGCCCGGCGGAAAGAAAAAGTACATGCTGAAGCATGTAGTGTGGGCAGCAAACGAATTGGACARATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGTTGTCAAARAATTCTTTCAGTYTTAGCTCCATTAGTTCCGACAGGTTCAGAAAATTTAAAGAGCCTYTATAATACTGTCTGCGTCATTTGGTGCATTCACGCAGAAGAGAAAGTGAAACATACTGAGGAAGCAAAACAAATAGTGCAGAGACATCTAGTGGTGGAAACAGGAACAGCAGACAAAATGCCAGCAACAAGTAGACCAACAGCACCACCTAGTGGCAGAGGAGGAAATTACCCAGTGCAGCAAGTAGGTGGCAATTATACCCACCTACCCTTAAGTCCAAGAACATTAAATGCTTGGGTAAAATTGRTAGAAGAGAAAAAATTTGGGGCAGAAGTAGTGCCAGGATTTCARGCACTATCAGAAGGCTGCACYCCCTATGACATCAATCAGATGCTAAATTGTGTRGGGGAACAYCAATCAGCCATGCAAATTATTAGAGAAATTATAAATGAAGAAGCTGCTGATTGGGATTTACAACACCCGCAGCCAGGTCCAATACCAGCAGGACARCTTAGAGATCCGAGAGGATCAGACATTGCAGGAACTACTAGCACAGTAGAAGAACAAATTCAATGGATGTATAGGCAGCAAAACCCTATACCAGTAGGTAACATTTACAGAAGGTGGATCCAATTAGGGCTGCAAAAATGTGTAAGGATGTATAATCCAACAAACATTTTAGATGTGAAACARGGACCRAAAGAGCCATTTCAAAGCTATGTAGATAGATTCTACAAGAGTCTAAGAGCAGAACAAACAGACCCAGCAGTGAAAAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCGGATTGCAAATTGGTGCTCAAGGGTCTGGGTATGAATCCCACTTTAGAAGAAATGCTGACAGCCTGTCAGGGARTAGGAGGACCAGGACAAAAAGCTAGACTAATGGCAGAAGCCTTGAAAGAGGCACTGACGCCAGGACAACTCCCATTTGCAGCAGTCCAACAGAGAGGACAAAGAAAGACAATTAAATGYTGGAATTGTGGAAAGGAGGGACACTCTGCGAGACAATGCAGAGCCCCTAGAAGACAGGGCTGCTGGAAGTGTGGARAAACAGGCCATGTTATGGCCAAATGCCCCGAGAGACAGGCGGGTTTTTTAGGGCTTGGCCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCCCAGATACCTCAGGGGTTGACACCAACTGCTCCCCCAGAGGATCCAGCTGTGGATCTACTGAAGAATTACATGAGGATGGGCAGAAGGCAGAGGGARAACAGAGAGAGACCTTACAAGGARGTGACGGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGAAGACCAGTAGTTACTGCCTACATTGAAGAACAGCCCGTAGAAGTATTATTAGATACAGGGGCTGATGATTCAATYGTAGCAGGGATAGAATTGGGTCCAAATTATACCCCTAAAATAGTAGGAGGRATAGGAGGTTTCATTAACACCAAGGAATATAAAGATGTAAAAATAAAAGTCTTAGGCAARGTAATTAAGGGAACAATTATGACAGGAGATACCCCAATTAACATTTTTGGCAGAAATCTGCTAACAGCTATGGGCATGTCTCTAAATCTCCCCATAGCTAAGGTGGAACCTATCAAAGTAACACTAAAACCAGGAAAAGATGGACCAAAATTAAGACAGTGGCCGCTATCAAAAGAAAAGATAATTGCATTAAGRGAGATCTGTGAAAAAATGGAAAAAGATGGCCAGTTAGAGGAAGCCCCTCCAACCAATCCATATAACACCCCCACATTTGCTATAAAGAAGAAAGACAAAAATAAATGGAGGATGCTAATAGACTTTAGAGAATTAAACAAGGTTACTCAAGATTTTACAGAAGTACAGYTAGGAATACCACACCCTGCAGGACTAGCAAAGAGAAGAAGGATCACAGTATTGGATGTAGGTGATGCATATTTCTCCATACCTTTAGATGAGGAATTCAGGCAATACACTGCCTTTACTTTACCATCAGTAAACAATGCAGAACCAGGAAAAAGATACATCTATAAGGTAYTACCTCAAGGGTGGAAAGGATCACCAGCTATTTTTCAGCATACYATGAGAAATGTCTTAGAACCTTTCAGAAAAGCAAATCCAGATGTGACMCTGATCCAATACATGGATGAYATCCTAATAGCTAGTGAYAGAACAGATTTAGAACATGACAGGGTAGTTTTACAGTTAAAGGAACTTCTAAACAGTATGGGATTTTCCACCCCAGAAGAGAAGTTCCAGAAAGATCCCCCATTCCAGTGGATGGGATATGAATTGTGGCCAACCAAATGGAAACTGCAAAAAATAGAGTTGCCACAAAGAGAAACCTGGACAGTAAATGATATACAAAARTTAGTAGGAGTGCTAAATTGGGCAGCACAAATTTATCCAGGAATAAAGACTAAACACCTTTGCAGATTAATCAGAGGAAAAATGACTTTAACAGAAGAGGTTCAGTGGACTGAGATGGCAGAGGCAGAATATGAAGAAAAYAAGATAATTCTCAGTCAAGAACAAGAAGGGTGTTACTATCAAGAGGGAAAGCCACTGGAGGCAACAGTAATAAAGAGTCAGGATAATCAATGGTCATATAAAATTCACCAAGAAGACAAAATACTAAAAGTAGGCAAATTTGCAAAGATTAAGAATACACATACAAATGGAGTCAGATTATTAGCACAYGTAGTACAGAAAATAGGAAAAGAAGCAATAGTAATCTGGGGACAGGTGCCAAAATTTCATTTGCCAGTAGAGAGAGAAATCTGGGAACAATGGTGGACAGATTATTGGCAAGTAACCTGGATACCAGAATGGGACTTTGTATCAACACCTCCCTTAGTCAGAYTAGTCTTCAACCTAGTAAAAGAACCTATACAGGGAGCAGAAACATTTTATGTAGATGGATCCTGTAACAGACAGTCAAAAGAAGGAAAGGCAGGCTATGTGACAGACAGAGGYAGAGACAGAACAAAACYGCTGGAGCAGACTACCAATCAACAAGCGGARTTGGAAGCCTTCTATCTAGCCTTAGCAGATTCAGGACCARAAGCAAATATAATAGTRGATTCCCAATATGTTATGGGCATAATAGCGGGTCAACCCACKGAATCAGAAAGTAGATTAGTAAATCAGATAATAGAGGAAATGATTAAAAAGGAAGCAATTTATGTAGCRTGGGTACCTGCACATAAAGGAATAGGAGGAAATCAAGAAGTAGATCATCTGGTWAGTCAAGGAATTAGACAAGTCCTATTCTTAGAAAAAATAGAACCAGCGCAAGAAGAGCATGAGAAGTACCATAGCAATGTAAAAGARTTAGTATTCAAATTTGGCTTACCTAGGCTAGTAGCAAAACAGATAGTAGACACATGTGATAAATGTCATCAGAAAGGAGAAGCCATACATGGACAGGTAAATGCAGAATTAGGGACTTGGCAAATGGACTGTACACATCTAGAGGGCAAAATAATTATAGTTGCAGTACATGTGGCTAGTGGATTCATAGAGGCAGAAGTAATCCCGCAGGAAACAGGAAGACAAACAGCACTGTTTCTGCTAAAATTAGCCAGCAGATGGCCCATCACACATCTGCATACTGATAATGGTGCCAATTTCACATCGCAAGAAGTGAAAATGGTTGCTTGGTGGGCAGRGATTGAACAGACCTTTGGGGTACCTTATAATCCACAGAGCCARGGAGTAGTGGAAGCAATGAACCATCATCTAAAAACCCAGATAGATAGGATTAGGGAACAGGCAAATTCAATAGAGACTATAGTACTAATGGCAGYTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAGTCAATATGATCACCACAGAACAAGAAATACAATTCCAACAATCAAAAAATTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAGCTGTGGAAAGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCCTAAAGGTAGGGACAGAAATCAAGGTAGTACCAAGGAGGAAAGCTAAAATTATCAAAGACTATGGAGGAGGAAAAGAGTTGGATAGCGGTTCCMACTTGGAGGATACCGGGGAGGCTAGAGAAGTGGCATAGCCTCATCAAACACCTGAAATATAACACTAAAGACCTACAGAAGGCTTGTTATGTACCCCATCATAAAGTTGGATGGGCATGGTGGACTTGCAGCAGGGTAATCTTCCCATTAAGGGATGAGTCTCATTTGGAAGTACAAGGATATTGGAGTTTGACACCAGAGAARGGRTGGCTCAGTACTTATGCAGTRAGRATAACCTGGTACTCCAGAAATTTCTGGACAGATGTAACACCAGATTAYGCAGACACTTTACTGCATGGCACTTATTTCCCTTGCTTTTCAGAGGGAGAAGTACGAAGGGCCATCAGGGGAGAGAAATTGCTGTCTTGCTGCAAGTTCCCGAAAGCTCATAAGAATCAGGTACCAAGCCTACAGTATCTAGCACTAACAGTAGTGAGTCATGTCAGATCCCAGGGAGAGGATCCCACCTGGAAACAGTGGAGAGGAAACAGTAGGCGAGGCCTTCGACTGGCTAGAAAGAACAGTAGAAGAAATAAACAGGGCAGCAGTGAATCATTTGCCGAGGGAGTTAATTTTCCAGGTTTGGCGAAGGTCCTGGGAATACTGGCATGATGAAATAGGGATGTCAGCTAGTTACACAAAATACAGATACTTGTGCTTGATACAAAAAGCTTTGTTTATGCATTGCAAGAAAGGGTGTAGGTGCTTAGGAGGAGAGCATGGGGCAGGGGGATGGAGATCAGGGCCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAAATGACAGAAAGACCTCCAGAAGATGAAGCCCCACAGAGGGAACCGTGGGATGAATGGGTAGTAGAAGTTCTGGAGGAAGTAAAAGAAGAAGCCCTGAAACATTTTGATCCTCGCTTGCTAACTGCGCTTGGTAACTATATCTATGATAGACATGGAGACACCCTTGAAGGAGCAGGAGAGCTCATTAGAATCCTCCAGAGAGCACTCTTCATCCATTTCAGAGGTGGATGCAACCACTCCAGAATCGGCCACTCTGGAGGAGGAAATCCTCTCTCAACTATACCGCCCTCTAGAGGCGTGCTATAACAAGTGCTACTGTAAGAAGTGTTGCTATCATTGTCAGCATTGTTTTCTTAAAAAGGGTTTGGGARTATGCTATGAGCAGCAACGAAGAAGAACTCCGAAGAAGACTAAGGCTAATACATTTTCTGCATCAAACAAGTAAGTATGGGATGTCTTGGGAATCAGCTGCTTATCGCGCTCTTGCTATTAAGTGCTTTAGGGATTTCTTGTGTTCAATATGTGACAGTGTTCTATGGTATACCAGCATGGAAGAATGCGACAGTTCCCCTCTTCTGTGCAACTGAGAATAGGGACACTTGGGGAACAACACAATGCTTGCCAGATAATAATGATTACTCAGAATTGGCAATTAATGTCACAGAGGCTTTTGATGCTTGGGATAATACAGTCACAGAACAAGCAATAGAGGATGTGTGGAACCTCTTTGAAACATCCATTAAGCCCTGTGTAAAACTCACCCCCCTATGTATAGCAATGAGGTGTAATAAAACTGAGACAGATAGATGGGGCCTAACAGGAAAACCAGTAACAACGACAACATCAACAACAACAAAATCAACATCAAAACCACCAGCATTAACAGCAAAGGTTATAAATGAAAATGATCCATGTATAARAACTGATAATTGTGCAGGCTTGGAACAGGAGCCCATGATAAGTTGTAAATTTAACATGACAGGGTTAAKAAGGGACAAAAAGAAAGAATATAATGAAACATGGTATTCAAGAGATATAGTTTGTGAACAAAATAACAATGGAAATGAAAATGAAAGTAAATGCTATATGAACCATTGTAACACTAGTGTTATTCAAGAATCCTGTGACAAGCATTATTGGGATGCTATTAGATTTAGATATTGTGCTCCGCCAGGTTATGCTTTGCTTAGGTGTAATGATTCAAATTATTCAGGCTTTGAACCTAACTGTACTAAGGTAGTAGTTTCTTCATGCACAAGAATGATGGAAACACAAACCTCTACTTGGTTTGGTTTCAATGGTACTAGAGCAGAAAATAGAACATACATTTATTGGCATGGCAGAAGCAATAGAACCATAATTAGCTTAAATAAGTATTATAATCTAACAATGAGCTGTAGGAGACCAGGAAAAAAGATAGTCTTACCAGTCACCATTACGTCAGGGTTGATCTTCCATTCGCAAACCATAAATAAGAGGCCAAAACAGGCCTGGTGCTGGTTTRGRGGARAYTGGAAAGGGGCYATCCGAGAAGTGAAGGAAACCTTGGTCAAACATCCCAGGTATACGGGAACTAATGATACTRAGMARATTAATCTAACAGCTCCAGSAGGAGGAGATCCRGAAGTTACTTTCATGTGGACAAATTGTCGAGGAGAATTCTTATATTGCAAAATGAATTGGTTTCTTAATTGGGTAGATGAGACAAATGGTTTTAGATGGNNNNNNCAAAAMCMGAAGGAGAAGAAAAGGAGGAATTATGTGCCATGTCATATTAGACAGGTAATCAAYACGTGGCACAGRGTAGGCAAAAATGTGTATTTGCCTCCTAGGGAAGGAGAYYTGACATGTAATTCCACTGTAACTAGCCTCATAGCAGAAATAGATTGGATCGATAAAAATGAGACCAATATCACCATGAGTGCAGAGGTGGCAGAGCTGTATCGATTGGAGTTGGGAGATTACAAATTAGTAGAGATTACTCCAATTGGCTTGGCCCCCACAAGTGTRAGAAGGTACACCACAACCGGTGCCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCRACAGCAGGTTCTGCAATGGGCGCGGCGTCGCTGACGCTGTCGGCTCAGTCCCGGACTTTGTTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGATGTGGTCAAGAGACAACAAGAATTGTTGCGACTGACCGTCTGGGGAACTAAGAACCTCCAGACTAGAGTCACTGCTATCGAGAAGTACCTAAAGGATCAGGCGCATCTAAATTCATGGGGATGTGCTTTTAGGCAGGTCTGCCACACTACTGTACCATGGCCAAATGACACATTGATGCCTAATTGGGACAATATGACTTGGCAAGAGTGGGAAAGACAGGTTGACTTCCTAGAGGCAAATATAACTCAATTACTGGAAGAAGCACAAATTCAGCAAGAAGAGAACATGTATGAGTTGCAAAAATTAAATAGCTGGGATATCTTTGGCAATTGGTTTGACCTTACTTCTTGGATAAAATATATACAATATGGTGTACTTATAGTTTTAGGAGTAATAGGATTAAGAATAGTAATATATGTAGTGCAGATGTTAGCTAGGTTAAGACAGGGTTATAGGCCAGTGTTCTCTTCCCCTCCCGTTTATGTTCAGCAGATCCCTATCCAGAAGGGCCAGGAACCGCCAACCAAAGAAGGAGAAGAAGAAGACGGTGGAGGCAGAGGTGGCAACAGATCTTGGCCTTGGCAGATAGAATATATTCATTTCCTGATCCGCCAGCTAATACGCCTCTTGACTTGGCTATTCAACAGTTGCAGAGATTGGCTATTGAGGAGCTGCCAAATCCTCCAGCCAGTGCTCCAGAGCCTCTCAAGGACATTGCAGAGAGTCCGTGAAGTCATCAGGGTAGAGATAGCCTACCTACAGTATGGGTGGCGTTACTTCCAAGAAGCAGCGCAAGCATGGTGGAAATTTGCGCGAGAGACTCTTGCAAGCGCGTGGAGAGACTTATGGGAGACTCTGGGACGGGTTGGAAGGGGAATACTCGCAATCCCAAGACGTATCAGGCAAGGGCTTGAGCTCACTCTCTTGTGAGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAACCCAACAGCAGAAAGAGCAAAATTAGATTATAGACAACAAAACATGGATGATGTGGATGATGATGANNNARTAGGYTTTCCAGTGACCCCAAGAGTCCCCTTAAGGACTATGACATACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGATAGGAGACATAGAATATTGAATCTGTACTTAGAAAAGGAAGAAGGAATAATACCAGATTGGCAAAATTACACAGCAGGGCCAGGAATCAGATACCCTATGTGCTTTGGATGGCTCTGGAAATTAGTCCCAGTAGATGTCTCAGATGAAGCTCAGGAGGACGAGGCACATTGCTTGATGCATCCAGCACAGACCTCTCAGTGGGATGACCCCTGGGGAGAGGTACTGGCATGGAAGTTTGATCCAGAGTTAGCTTATAACTATATGGCATTTGTTAAGCACCCAGAAGAGTTTGGTAGTAGATCAGGCTTGTCAGAGGAAGAGGTAAAGAGAAGGCTAACCGCAAGAGGCCTTTTAAAAATGGCTGACAAGAAGGAAACAAGCTGAGACAGCAGGGACTTTCCACAAAGGGGATGTTATGGGGAGGTACTGGGGAGGAACTGGCTGGAACGCCCACTTAT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_NA', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGAGTTTAAAATGAATCCAAATCAAAAAATAATAACCATTGGATCAATCAGTATAGCAATCGGAATAATTAGCCTAATGTTGCAAATAGGAAACATTATTTCAATATGGGCTAGTCACTCAATCCAAACTGGAAGTCAAAACCACACTGGAGTATGCAACCAAAGAATCATCACATATGAAAACAGCACCTGGGTGAATCACACATATGTTAATATTAACAACACCAATGTTATTGCTGGAAAGGACAAAACTTCAGTGACATTGGCCGGCAATTCATCTCTTTGTTCTATCAGTGGATGGGCTATATACACAAAAGACAACAGCATAAGAATTGGTTCCAAAGGAGATGTTTTTGTCATAAGAGAGCCTTTCATATCATGTTCTCACTTGGAATGCAGAACCTTTTTTCTGACCCAAGGTGCTCTATTAAATGACAAACATTCAAATGGGACCGTTAAGGACAGAAGTCCCTATAGGGCTTTAATGAGCTGTCCTCTAGGTGAAGCTCCGTCCCCATACAATTCAAAGTTTGAATCAGTTGCTTGGTCAGCAAGCGCATGCCATGATGGCATGGGCTGGTTAACAATCGGAATTTCTGGTCCAGACAATGGAGCAGTGGCTGTACTAAAATACAACGGCATAATAACTGAAACCATAAAAAGTTGGAAAAAGCAAATATTAAGAACACAAGAGTCTGAATGTGTCTGTGTGAACGGGTCATGTTTCACCATAATGACCGATGGCCCGAGTAATGGGGCCGCCTCGTACAAAATCTTCAAGATCGAAAAGGGAAAGGTTACTAAATCAATAGAGTTGAATGCACCCAATTTTCATTATGAGGAATGTTCCTGTTACCCAGACACTGGCACAGTGATGTGTGTATGCAGGGACAACTGGCATGGTTCAAATCGACCCTGGGTGTCTTTTAATCAAAACCTGGATTATCAAATAGGATACATCTGCAGTGGGGTGTTCGGTGACAATCCGCGTCCCAAAGATGGAGAGGGCAGCTGTAATCCAGTGACTGTTGATGGAGCAAACGGAGTAAAGGGGTTTTCATACAAATATGGTAATGGTGTTTGGATAGGAAGGACTAAAAGTAACAGACTTAGAAAGGGGTTTGAGATGATTTGGGATCCTAATGGATGGACAGATACCGACAGTGATTTCTCAGTGAAACAGGATGTTGTGGCAATAACTGATTGGTCAGGGTACAGCGGAAGTTTCGTTCAACATCCTGAGTTAACAGGATTGGACTGTATAAGACCTTGCTTCTGGGTTGAGTTAGTCAGAGGACTGCCAAAAGAAAATACAACAATCTGGACTAGTGGGAGCAGCATTTCTTTTTGTGGCGTAAATAGTGATACTGCAAACTGGTCTTGGCCAGACGGTGCTGAGTTGCCGTTTACCATTGACAAGTAGTTCGTTGAAAAAACTCCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_M', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGTAGATATTGAAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATCCCTTCAGGCCCCCTCAAAGCCGAGATCGCACAGAGACTTGAAGATGTCTTTGCTGGAAAGAATACCGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCGATCCTGTCACCTCTGACTAAGGGGATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTTAATGGGAATGGGGATCCAAATAATATGGACAGAGCAGTTAAACTGTATCGAAAGCTTAAGAGGGAGATAACATTCCATGGGGCCAAAGAAATAGCACTCAGTTATTCTGCTGGTGCACTTGCCAGTTGTATGGGACTCATATACAACAGGATGGGGGCTGTGACCACCGAATCAGCATTTGGCCTTATATGTGCAACCTGTGAACAGATTGCCGACTCCCAGCATAAGTCTCATAGGCAAATGGTAACAACAACCAATCCATTAATAAGACATGAGAACAGAATGGTTCTGGCCAGCACTACAGCTAAGGCTATGGAGCAAATGGCTGGATCGAGTGAACAAGCAGCTGAGGCCATGGGAGGTTGCTAGTCAGGCCAGGCAGATGGTGCAGGCAATGAGAGCCATTGGGACTCATCCTAGCTCTAGCACTGGTCTGAAAAATGATCTCCTTGAAAATTTGCAGGCCTATCAAAAACGAATGGGGGTGCAGATGCAACGATTCAAGTGATCCTCTTGTTGTTGCCGCAAGTATAATTGGGATTGTGCACCTGATATTGTGGATTATTGATCGCCTTTTTTCCAAAAGCATTTATCGTATCTTTAAACACGGTTTAAAAAGAGGGCCTTCTACGGAAGGAGTACCAGAGTCTATGAGGGAAGAATATCGAGAGGAACAGCAGAATGCTGTGGATGCTGACGATGGTCATTTTGTCAGCATAGAGCTGGAGTAAAAAACTACCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_173_2001_NS', 'Virus', 'A_Kawasaki_173_2001', 'RNA', 'Influenza A', 'AGCAAAAGCAGGGTGGCAAAGACATAATGGATTCCCACACTGTGTCAAGCTTTCAGGTAGATTGCTTCCTTTGGCATGTCCGCAAACAAGTTGCAGACCAAGGTCTAGGCGATGCCCCCTTCCTTGATCGGCTTCGCCGAGATCAGAAGTCTCTAAAGGGAAGAGGCAGCACTCTCGGTCTGAACATCGAAACAGCCACTTGTGTTGGAAAGCAAATAGTAGAGAGGATTCTGAAAGAAGAATCCGATGAGGCATTTAAAATGACCATGGCCTCCGCACTTGCTTCGCGGTACCTAACTGACATGACTATTGAAGAAATGTCAAGGGACTGGTTCATGCTCATGCCCAAGCAGAAAGTGGCTGGCCCTCTTTGTGTCAGAATGGACCAGGCGATAATGGATAAGAACATCATACTGAAAGCGAATTTCAGTGTGATTTTTGATCGGTTGGAGAATCTGACATTACTAAGGGCTTTCACCGAAGAGGGAGCAATTGTTGGCGAAATTTCACCATTGCCTTCTCTTCCAGGACATACTAATGAGGATGTCAAAAATGCAATTGGGGTCCTCATCGGGGGACTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGTAATGAGACTGGGGGACCTCCATTCACTCCAACACAGAAACGGAAAATGGCGGGAACAATTAGGTCAGAAGTTTGAAGAAATAAGATGGCTGATTGAAGAAGTGAGGCATAAATTGAAGACGACAGAGAATAGTTTTGAGCAAATAACATTTATGCAAGCATTACAGCTATTGTTTGAGGTGGAACAAGAGATTAGAACGTTTTCGTTTCAGCTTATTTAATGATAAAAAACACCCTTGTTTCTACT'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_HA', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGAAAGTAAAACTACTGGTCCTGTTATGCACATTTACAGCTACATATGCAGACACAATATGTATAGGCTACCATGCTAACAACTCGACCGACACTGTTGACACAGTACTTGAAAAGAATGTGACAGTGACACACTCTGTCAACCTGCTTGAGAACAGTCACAATGGAAAACTATGTCTATTAAAAGGAATAGCCCCACTACAATTGGGTAACTGCAGCGTTGCCGGGTGGATCTTAGGAAACCCAGAATGCGAATTACTGATTTCCAAGGAGTCATGGTCCTACATTGTAGAAAAACCAAATCCTGAGAATGGAACATGTTACCCAGGACATTTCGCTGACTATGAGGAACTGAGGGAGCAATTGAGTTCAGTATCTTCATTTGAGAGGTTCGAAATATTCCCCAAAGAAAGCTCTTGGCCCAACCACACCGTAACCGGAGTGTCAGCATCATGCTCCCATAATGGGGAAAACAGTTTTTACAGAAATTTGCTATGGCTGACGGGGAAGAATGGTTTGTACCCAAACCTGAGCAAGTCCTATGCAAACAACAAAGAAAAAGAAGTCCTTGTACTATGGGGTGTTCATCACCCGCCAAACATAGCTGACCAAAAGACCCTCTATCATACAGAAAATGCTTATGTTTCTGTAGTGTCTTCACATTATAGCAGAAAATTCACCCCAGAAATAGCCAAAAGACCCAAAGTAAGAGATCAAGAAGGAAGAATCAACTACTACTGGACTCTGCTTGAACCCGGGGATACAATAATATTTGAGGCAAATGGAAATCTAATAGCGCCAAGATATGCTTTCGCACTGAGTAGAGGCTTTGGATCAGGAATCATCAACTCAAATGCACCAATGGATAAATGTGATGCGAAGTGCCAAACACCTCAAGGAGCTATAAACAGCAGTCTTCCTTTCCAGAACGTACACCCAGTCACAATAGGAGAGTGTCCAAAGTATGTCAGGAGTGCAAAATTAAGGATGGTTACAGGACTAAGGAACATCCCATCCATTCAATCCAGAGGTTTGTTTGGAGCCATTGCCGGTTTCATTGAAGGGGGGTGGACTGGAATGGTAGATGGTTGGTATGGTTATCATCATCAGAATGAGCAAGGATCTGGCTATGCTGCAGATCAAAAAAGCACACAAAATGCCATTAATGGGATTACAAACAAGGTGAATTCTGTAATTGAGAAAATGAACACTCAATTCACAGCAGTGGGCAAAGAATTCAACAAATTAGAAAGAAGGATGGAAAACTTGAATAAAAAAGTTGATGATGGATTTATAGACATTTGGACATATAATGCAGAACTGTTGGTTCTACTGGAAAATGAAAGGACTTTGGATTTCCATGACTCCAATGTGAAGAATCTGTATGAGAAAGTAAAAAGCCAGTTAAAGAATAATGCTAAAGAAATAGGAAATGGGTGTTTTGAATTCTATCACAAGTGTAACGATGAATGCATGGAGAGTGTAAAGAATGGAACTTATGACTATCCAAAATATTCCGAAGAATCAAAGTTAAACAGGGAGAAAATTGATGGAGTGAAATTGGAATCAATGGGAGTCTATCAGATTCTGGCGATCTACTCAACAGTCGCCAGTTCTCTGGTTCTTTTGGTCTCCCTGGGGGCAATCAGCTTCTGGATGTGTTCCAATGGGTCTTTGCAGTGTAGAATATGCATC'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_M', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATCCCGTCAGGCCCCCTCAAAGCCGAGATCGCACAGAGACTTGAAGATGTATTTGCTGGAAAGAATACCGATCTTGAGGCTCTCATGGAGTGGTTAAAGACAAGACCAATCCTGTCACCTCTGACTAAGGGGATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTTAATGGGAATGGGGATCCAAATAATATGGACAGAGCAGTCAAACTTTATCGAAAGCTTAAGAGGGAGATAACATTCCATGGGGCCAAAGAAATAGCACTCAGTTATTCTGCTGGTGCACTTGCCAGTTGTATGGGACTCATATACAACAGGATGGGGGCTGTGACCACCGAATCAGCATTTGGCCTTATATGTGCAACCTGTGAACAGATTGCCGACTCCCAGCATAAGTCTCACAGGCAAATGGTAACAACAACCAATCCATTAATAAGACATGAGAACAGAATGGTTCTGGCCAGCACCACAGCTAAGGCTATGGAACAAATGGCTGGATCGAGCGAACAAGCAGCTGAGGCCATGGAGGTTGCTAGTCAGGCCAGGCAGATGGTGCAGGCAATGAGAGCCATTGGGACTCATCCTAGCTCTAGCACTGGTCTGAAAAATGATCTCCTTGAAAATTTACAGGCCTATCAGAAACGAATGGGGGTGCAGATGCAACGATTCAAGTGATCCTCTTGTTGTTGCCGCAAGTATAATTGGGATTGTGCACTTGATATTGTGGATTATTGATCGCCTTTTTTCCAAAAGCATTTATCGTATCTTTAAACACGGTTTAAAAAGAGGGCCTTCTACGGAAGGAGTACCAGAGTCTATGAGGGAAGAATATCGAGAGGAACAGCAGAATGCTGTGGATGCTGACGATGATCATTTTGTCAGCATAGAGCTGGAGTAAAAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_NA', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGAACCCAAATCAAAAGATAATAACCATTGGATCAATCAGTATAGCAATCGGAATAATTAGTCTAATGTTGCAAATAGGAAATATTATTTCAATATGGGCTAGTCACTCAATCCAAACTGGGAGTCAAAACAACACTGGAATATGCAACCAAAGAATCATCACATATGAAAACAGCACCTGGGTGAATCACACATATGTTAATATTAACAACACTAATGTTGTTGCTGGAGAGGACAAAACATCAGTGACATTGGCCGGCAATTCATCTCTTTGTTCTATCAGTGGATGGGCTATATACACAAAAGACAACAGCATAAGAATTGGCTCCAAAGGAGATGTTTTTGTCATAAGAGAACCTTTCATATCATGTTCTCACTTGGAATGCAGAACCTTTTTTCTGACCCAAGGCGCTCTATTAAATGACAAACATTCAAATGGGACCGCAAAGGACAGAAGTCCTTATAGGGCCTTAATGAGCTGTCCTCTAGGTGAAGCTCCGTCCCCATACAATTCAAAGTTCGAATCAGTTGCATGGTCAGCAAGCGCATGCCATGATGGCATGGGCTGGTTAACAATCGGAATTTCTGGTCCAGACAATGGAGCTGTGGCTGTACTAAAATACAACGGAATAATAACTGGAACCATAAAAAGTTGGAAAAAGCAAATATTAAGAACACAAGAGTCTGAATGTGTCTGTATGAACGGGTCATGTTTCACCATAATGACCGATGGCCCGAGTAATAAGGCCGCCTCGTACAAAATTTTCAAGATCGAAAAGGGGAAGGTTACTAAATCAATAGAGTTGAATGCACCCAATTTTTATTATGAGGAATGCTCCTGTTACCCAGATACTGGCATAGTGATGTGTGTATGCAGGGACAACTGGCATGGTTCAAATCGACCTTGGGTGTCTTTTAATCAAAACTTGGATTATCAAATAGGATACATCTGCAGTGGAGTGTTTGGTGACAATCCGCGTCCCGAAGATGGAGAGGGCAGCTGCAATCCAGTGACTGTTGATGGAGCAAACGGAGTAAAAGGGTTTTCATACAAATATGGTAATGGTGTTTGGATAGGGAGGACCAAAAGTAACAGACTTAGAAAGGGGTTTGAGATGATTTGGGATCCTAATGGATGGACAAATACCGACAGTGATTTCTCAGTGAAACAGGATGTTGTAGCAATAACTGATTGGTCAGGGTACAGCGGAAGTTTCGTCCAACATCCTGAGTTAACAGGATTGGGCTGTATAAGACCTTGCTTCTGGGTTGAGTTAGTCAGAGGGCTGCCTAGAGAAAATACAACAATCTGGACTAGTGGGAGCAGCATTTCTTTTTGTGGCGTTAATAGTGATACTGCAAACTGGTCTTGGCCAGACGGTGCTGAGTTGCCGTTCACCATTGACAAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_NP', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGCGTCCCAAGGCACCAAACGGTCTTACGAACAGATGGAGACTGATGGGGAACGCCAGAATGCAACTGAAATCAGAGCATCCGTCGGAAGAATGATTGGTGGAATTGGGCGATTCTACATCCAAATGTGCACCGAGCTTAAGCTCAATGATTATGAGGGACGGCTGATCCAGAACAGCTTAACAATAGAGAGAATGGTGCTCTCTGCTTTTGATGAGAGGAGAAATAAATATCTAGAGGAACATCCCAGCGCGGGGAAAGATCCTAAGAAAACTGGAGGACCCATATACAAGAGAGTAGATGGAAAGTGGGTGAGGGAACTCGTCCTTTATGACAAAGAAGAAATAAGGCGGATTTGGCGCCAAGCCAACAATGGTGATGATGCAACGGCTGGTTTGACTCACATTATGATCTGGCATTCTAATTTGAATGATACAACTTACCAGAGGACAAGAGCTCTTGTCCGCACCGGAATGGATCCCAGGATGTGCTCTTTGATGCAAGGTTCAACTCTCCCTAGAAGATCTGGAGCAGCAGGCGCCGCAGTCAAAGGAGTTGGGACAATGGTATTGGAATTAATCAGGATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAGAATGGAAGAAAAACAAGGATTGCTTATGAGAGAATGTGCAACATTCTAAAAGGAAAATTTCAAACAGCTGCACAAAAAGCAATGATGGACCAAGTGAGAGAAAGCCGGAACCCAGGAAATGCTGAGATCGAAGATCTCACTTTTCTGGCACGGTCTGCACTCATATTGAGAGGATCAGTTGCTCACAAGTCTTGCCTGCCTGCCTGTGTGTATGGACCAGCCGTAGCCAGTGGGTATGACTTCGAAAAAGAGGGTTACTCTTTGGTAGGAGTAGACCCTTTCAAACTGCTTCAAACCAGTCAGGTATACAGTCTAATTAGACCAAACGAGAATCCCGCACACAAGAGCCAGTTGGTGTGGATGGCATGCAATTCTGCTGCATTTGAAGATCTAAGAGTGTCAAGCTTCATCAGAGGAACAAGAGTACTTCCAAGGGGGAAGCTCTCCACTAGAGGAGTACAAATTGCTTCAAATGAAAACATGGATGCTATTGTGTCAAGTACTCTTGAACTGAGAAGCAGATACTGGGCCATAAGAACCAGAAGTGGAGGGAACACTAATCAACAAAGGGCCTCTGCGGGCCAAATCAGCACACAACCTACGTTTTCTGTGCAGAGAAACCTCCCATTTGACAAAGCAACCATCATGGCAGCATTCTCTGGGAATACAGAGGGAAGAACATCAGACATGAGGGCAGAAATCATAAAGATGATGGAAAGTGCAAGACCAGAAGAAGTGTCCTTCCAGGGGCGGGGAGTCTTTGAGCTCTCGGACGAAAGGGCAACGAACCCGATCGTGCCCTCCTTTGACATGAGTAATGAAGGATCTTATTTCTTCGGAGACAATGCAGAGGAGTACGACAATTAAAGAAAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_NS', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGACTCCCACACTGTGTCAAGCTTTCAGGTAGATTGCTTCCTTTGGCATGTCCGCAAACAAGTTGCAGACCAAGATCTAGGCGATGCCCCCTTCCTTGATCGGCTTCGCCGAGATCAGAAGTCTCTAAAGGGAAGAGGCAGTACTCTCGGTCTGAACATCGAAACAGCCACTTGTGTTGGAAAGCAAATAGTAGAGAGGATTCTGAAAGAAGAATCCGATGAGGCACTTAAAATGACCATGGCCTCCGCACTTGCTTCGCGGTACCTAACTGACATGACTGTTGAAGAAATGTCAAGGGACTGGTTCATGCTCATGCCCAAGCAAAAAGTGGCTGGCCCTCTTTGTGTCAGAATGGACCAGGCAACAATGGATAAGAACATCATACTGAAAGCGAATTTCAGTGTGATTTTTGACCGGTTGGAGAATCTGACATTATTAAGGGCTTTCACCGAAGAGGGAGCAATTGTTGGCGAAATTTCACCATTGCCTTCTTTTCCAGGACATACTAATGAGGATGTCAAAAATGCAATTGGGGTCCTCATCGGGGGACTTGAATGGAATGATAACACAGTTCGAGTCTCTGAAACTCTACAGAGATTCGCTTGGAGAAGCAGTAATGAGACTGGGGGACCTCCATTCACTACAACACAGAAACGGAAAATGGCGGGAACAACTAGGTCAGAAGTTTGAAGAAGTAAGATGGCTGATTGAAGAAGTGAGGCATAAATTGAAGACGACAGAGAATAGTTTTGAGCAAATAACATTTATGCAAGCATTACAGCTATTATTTGAAGTGGAACAAGAGATTAGAACGTTTTCGTTTCAGCTTATTTAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_PA', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGAAGATTTTGTACGACAATGCTTCAATCCGATGATTGTCGAGCTTGCAGAAAAAGCAATGAAAGAGTATGGAGAGGACCTGAAAATCGAAACAAACAAATTTGCAGCAATATGCACCCACTTGGAAGTGTGCTTCATGTATTCAGATTTTCATTTCATCAATGAGCAAGGCGAATCAATAATAGTAGAGCCTGAGGACCCAAATGCACTTTTAAAGCACAGATTTGAGATAATAGAGGGACGAGATCGTACAATGGCATGGACAGTTGTAAACAGTATTTGCAACACCACAGGAGCTGAGAAACCAAAGTTCCTGCCAGATCTGTATGATTACAAAGAGAATAGATTCATCGAGATTGGAGTGACAAGGAGGGAAGTTCACATATACTATCTGGAAAAGGCCAACAAAATTAAATCTGAGAAGACACACATTCACATTTTCTCATTCACCGGCGAAGAAATGGCCACAAAGGCTGATTACACTCTCGATGAAGAAAGCAGAGCTAGGATTAAAACCAGATTGTTCACCATAAGACAAGAAATGGCAAGCAGAGGTCTTTGGGACTCCTTTCGTCAGTCCGAAAGAGGCGAAGAAACCATTGAAGAAAGATTTGAAATCACAGGGACAATGCGCAGGCTCGCTGACCAAAGCCTTCCGCCGAACTTCTCCTGCATTGAGAATTTTAGAGCCTATGTGGATGGATTTGAACCGAACGGCTACATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAAGTAAATGCTAGAATTGAGCCTTTTTTGAAAACAACACCTCGACCAATTAGACTTCCGAATGGGCCTCCTTGTTTTCAGCGGTCAAAATTTCTGCTGATGGATTCTTTAAAATTAAGCATTGAGGATCCGAATCATGAAGGTGAGGGGATACCACTATATGATGCAATCAAGTGTATGAGGACATTCTTTGGATGGAAAGAACCCACTGTTGTCAAGCCACACGAGAAGGGAATAAATCCAAATTATCTGTTGTCGTGGAAACAAGTATTGGAAGAGCTGCAGGACATTGAGAGTGAGGAGAAGATTCCAAGAACAAAAAACATGAAAAAAACTAGTCAGCTAAAGTGGGCACTTGGTGAGAACATGGCACCAGAGAAGGTGGATTTTGATGACTGTAAAGATATAAGCGATTTGAAGCAATATGACAGTGACGAACCTGAATTAAGATCATTTTCAAGTTGGATCCAGAATGAGTTCAACAAGGCATGCGAGCTGACCGATTCAATCTGGATAGAGCTTGATGAGATTGGAGAAGATGTGGCTCCGATTGAACACATTGCAAGCATGAGAAGGAATTACTTCACAGCTGAGGTGTCCCACTGCAGAGCCACAGAATATATAATGAAGGGGGTATACATTAATACTGCTTTGCTCAATGCATCCTGTGCAGCAATGGATGATTTCCAACTAATTCCCATGATAAGCAAATGTAGAACTAAAGAGGGAAGGAGAAAGACCAATTTGTACGGCTTCATCGTAAAAGGAAGATCTCACTTAAGGAATGACACCGATGTGGTAAACTTTGTGAGCATGGAGTTTTCCCTCACTGACCCAAGACTTGAGCCACACAAATGGGAGAAGTACTGCGTTCTTGAGATAGGAGATATGCTTCTAAGGAGTGCAATAGGCCAAGTGTCAAGGCCCATGTTCTTGTATGTAAGGACAAATGGAACCTCAAAAATTAAAATGAAATGGGGAATGGAGATGAGGCGTTGCCTCCTCCAATCCCTCCAACAAATAGAGAGCATGATTGAAGCTGAGTCCTCTGTCAAAGAGAAAGACATGACAAAAGAGTTTTTTGAGAATAAATCAGAAACATGGCCCATTGGAGAGTCACCAAAAGGAGTGGAAGAAGGTTCCATTGGGAAAGTATGCAGGACACTGTTGGCTAAGTCAGTATTCAATAGCCTGTATGCATCTCCACAATTAGAAGGATTTTCAGCTGAGTCAAGAAAGTTGCTCCTCATTGTTCAGGCTCTTAGGGACAATCTGGAACCTGGGACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCTTCTTGGTTCAACTCCTTCCTAACACATGCATTGAGATAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_PB1', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGATGTCAATCCGACATTACTTTTCTTAAAAGTGCCAGCACAAAATGCTATAAGCACAACTTTTCCTTATACTGGTGACCCTCCTTACAGCCATGGGACAGGAACAGGGTACACCATGGATACAGTCAACAGGACACACCAGTACTCAGAAAGAGGAAGATGGACAAAAAATACCGAAACGGGAGCACCGCAACTTAACCCAATTGATGGTCCCTTACCGGAAGACAATGAACCAAGTGGCTATGCCCAAACAGATTGTGTATTAGAAGCAATGGCTTTCCTTGAAGAATCCCATCCCGGTATCTTTGAAAACTCTTGTATTGAAACAATGGAGGTTGTTCAACAAACAAGGGTGGACAAACTGACACAAGGCAGACAGACCTATGACTGGACTCTAAATAGGAACCAGCCTGCTGCCACAGCATTGGCAAACACTATAGAAGTATTCAGATCAAACGGCCTCATAGCAAATGAATCTGGGAGGCTAATAGACTTCCTTAAAGATGTAATGGAGTCGATGGACAGAGGCGAAGTAGAGGTCACAACTCATTTTCAAAGAAAGAGGAGAGTGAGAGACAATGTAACTAAAAAAATGGTGACCCAAAGAACAATAGGCAAAAAGAAACATAAATTAGACAAAAGAAGTTACCTAATTAGGGCATTAACCCTGAACACAATGACCAAAGATGCTGAGAGGGGGAAACTAAAACGCAGAGCAATTGCAACCCCAGGAATGCAAATAAGAGGGTTTGTATACTTTGTTGAGACACTGGCAAGAAGCATATGTGAAAAGCTTGAACAATCAGGATTGCCAGTTGGAGGAAATGAGAAGAAAGCAAAGTTAGCAAATGTTGTAAGGAAGATGATGACCAACTCCCAGGACACTGAAATTTCTTTCACCATAACCGGAGATAACACAAAATGGAACGAAAATCAAAACCCTAGAATGTTCTTGGCCATGATCACATATATAACCAAAAATCAGCCTGAATGGTTCAGAAATATTCTAAGTATTGCTCCAATAATGTTTTCAAATAAGATGGCGAGACTAGGCAAGGGGTACATGTTTGAAAGCAAGAGTATGAAACTGAGAACTCAAATACCTGCAGAGATGCTAGCCAACATAGACTTGAAATATTTCAATGATTCAACAAAAAAGAAAATTGAAAAAATCCGACCATTATTAATAGATGGAACTGCATCATTGAGTCCTGGAATGATGATGGGCATGTTCAATATGTTGAGCACCGTCTTGGGCGTCTCCATTCTGAATCTTGGGCAAAAGAGATACACCAAGACTACTTACTGGTGGGATGGTCTTCAATCGTCTGATGATTTTGCTTTGATTGTGAACGCACCCAACTATGCAGGAATTCAAGCTGGAGTTGACAGGTTTTATCGAACCTGTAAGCTGCTCGGAATTAATATGAGCAAAAAGAAGTCTTACATAAACAGAACAGGTACCTTTGAATTCACGAGCTTTTTCTATCGTTATGGGTTTGTTGCCAATTTTAGCATGGAGCTTCCTAGTTTTGGGGTGTCTGGGGTCAATGAATCTGCAGACATGAGTATTGGAGTCACTGTCATCAAAAACAATATGATAAACAATGACCTTGGCCCAGCAACTGCTCAAATGGCCCTTCAGTTATTTATCAAAGATTACAGGTACACTTATCGATGCCACCGAGGTGACACACAAATACAAACCCGGAGATCATTTGAGATAAAGAAACTATGGGACCAAACCCGCTCAAAAGCTGGACTGTTGGTCTCTGATGGAGGCCCCAATTTGTATAACATTAGAAATCTCCATATTCCTGAAGTTTGCTTGAAATGGGAGTTGATGGATGAGGATTACCAGGGGCGTTTATGCAACCCATTAAACCCGTTTGTCAGCCATAAAGAGATTGAATCTGTGAACAGTGCAGTGATAATGCCGGCACATGGTCCAGCCAAAAATATGGAGTATGACGCTGTTGCAACAACACACTCCTGGGTCCCCAAAAGAAATCGATCCATTTTGAACACGAGCCAAAGGGGGATACTTGAAGATGAGCAAATGTATCAGAGGTGCTGCAATTTATTTGAAAAATTCTTCCCAAGTAGCTCATACAGAAGACCAGTTGGAATATCCAGTATGGTAGAGGCTATGGTCTCAAGAGCCCGAATTGATGCACGGATTGATTTCGAATCTGGAAGGATAAAGAAAGAGGAATTTGCTGAGATCATGAAGATCTGTTCCACCATTGAAGACCTCAGACGGCAAAAATGA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_Kawasaki_UTK-04_09_PB2', 'Virus', 'A_Kawasaki_UTK-04_09', 'RNA', 'Influenza A', 'ATGGAAAGAATAAAAGAGCTAAGGAATTTGATGTCACAATCTCGCACTCGCGAGATACTTACCAAAACTACTGTAGACCACATGGCCATAATCAAGAAATACACATCAGGAAGACAGGAGAAAAACCCATCACTTAGGATGAAATGGATGATGGCAATGAAATACCCAATTACTGCTGATAAAAGGATAACGGAAATGATTCCTGAAAGAAATGAGCATGGACAGACATTATGGAGTAAGGTGAATGATGCCGGATCAGACCGAGTGATGGTATCACCCCTGGCTGTGACATGGTGGAACAGAAATGGACCAGTGGCAAGTACTATTCACTATCCAAAAATCTACAAAACTTACTTTGAAAAGGTTGAAAGGTTAAAACAAGGAACCTTTGGCCCTGTACACTTTAGAAACCAAGTCAAAATACGCCGAAGAGTCGACATAAATCCTGGTCATGCAGACCTCAGCGCCAAGGAGGCACAGGATGTAATTATGGAAGTTGTTTTCCCTAATGAAGTAGGAGCCAGAATACTAACATCAGAATCGCAATTAACGATAACCAAGGAGAAAAAAGAAGAACTCCAAAATTGCAAAATTTCCCCTTTGATGGTTGCATACATGTTAGAGAGGGAACTTGTCCGCAAAACAAGATTTCTCCCGGTTGCAGGTGGAACAAGCAGTGTGTACATTGAAGTTTTGCATTTAACACAGGGGACATGCTGGGAGCAGATGTACACTCCAGGTGGGGAGGTGAGGAATGATGATGTTGATCAAAGCCTAATTATTGCTGCTAGGAACATAGTGAGAAGAGCTGCAGTATCAGCAGATCCACTAGCATCTTTATTAGAAATGTGCCATAGCACACAGATTGGTGGAACAAGGATGGTGGATATTCTCAGGCAAAATCCAACAGAAGAACAAGCTGTGGACATATGCAAAGCAGCAATGGGGCTGAGAATCAGTTCATCCTTCAGTTTTGGCGGATTCACATTTAAGAGAACAAGTGGATCATCAGTCAAAAGGGAGGAAGAAGTGCTCACGGGCAATCTGCAAACATTGAAACTAACTGTGCATGAGGGATATGAAGAGTTCACAATGGTTGGGAAAAGGGCAACAGCTATACTCAGAAAAGCAACCAGGAGATTGATCCAACTAATAGTGAGTGGAAGAGACGAACAATCAATAGTCGAAGCAATAGTTGTAGCAATGGTATTCTCACAAGAAGATTGCATGATAAAAGCAGTTAGAGGTGATCTGAATTTCGTTAATAGAGCGAATCAGCGGTTGAATCCCATGCATCAACTATTGAGACATTTTCAGAAGGATGCTAAAGTACTTTTCTTAAATTGGGGAGTTGAATCTATTGACAATGTGATGGGAATGATTGGGATATTACCTGATATGACTCCAAGTACCGAGATGTCAATGAGAGGAGTGAGAGTCAGCAAAATGGGTGTAGATGAATACTCCAATGCTGAAAGGGTAGTGGTAAGCATTGACCGTTTTTTGAGAGTCCGGGACCAAAGAGGAAATGTGCTACTGTCTCCAGAGGAAGTAAGTGAAACACAAGGGACAGAGAAACTGACAATAACTTATTCTTCATCAATGATGTGGGAGATTAATGGCCCTGAGTCAGTCTTGATCAATACCTATCAGTGGATCATCAGAAACTGGGAGACTGTTAAAATTCAGTGGTCTCAGAATCCTACGATGCTGTACAATAAAATGGAATTTGAACCATTTCAGTCTCTAGTCCCCAAGGCCATTAGAGGCCAATACAGTGGGTTTGTTAGAACTCTATTCCAACAAATGAGGGATGTGCTTGGGACTTTTGACACAACTCAGATAATAAAACTTCTTCCCTTTGCAGCCGCTCCTCCAAAGCAAAGCAGAATGCAATTCTCGTCATTAACTGTGAATGTGAGGGGATCAGGAATGAGAATACTTGTGAGGGGTAATTCTCCAGTATTCAACTACAACAAGACTACCAAGAGACTCACAGTCCTCGGAAAGGATGCTGGCACTTTAACTGAAGACCCAGATGAAGGCACAGCTGGAGTGGAATCTGCGGTTCTAAGGGGGTTCCTCATTTTAGGCAAAGAAGATAGAAGATATGGGCCAGCATTAAGCATCAATGAATTGAGCAACCTTGCGAAAGGGGAAAAAGCTAATGTGCTAATTGGGCAAGGGGATGTAGTGTTGGTAATGAAACGAAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_HA', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGAAGGCAATACTAGTAGTTCTGCTATATACATTTGCAACCGCAAATGCAGACACATTATGTATAGGTTATCATGCGAACAATTCAACAGACACTGTAGACACAGTACTAGAAAAGAATGTAACAGTAACACACTCTGTTAACCTTCTAGAAGACAAGCATAACGGGAAACTATGCAAACTAAGAGGGGTAGCCCCATTGCATTTGGGTAAATGTAACATTGCTGGCTGGATCCTGGGAAATCCAGAGTGTGAATCACTCTCCACAGCAAGCTCATGGTCCTACATTGTGGAAACACCTAGTTCAGACAATGGAACGTGTTACCCAGGAGATTTCATCGATTATGAGGAGCTAAGAGAGCAATTGAGCTCAGTGTCATCATTTGAAAGGTTTGAGATATTCCCCAAGACAAGTTCATGGCCCAATCATGACTCGAACAAAGGTGTAACGGCAGCATGTCCTCATGCTGGAGCAAAAAGCTTCTACAAAAATTTAATATGGCTAGTTAAAAAAGGAAATTCATACCCAAAGCTCAGCAAATCCTACATTAATGATAAAGGGAAAGAAGTCCTCGTGCTATGGGGCATTCACCATCCATCTACTAGTGCTGACCAACAAAGTCTCTATCAGAATGCAGATACATATGTTTTTGTGGGGTCATCAAGATACAGCAAGAAGTTCAAGCCGGAAATAGCAATAAGACCCAAAGTGAGGGATCAAGAAGGGAGAATGAACTATTACTGGACACTAGTAGAGCCGGGAGACAAAATAACATTCGAAGCAACTGGAAATCTAGTGGTACCGAGATATGCATTCGCAATGGAAAGAAATGCTGGATCTGGTATTATCATTTCAGATACACCAGTCCACGATTGCAATACAACTTGTCAAACACCCAAGGGTGCTATAAACACCAGCCTCCCATTTCAGAATATACATCCGATCACAATTGGAAAATGTCCAAAATATGTAAAAAGCACAAAATTGAGACTGGCCACAGGATTGAGGAATATCCCGTCTATTCAATCTAGAGGCCTATTTGGGGCCATTGCCGGTTTCATTGAAGGGGGGTGGACAGGGATGGTAGATGGATGGTACGGTTATCACCATCAAAATGAGCAGGGGTCAGGATATGCAGCCGACCTGAAGAGCACACAGAATGCCATTGACGAGATTACTAACAAAGTAAATTCTGTTATTGAAAAGATGAATACACAGTTCACAGCAGTAGGTAAAGAGTTCAACCACCTGGAAAAAAGAATAGAGAATTTAAATAAAAAAGTTGATGATGGTTTCCTGGACATTTGGACTTACAATGCCGAACTGTTGGTTCTATTGGAAAATGAAAGAACTTTGGACTACCACGATTCAAATGTGAAGAACTTATATGAAAAGGTAAGAAGCCAGCTAAAAAACAATGCCAAGGAAATTGGAAACGGCTGCTTTGAATTTTACCACAAATGCGATAACACGTGCATGGAAAGTGTCAAAAATGGGACTTATGACTACCCAAAATACTCAGAGGAAGCAAAATTAAACAGAGAAGAAATAGATGGGGTAAAGCTGGAATCAACAAGGATTTACCAGATTTTGGCGATCTATTCAACTGTCGCCAGTTCATTGGTACTGGTAGTCTCCCTGGGGGCAATCAGTTTCTGGATGTGCTCTAATGGGTCTCTACAGTGTAGAATATGTATTTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_M', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTTTCTATCATCCCGTCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTGGAAAGTGTCTTTGCAGGAAAGAACACAGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCTTGTCACCTCTGACTAAGGGAATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTAAATGGGAATGGGGACCCGAACAACATGGATAGAGCAGTTAAACTATACAAGAAGCTCAAAAGAGAAATAACGTTCCATGGGGCCAAGGAGGTGTCACTAAGCTATTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGGATGGGAACAGTGACCACAGAAGCTGCTTTTGGTCTAGTGTGTGCCACTTGTGAACAGATTGCTGATTCACAGCATCGGTCTCACAGACAGATGGCTACTACCACCAATCCACTAATCAGGCATGAAAACAGAATGGTGCTGGCTAGCACTACGGCAAAGGCTATGGAACAGATGGCTGGATCGAGTGAACAGGCAGCGGAGGCCATGGAGGTTGCTAATCAGACTAGGCAGATGGTACATGCAATGAGAACTATTGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAGATGACCTTCTTGAAAATTTGCAGGCCTACCAGAAGCGAATGGGAGTGCAGATGCAGCGATTCAAGTGATCCTCTCGTCATTGCAGCAAATATCATTGGGATCTTGCACCTGATATTGTGGATTACTGATCGTCTTTTTTTCAAATGTATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCTTCTACGGAAGGAGTGCCTGAGTCCATGAGGGAAGAATATCAACAGGAACAGCAGAGTGCTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTAGAGTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_NA', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGAATCCAAACCAAAAGATAATAACCATTGGTTCGGTCTGTATGACAATTGGAATGGCTAACTTAATATTACAAATTGGAAACATAATCTCAATATGGATTAGCCACTCAATTCAACTTGGGAATCAAAATCAGATTGAAACATGCAATCAAAGCGTCATTACTTATGAAAACAACACTTGGGTAAATCAGACATATGTTAACATCAGCAACACCAACTTTGCTGCTGGACAGTCAGTGGTTTCCGTGAAATTAGCGGGCAATTCCTCTCTCTGCCCTGTTAGTGGATGGGCTATATACAGTAAAGACAACAGTGTAAGAATCGGTTCCAAGGGGGATGTGTTTGTCATAAGGGAACCATTCATATCATGCTCCCCCTTGGAATGCAGAACCTTCTTCTTGACTCAAGGGGCCTTGCTAAATGACAAACATTCCAATGGAACCATTAAAGACAGGAGCCCATATCGAACCCTAATGAGCTGTCCTATTGGTGAAGTTCCCTCTCCATACAACTCAAGATTTGAGTCAGTCGCTTGGTCAGCAAGTGCTTGTCATGATGGCATCAATTGGCTAACAATTGGAATTTCTGGCCCAGACAATGGGGCAGTGGCTGTGTTAAAGTACAACGGCATAATAACAGACACTATCAAGAGTTGGAGAAACAATATATTGAGAACACAAGAGTCTGAATGTGCATGTGTAAATGGTTCTTGCTTTACTGTAATGACCGATGGACCAAGTAATGGACAGGCCTCATACAAGATCTTCAGAATAGAAAAGGGAAAGATAGTCAAATCAGTCGAAATGAATGCCCCTAATTATCACTATGAGGAATGCTCCTGTTATCCTGATTCTAGTGAAATCACATGTGTGTGCAGGGATAACTGGCATGGCTCGAATCGACCGTGGGTGTCTTTCAACCAGAATCTGGAATATCAGATAGGATACATATGCAGTGGGATTTTCGGAGACAATCCACGCCCTAATGATAAGACAGGCAGTTGTGGTCCAGTATCGTCTAATGGAGCAAATGGAGTAAAAGGGTTTTCATTCAAATACGGCAATGGTGTTTGGATAGGGAGAACTAAAAGCATTAGTTCAAGAAACGGTTTTGAGATGATTTGGGATCCGAACGGATGGACTGGGACAGACAATAACTTCTCAATAAAGCAAGATATCGTAGGAATAAATGAGTGGTCAGGATATAGCGGGAGTTTTGTTCAGCATCCAGAACTAACAGGGCTGGATTGTATAAGACCTTGCTTCTGGGTTGAACTAATCAGAGGGCGACCCAAAGAGAACACAATCTGGACTAGCGGGAGCAGCATATCCTTTTGTGGTGTAAACAGTGACACTGTGGGTTGGTCTTGGCCAGACGGTGCTGAGTTGCCATTTACCATTGACAAGTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_NP', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGCGTCTCAAGGCACCAAACGATCATATGAACAAATGGAGACTGGTGGGGAGCGCCAGGATGCCACAGAAATCAGAGCATCTGTCGGAAGAATGATTGGTGGAATCGGGAGATTCTACATCCAAATGTGCACTGAACTCAAACTCAGTGATTATGATGGACGACTAATCCAGAATAGCATAACAATAGAGAGGATGGTGCTTTCTGCTTTTGATGAGAGAAGAAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAGGACCCTAAGAAAACAGGAGGACCCATATATAGAAGAGTAGACGGAAAGTGGATGAGAGAACTCATCCTTTATGACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCAAACAATGGCGAAGATGCAACAGCAGGTCTTACTCATATCATGATTTGGCATTCCAACCTGAATGATGCCACATATCAGAGAACAAGAGCGCTTGTTCGCACCGGAATGGATCCCAGAATGTGCTCTCTAATGCAAGGTTCAACACTTCCCAGAAGGTCTGGTGCCGCAGGTGCTGCGGTGAAAGGAGTTGGAACAATAGCAATGGAGTTAATCAGAATGATCAAACGTGGAATCAATGACCGAAATTTCTGGAGGGGTGAAAATGGACGAAGGACAAGGGTTGCTTATGAAAGAATGTGCAATATCCTCAAAGGAAAATTTCAAACAGCTGCCCAGAGGGCAATGATGGATCAAGTAAGAGAAAGTCGAAACCCAGGAAACGCTGAGATTGAAGACCTCATTTTCCTGGCACGGTCAGCACTCATTCTGAGGGGATCAGTTGCACATAAATCCTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCAAGTGGGCATGACTTTGAAAGGGAAGGGTACTCACTGGTCGGGATAGACCCATTCAAATTACTCCAAAACAGCCAAGTGGTCAGCCTGATGAGACCAAATGAAAACCCAGCTCACAAGAGTCAATTGGTGTGGATGGCATGCCACTCTGCTGCATTTGAAGATTTAAGAGTATCAAGTTTCATAAGAGGAAAGAAAGTGATTCCAAGAGGAAAGCTTTCCACAAGAGGGGTCCAGATTGCTTCAAATGAGAATGTGGAAACCATGGACTCCAATACCCTGGAACTGAGAAGCAGATACTGGGCCATAAGGACCAGGAGTGGAGGAAATACCAATCAACAAAAGGCATCCGCAGGCCAGATCAGTGTGCAGCCTACATTCTCAGTGCAGCGGAATCTCCCTTTTGAAAGAGCAACCGTTATGGCAGCATTCAGCGGGAACAATGAAGGACGGACATCCGACATGCGAACAGAAGTTATAAGAATGATGGAAAGTGCAAAGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACGAACCCGATCGTGCCTTCCTTTGACATGAGTAATGAAGGGTCTTATTTCTTCGGAGACAATGCAGAGGAGTATGACAGTTGA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_NS', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGACTCCAACACCATGTCAAGCTTTCAGGTAGACTGTTTCCTTTGGCATATCCGCAAGCGATTTGCAGACAATGGATTGGGTGATGCCCCATTCCTTGATCGGCTCCGCCGAGATCAAAAGTCCTTAAAAGGAAGAGGCAACACCCTTGGCCTCGATATCGAAACAGCCACTCTTGTTGGGAAACAAATCGTGGAATGGATCTTGAAAGAGGAATCCAGCGAGACACTTAGAATGACAATTGCATCTGTACCTACTTCGCGCTACCTTTCTGACATGACCCTCGAGGAAATGTCACGAGACTGGTTCATGCTCATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGATTGGACCAGGCGATCATGGAAAAGAACATAGTACTGAAAGCGAACTTCAGTGTAATCTTTAACCGATTAGAGACCTTGATACTACTAAGGGCTTTCACTGAGGAGGGAGCAATAGTTGGAGAAATTTCACCATTACCTTCTCTTCCAGGACATACTTATGAGGATGTCAAAAATGCAGTTGGGGTCCTCATCGGAGGACTTGAATGGAATGGTAACACGGTTCGAGTCTCTGAAAATATACAGAGATTCGCTTGGAGAAACTGTGATGAGAATGGGAGACCTTCACTACCTCCAGAGCAGAAATGAAAAGTGGCGAGAGCAATTGGGACAGAAATTTGAGGAAATAAGGTGGTTAATTGAAGAAATGCGGCACAGATTGAAAGCGACAGAGAATAGTTTCGAACAAATAACATTTATGCAAGCCTTACAACTACTGCTTGAAGTAGAACAAGAGATAAGAGCTTTCTCGTTTCAGCTTATTTAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_PA', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGAAGACTTTGTGCGACAATGCTTCAATCCAATGATCGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACTAACAAGTTTGCTGCAATATGCACACATTTGGAAGTTTGTTTCATGTATTCGGATTTCCATTTCATCGACGAACGGGGTGAATCAATAATTGTAGAATCTGGTGACCCGAATGCACTATTGAAGCACCGATTTGAGATAATTGAAGGAAGAGACCGAATCATGGCCTGGACAGTGGTGAACAGTATATGTAACACAACAGGGGTAGAGAAGCCTAAATTTCTTCCTGATTTGTATGATTACAAAGAGAACCGGTTCATTGAAATTGGAGTAACACGGAGGGAAGTCCACATATATTACCTAGAGAAAGCCAACAAAATAAAATCTGAGAAGACACACATTCACATCTTTTCATTCACTGGAGAGGAGATGGCCACCAAAGCGGACTACACCCTTGACGAAGAGAGCAGGGCAAGAATCAAAACTAGGCTTTTCACTATAAGACAAGAAATGGCCAGTAGGAGTCTATGGGATTCCTTTCGTCAGTCCGAAAGAGGCGAAGAGACAATTGAAGAAAAATTTGAGATTACAGGAACTATGCGCAAGCTTGCCGACCAAAGTCTCCCACCGAACTTCCCCAGCCTTGAAAACTTTAGAGCCTATGTAGATGGATTCGAGCCGAACGGCTGCATTGAGGGCAAGCTTTCCCAAATGTCAAAAGAAGTGAACGCCAAAATTGAACCATTCTTGAGGACGACACCACGCCCCCTCAGATTGCCTGATGGGCCTCTTTGCCATCAGCGGTCAAAGTTCCTGCTGATGGATGCTCTGAAATTAAGTATTGAAGACCCGAGTCACGAGGGGGAGGGAATACCACTATATGATGCAATCAAATGCATGAAGACATTCTTTGGCTGGAAAGAGCCTAACATAGTCAAACCACATGAGAAAGGCATAAATCCCAATTACCTCATGGCTTGGAAGCAGGTGCTAGCAGAGCTACAGGACATTGAAAATGAAGAGAAGATCCCAAGGACAAAGAACATGAAGAGAACAAGCCAATTGAAGTGGGCACTCGGTGAAAATATGGCACCAGAAAAAGTAGACTTTGATGACTGCAAAGATGTTGGAGACCTTAAACAGTATGACAGTGATGAGCCAGAGCCCAGATCTCTAGCAAGCTGGGTCCAAAATGAATTCAATAAGGCATGTGAATTGACTGATTCAAGCTGGATAGAACTTGATGAAATAGGAGAAGATGTTGCCCCGATTGAACATATCGCAAGCATGAGGAGGAACTATTTTACAGCAGAAGTGTCCCACTGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAATACGGCCTTGCTCAATGCATCCTGTGCAGCCATGGATGACTTTCAGCTGATCCCAATGATAAGCAAATGTAGGACCAAAGAAGGAAGACGGAAAACAAACCTGTATGGGTTCATTATAAAAGGAAGGTCTCATTTGAGAAATGATACTGATGTGGTGAACTTTGTAAGTATGGAGTTCTCACTCACTGACCCGAGACTGGAGCCACACAAATGGGAAAAATACTGTGTTCTTGAAATAGGAGACATGCTCTTGAGGACTGCGATAGGCCAAGTGTCGAGGCCCATGTTCCTATATGTGAGAACCAATGGAACCTCCAAGATCAAGATGAAATGGGGCATGGAAATGAGGCGCTGCCTTCTTCAGTCTCTTCAGCAGATTGAGAGCATGATTGAGGCCGAGTCTTCTGTCAAAGAGAAAGACATGACCAAGGAATTCTTTGAAAACAAATCGGAAACATGGCCAATCGGAGAGTCACCCAGGGGAGTGGAGGAAGGCTCTATTGGGAAAGTGTGCAGGACCTTACTGGCAAAATCTGTATTCAACAGTCTATATGCGTCTCCACAACTTGAGGGGTTTTCGGCTGAATCTAGAAAATTGCTTCTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGGCTATATGAAGCAATCGAGGAGTGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATGCACTGAAGTAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_PB1', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGATGTCAATCCGACTCTACTTTTCCTAAAAATTCCAGCGCAAAATGCCATAAGCACCACATTCCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGATACACCATGGACACAGTAAACAGAACACACCAATACTCAGAAAAGGGAAAGTGGACGACAAACACAGAGACTGGTGCACCCCAGCTCAACCCGATTGATGGACCACTACCTGAGGATAATGAACCAAGTGGGTATGCACAAACAGACTGTGTTCTAGAGGCTATGGCTTTCCTTGAAGAATCCCACCCAGGAATATTTGAGAATTCATGCCTTGAAACAATGGAAGTTGTTCAACAAACAAGGGTAGATAAACTAACTCAAGGTCGCCAGACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCAACTGCATTGGCCAACACCATAGAAGTCTTTAGATCGAATGGCCTAACAGCTAATGAGTCAGGAAGGCTAATAGATTTCTTAAAGGATGTAATGGAATCAATGAACAAAGAGGAAATAGAGATAACAACCCACTTTCAAAGAAAAAGGAGAGTAAGAGACAACATGACCAAGAAGATGGTCACGCAAAGAACAATAGGGAAGAAAAAACAAAGACTGAATAAGAGAGGCTATCTAATAAGAGCACTGACATTAAATACGATGACCAAAGATGCAGAGAGAGGCAAGTTAAAAAGAAGGGCTATCGCAACACCTGGGATGCAGATTAGAGGTTTCGTATACTTTGTTGAAACTTTAGCTAGGAGCATTTGCGAAAAGCTTGAACAGTCTGGGCTCCCAGTAGGGGGCAATGAAAAGAAGGCCAAACTGGCAAATGTTGTGAGAAAGATGATGACTAATTCACAAGACACAGAGATTTCTTTCACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAATCCTCGAATGTTCCTGGCGATGATTACATATATCACCAGAAATCAACCCGAGTGGTTCAGAAACATCCTGAGCATGGCACCCATAATGTTCTCAAACAAAATGGCAAGACTAGGGAAAGGGTACATGTTCGAGAGTAAAAGAATGAAGATTCGAACACAAATACCAGCAGAAATGCTAGCAAGCATTGACCTGAAGTACTTCAATGAATCAACAAAGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACAGCATCACTGAGTCCTGGGATGATGATGGGCATGTTCAACATGCTAAGTACGGTCTTGGGAGTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAATATACTGGTGGGATGGGCTCCAATCATCCGACGATTTTGCTCTCATAGTGAATGCACCAAACCATGAGGGAATACAAGCAGGAGTGGACAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTCCTATATAAATAAGACAGGGACATTTGAATTCACAAGCTTTTTTTATCGCTATGGATTTGTGGCTAATTTTAGCATGGAGCTACCCAGCTTTGGAGTGTCTGGAGTAAATGAATCAGCTGACATGAGTATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGACCTGCAACGGCCCAGATGGCTCTTCAATTGTTCATCAAAGACTACAGATACACATATAGGTGCCATAGGGGAGACACACAAATTCAGACGAGAAGATCATTTGAGTTAAAGAAGCTGTGGGATCAAACCCAATCAAAAGTAGGGCTATTAGTATCAGATGGAGGACCAAACTTATACAATATACGGAATCTTCACATTCCTGAAGTCTGCTTAAAATGGGAGCTAATGGATGATGATTATCGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGTCATAAAGAGATTGATTCTGTAAACAATGCTGTGGTAATGCCAGCCCATGGTCCAGCCAAAAGCATGGAATATGATGCCGTTGCAACTACACATTCCTGGATTCCCAAGAGGAATCGTTCTATTCTCAACACAAGCCAAAGGGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAATCTATTCGAGAAATTTTTCCCTAGCAGTTCATATAGGAGACCGGTTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCTAGGGCCCGGATTGATGCCAGGGTCGACTTCGAGTCTGGACGGATCAAGAAAGAAGAGTTCTCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAA'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('A_California_04_09_PB2', 'Virus', 'A_California_04_09', 'RNA', 'Influenza A', 'ATGGAGAGAATAAAAGAACTGAGAGATCTAATGTCGCAGTCCCGCACTCGCGAGATACTCACTAAGACCACTGTGGACCATATGGCCATAATCAAAAAGTACACATCAGGAAGGCAAGAGAAGAACCCCGCACTCAGAATGAAGTGGATGATGGCAATGAGATACCCAATTACAGCAGACAAGAGAATAATGGACATGATTCCAGAGAGGAATGAACAAGGACAAACCCTCTGGAGCAAAACAAACGATGCTGGATCAGACCGAGTGATGGTATCACCTCTGGCCGTAACATGGTGGAATAGGAATGGCCCAACAACAAGTACAGTTCATTACCCTAAGGTATATAAAACTTATTTCGAAAAGGTCGAAAGGTTGAAACATGGTACCTTCGGCCCTGTCCACTTCAGAAATCAAGTTAAAATAAGGAGGAGAGTTGATACAAACCCTGGCCATGCAGATCTCAGTGCCAAGGAGGCACAGGATGTGATTATGGAAGTTGTTTTCCCAAATGAAGTGGGGGCAAGAATACTGACATCAGAGTCACAGCTGGCAATAACAAAAGAGAAGAAAGAAGAGCTCCAGGATTGTAAAATTGCTCCCTTGATGGTGGCGTACATGCTAGAAAGAGAATTGGTCCGTAAAACAAGGTTTCTCCCAGTAGCCGGCGGAACAGGCAGTGTTTATATTGAAGTGTTGCACTTAACCCAAGGGACGTGCTGGGAGCAGATGTACACTCCAGGAGGAGAAGTGAGAAATGATGATGTTGACCAAAGTTTGATTATCGCTGCTAGAAACATAGTAAGAAGAGCAGCAGTGTCAGCAGACCCATTAGCATCTCTCTTGGAAATGTGCCACAGCACACAGATTGGAGGAGTAAGGATGGTGGACATCCTTAGACAGAATCCAACTGAGGAACAAGCCGTAGACATATGCAAGGCAGCAATAGGGTTGAGGATTAGCTCATCTTTCAGTTTTGGTGGGTTCACTTTCAAAAGGACAAGCGGATCATCAGTCAAGAAAGAAGAAGAAGTGCTAACGGGCAACCTCCAAACACTGAAAATAAGAGTACATGAAGGGTATGAAGAATTCACAATGGTTGGGAGAAGAGCAACAGCTATTCTCAGAAAGGCAACCAGGAGATTGATCCAGTTGATAGTAAGCGGGAGAGACGAGCAGTCAATTGCTGAGGCAATAATTGTGGCCATGGTATTCTCACAGGAGGATTGCATGATCAAGGCAGTTAGGGGCGATCTGAACTTTGTCAATAGGGCAAACCAGCGACTGAACCCCATGCACCAACTCTTGAGGCATTTCCAAAAAGATGCAAAAGTGCTTTTCCAGAACTGGGGAATTGAATCCATCGACAATGTGATGGGAATGATCGGAATACTGCCCGACATGACCCCAAGCACGGAGATGTCGCTGAGAGGGATAAGAGTCAGCAAAATGGGAGTAGATGAATACTCCAGCACGGAGAGAGTGGTAGTGAGTATTGACCGATTTTTAAGGGTTAGAGATCAAAGAGGGAACGTACTATTGTCTCCCGAAGAAGTCAGTGAAACGCAAGGAACTGAGAAGTTGACAATAACTTATTCGTCATCAATGATGTGGGAGATCAATGGCCCTGAGTCAGTGCTAGTCAACACTTATCAATGGATAATCAGGAACTGGGAAATTGTGAAAATTCAATGGTCACAAGATCCCACAATGTTATACAACAAAATGGAATTTGAACCATTTCAGTCTCTTGTCCCTAAGGCAACCAGAAGCCGGTACAGTGGATTCGTAAGGACACTGTTCCAGCAAATGCGGGATGTGCTTGGGACATTTGACACTGTCCAAATAATAAAACTTCTCCCCTTTGCTGCTGCCCCACCAGAACAGAGTAGGATGCAATTTTCCTCATTGACTGTGAATGTGAGAGGATCAGGGTTGAGGATACTGGTAAGAGGCAATTCTCCAGTATTCAATTACAACAAGGCAACCAAACGACTTACAGTTCTTGGAAAGGATGCAGGTGCATTGACTGAAGATCCAGATGAAGGCACATCTGGGGTGGAGTCTGCTGTCCTGAGAGGATTTCTCATTTTGGGCAAAGAAGACAAGAGATATGGCCCAGCATTAAGCATCAATGAACTGAGCAATCTTGCAAAAGGAGAGAAGGCTAATGTGCTAATTGGGCAAGGGGACGTAGTGTTGGTAATGAAACGAAAACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAG'); -INSERT INTO sequenceanalysis.ref_nt_sequences ("name",category1,category2,mol_type,species,sequence) VALUES ('SHIV-1157ipd3N4', 'Virus', 'SHIV-1157ipd3N4', 'RNA', 'SIV', 'CAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGACTTGAAGGAGAGTGAGAGACTCCTGAGTACGGCTGAGTGAAGGCAGTAAGGGCGGCAGGAACCAACCACGACGGAGTGCTCCTATAAAGGCGCGGGTCGGTACCAGACGGCGTGAGGAGCGGGAGAGGAAGAGGCCTCCGGTTGCAGGTAAGTGCAACACAAAAAAGAAATAGCTGTCTTTTATCCAGGAAGGGGTAATAAGATAGAGTGGGAGATGGGCGTGAGAAACTCCGTCTTGTCAGGGAAGAAAGCAGATGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAACAAGTAGACCAACAGCACCATCTAGCGGCAGAGGAGGAAATTACCCAGTACAACAAATAGGTGGTAACTATGTCCACCTGCCATTAAGCCCGAGAACATTAAATGCCTGGGTAAAATTGATAGAGGAAAAGAAATTTGGAGCAGAAGTAGTGCCAGGATTTCAGGCACTGTCAGAAGGTTGCACCCCCTATGACATTAATCAGATGTTAAATTGTGTGGGAGACCATCAAGCGGCTATGCAGATTATCAGAGATATTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCAGCAGTAAAGAATTGGATGACTCAAACACTGCTGATTCAAAATGCTAACCCAGATTGCAAGCTAGTGCTGAAGGGGCTGGGTGTGAATCCCACCCTAGAAGAAATGCTGACGGCTTGTCAAGGAGTAGGGGGGCCGGGACAGAAGGCTAGATTAATGGCAGAAGCCCTGAAAGAGGCCCTCGCACCAGTGCCAATCCCTTTTGCAGCAGCCCAACAGAGGGGACCAAGAAAGCCAATTAAGTGTTGGAATTGTGGGAAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTCTCTCTTTGGAGGAGACCAGTAGTCACTGCTCATATTGAAGGACAGCCTGTAGAAGTATTACTGGATACAGGGGCTGATGATTCTATTGTAACAGGAATAGAGTTAGGTCCACATTATACCCCAAAAATAGTAGGAGGAATAGGAGGTTTTATTAATACTAAAGAATACAAAAATGTAGAAATAGAAGTTTTAGGCAAAAGGATTAAAGGGACAATCATGACAGGGGACACCCCGATTAACATTTTTGGTAGAAATTTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACACCCTGCAGGACTAGCAAAAAGGAAAAGAATTACAGTACTGGATATAGGTGATGCATATTTCTCCATACCTCTAGATGAAGAATTTAGGCAGTACACTGCCTTTACTTTACCATCAGTAAATAATGCAGAGCCAGGAAAACGATACATTTATAAGGTTCTGCCTCAGGGATGGAAGGGGTCACCAGCCATCTTCCAATACACTATGAGACATGTGCTAGAACCCTTCAGGAAGGCAAATCCAGATGTGACCTTAGTCCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGACTCTAACAGAGGAAGTTCAGTGGACTGAGATGGCAGAAGCAGAATATGAGGAAAATAAAATAATTCTCAGTCAGGAACAAGAAGGATGTTATTACCAAGAAGGCAAGCCATTAGAAGCCACGGTAATAAAGAGTCAGGACAATCAGTGGTCTTATAAAATTCACCAAGAAGACAAAATACTGAAAGTAGGAAAATTTGCAAAGATAAAGAATACACATACCAATGGAGTGAGACTATTAGCACATGTAATACAGAAAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAAGCATTTCTCATGGCATTGACAGACTCAGGGCCAAAGGCAAATATTATAGTAGATTCACAATATGTTATGGGAATAATAACAGGATGCCCTACAGAATCAGAGAGCAGGCTAGTTAATCAAATAATAGAAGAAATGATTAAAAAGTCAGAAATTTATGTAGCATGGGTACCAGCACACAAAGGTATAGGAGGAAACCAAGAAATAGACCACCTAGTTAGTCAAGGGATTAGACAAGTTCTCTTCTTGGAAAAGATAGAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACATCTACACACAGATAATGGTGCTAACTTTGCTTCGCAAGAAGTAAAGATGGTTGCATGGTGGGCAGGGATAGAGCACACCTTTGGGGTACCATACAATCCACAGAGTCAGGGAGTAGTGGAAGCAATGAATCACCACCTGAAAAATCAAATAGATAGAATCAGGGAACAAGCAAATTCAGTAGAAACCATAGTATTAATGGCAGTTCATTGCATGAATTTTAAAAGAAGGGGAGGAATAGGGGATATGACTCCAGCAGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACTAAAGATCTACAAAAGGTTTGCTATGTGCCCCATTTTAAGGTCGGATGGGCATGGTGGACCTGCAGCAGAGTAATCTTCCCACTACAGGAAGGAAGCCATTTAGAAGTACAAGGGTATTGGCATTTGACACCAGAAAAAGGGTGGCTCAGTACTTATGCAGTGAGGATAACCTGGTACTCAAAGAACTTTTGGACAGATGTAACACCAAACTATGCAGACATTTTACTGCATAGCACTTATTTCCCTTGCTTTACAGCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAAAATACAGATACTTGTGTTTAATACAAAAGGCTTTATTTATGCATTGCAAGAAAGGCTGTAGATGTCTAGGGGAAGGACATGGGGCAGGGGGATGGAGACCAGGACCTCCTCCTCCTCCCCCTCCAGGACTAGCATAAATGGAAGAAAGACCTCCAGAAAATGAAGGACCACAAAGGGAACCATGGGATGAATGGGTAGTGGAGGTTCTGGAAGAACTGAAAGAAGAAGCTTTAAAACATTTTGATCCTCGCTTGCTAACTGCACTTGGTAATCATATCTATAATCGTCACGGAGACACTCTAGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCGCATGCTGTAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCAGGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCCTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAATCTATACAAATAGAAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTAATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCATCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAAAACTACTTTATTCTGTGCATCAAATGCTAAAGCATATGAGAAAGAAGTACATAACATCTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTTTTGGGAAATGTAACAGAAAATTTTAACATGTGGAAAAATGACATGGTGGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACTTCACTCTGTGTCACTTTAAAGTGTAGTAATTTTACCGGGAAGAGTAATGTTACCTACAAAGGGGATATGGAAGTAAAAAATTGCTCTTTCAATGTAACCACAGAAATAAGAGATAAGAAGCAGAAAGTGTATGCTCTTTTTTATAGACTTGATATAACACCACTTGATGACAACTCTAGTGAGTATATATTAATAAATTGCAATTCCTCAACCATAACACAAGCCTGTCCAAAGGTCAATTTTGACCCAATTCCTATACATTATTGTGCTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGACATTTAATGGGACAGGACCATGCCATAATGTCAGTACAGTACAATGTACACATGGAATTAAGCCAGTGGTATCAACTCAACTACTGTTAAACGGTAGCCTAGCAGAAGGGGAGATAATAATTAGATCTGAAAATCTGACAGACAATGTCAAAACAATAATAGTACACTTTAATGAATCTGTAGAAATTACTTGTACAAGACCCAACAATAATACAAGAAAAAGTATAAGCATAGGACCAGGACAAGCAATCTATGCCACAGGTGATATAATAGGAGACATAAGACAAGCACACTGTAACATTAGTAAAGAAAATTGGAACAAAACTTTACAATGGGTAAGGGGAAAATTAAAAGAACACTTCCCTAATAAAACAATAGTATTTAAACCATCCTCAGGAGGGGATCTAGAAATTACAACACATAGCTTTAATTGTAGAGGAGAATTTTTCTATTGCAACACATCAAAACTGTTTAATAGTACAGACAATAGTACACACATGGGTACAGAAAATAATACAATCATCACAATCCCATGTAGAATAAAACAAATTATAAACATGTGGCAGGAGGTAGGACGAGCAATGTATGCCCCCCCCATAGAAGGAAACATAACATGTAAATCAAATATCACAGGACTACTACTGGTACGTGATGGAGGATGGGACAACAGTACAAATGACACAGAAACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAGGTGGTAGAAGTCAAGCCATTGGGAATAGCACCCACTAAGGCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGACAACTGTTGTCTGGTATAGTGCAGCAGCAAGACAATTTGCTGAGAGCTATAGAGGCGCAACAACATATGTTGCAACTCACAGTCTGGGGCATTAAGCAGCTCCAGGCGAGAGTCCTGGCTATAGAAAGATACCTACAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTGCTGTGCCTTGGAACGACAGTTGGAGTAATAAATCTCAAACAGATATTTGGGAGAACATGACCTGGATGCAGTGGGATAGAGAAATTAGTAGACACACAGACACAATATACAGGTTGCTTGAAGACTCACAAAACCAGCAGGAGAAAAATGAAAAAGATTTATTAGCATTGGACAGTTGGAAAAATTTGTGGAATTGGTTTAGCATAACAAGGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCCTGATAGGTTTGAGAATAATTTTTGCTGTGCTCTCGATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCACTTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGACCGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGACTGTGGAACTCCTGGGACGCAGAGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACTGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAACGCCACAGCCATAGCAGTAAGACAATATGGGTGGAGCTATTTCCATGAGGCGGTCCAGGCCGTCTGGAGATCTGCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGAGATTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTCGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGCATATGAATACTCCATGGAGAAACCCAGCTGAAGAGGGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGGAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCTCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTGGAAGGGATTTATTACAGTGCAAGAAGACATAGAATCTTAGACATATACTTAGAAAAGGAAGAAGGCATCATACCAGATTGGCAGGATTACACCTCAGGACCAGGAATTAGATACCCAAAGACATTTGGCTGGCTATGGAAATTAGTCCCTGTAGATGTATCAGATGAGGCACAGGAGGATGAGGAGCATTACTTAATGCATCCAGCTCAAACTTCCCAGTGGGATGACCCTTGGGGAGAGGTTCTAGCATGGAAGTTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTACTTAAAGCCCTCTTCAATAAAGCTGCCATTTAGAAGTA') -; - - - - - - --- ---------------------------- --- Table structure for sequenceAnalysis.ref_aa_sequences --- ---------------------------- -EXEC core.fn_dropifexists 'ref_aa_sequences', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.ref_aa_sequences ( - RowId INT IDENTITY(1,1) NOT NULL, - ref_nt_id integer NOT NULL, - - name varchar(255) not null, - exons varchar(255) DEFAULT NULL, - start_location integer DEFAULT NULL, - - sequence text NOT NULL, - comments text default null, - - status bit DEFAULT 1, - - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_ref_aa_sequences PRIMARY KEY (rowId), - CONSTRAINT UNIQUE_ref_aa_sequences UNIQUE (ref_nt_id, name) --- CONSTRAINT fk_ref_aa_sequences_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION - -); - - --- ---------------------------- --- Data for sequenceAnalysis.ref_aa_sequences --- ---------------------------- -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1309-2841', '1309', 'MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2484-5666', '2484', 'VLELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5596-6240', '5596', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6068-6406', '6068', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6407-6712', '6407', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSML*', 'vpR', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6558-6853;9062-9158', '6558', 'METPLREQENSLESSNERSSCISEADASTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6784-6853;9062-9315', '6784', 'MSNHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRKRRWRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTEDSRSPQD*', 'Rev', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6860-9499', '6860', 'MGCLGNQLLIAILLLSVYGIYCTLYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSEVALNVTESFDAWNNTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTANQKPKEQHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPKWNNETWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQQDPALPTREGKERDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQILQPILQRLSATLQRIREVLRTELTYLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9333-10124', '9333', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDIDEEDDDLVGVSVRPKVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1041-2561', '1054', 'MGARNSVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTAETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQKRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLTPTAPPEDPAVDLLKNYMQLGKQQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('218-1741', '218', 'MGARNSVLSGKKADELEKIRLRPNGKKKYMLKHXVWAANELDRFGLAESLLDNKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTADKMPATSRPTAPPSGRGGNYPVQQXGGNYVHLPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGEHQAAMQIIREIINEEAADWDLQHPQPGPLPAGQLREPRGSDIAGTTSTVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGIGGPGQKARLMAEALKEALRPDQLPFAAVQQKGQRRTIKCWNCGKEGHSARQCRAPRRQGCWXCGXTGHVMAKCPERQAGFLGLGPWGKKPRNFPMAQMPQGLIPTAPPEDPAVDLLKNYMKMGRKQRENRERPYKEVTEDLLHLNSLFGEDQ*', 'Gag', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1507-4566', '1507', 'KTGGFFRAWPMGKEAPQFPHGPDASGADTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQGGDRGFAAPQFSLWRRPVVTAYIEEQPVEVLLDTGADDSIVAGIELGPNYTPKVVGGIGGFINTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLKPGKEGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRKANPDVTLIQYMDDILIASDRTDLEHDRVVLQLKELLNGIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPIEATVIKSQDNQWSYKIHQEDKVLKVGKFAKVKNTHTNGVRLLAHVVQKIGKEALVIWGEVPKFHLPVEREIWEQWWTDYWQVTWIPDWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALXDSGPKANIIVDSQYVMGIIAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIETIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGEAREVA*', 'Pol', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4496-5140', '4496', 'MEEEKNWIVVPTWRIPERLERWHSLIKHLKYNTKDLQMACYVPHHKVGWAWWTCSRVIFPLRDETHLEVQGYWNLAPEKGWLSTHAVRITWYSRNFWTDVTPDYADTLLHSTYFPCFSEGEVRRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQGEDPTWKQWGRNNRRXLRMAKQNSRRNKQGSSKSPAEGANFPGLAKVLGILA*', 'Vif', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4968-5306', '4968', 'MSDPRERIPPGNSGEETIEEAFEWLNRTVEGINRAAVNHLPRELIFQVWRRSWEYWHDXMGMSESYTKYRYLCLIQKALFVHCKKGCRCLGEXHGAGGWRTGPPPPPPPGLA*', 'vpX', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5308-5613', '5308', 'MAERPPEDEAPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIRILQRALFIHFRSGCAHSRIGQSRGGNPLSTIPPSRDML*', 'vpR', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5755-8418', '5755', 'MGCLGNQLLIALLLVSALEIYCVQYVTVFYGVPAWKNATIPLFCTTRNRDTWGTTQCLPDNDDYSELAIXITEAFDAWNNTVTEQAIEDVWNLFETSIKPCVKLTPLCIAMRCNKTETDRWGLTRNAGTTTTTTTTTTAATPSVAENVINESNPCIKNNSCAGLEQEPMIGCKFNMTGLKRDKRIEYNETWYSRDLICEQSANESESKCYMHHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGKSNRTIISLNKYYNLTMRCRRPGNKTVLPVTIMSGLVFHSQPINERPKQAWCWFGGSWKEAIQEVKETLVKHPRYTGTNDTKKINLTAPAGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDQKXSRWRQQNTRERQKKNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIAEIDWTNNNETNITMSAEVAELYRLELGDYKLVEITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVCHTTVPWPNETLVPNWSNMTWQEWERQVDFLEANITQLLEEAQIQQEKNMYELQKLNSWDIFGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSSPPAYVQQIPIHKGQEPPTKEGEEGEGGDRGGNRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDWLLRXYQXLQPVLQSLSTTXQRVREVIRIGIAYLQYGWRYFQEAVQAWWKFARETLASAWRDIWETLGRVGRGILAIPRRXRQGXELXLL*', 'Env', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5450-5748;7978-8077', '5450', 'MIDMETPLKEQENSLESCREHSSSISEVDVPTPESANLEEEILYQLYRPLETCYNKCYCKRCCYHCQHCFLKKGLGICYEQHRRRTPKKTKANPLPASNQIPIHKGQEPPTKEGEEGEGGDRGGNRSWPWQI*', 'Tat', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5685-5748;7978-8219', '5685', 'MSSTEEELRKRLRLIHFLHQTTDPYPQGPGTANQRRRRRRRWRQRWQQILALADRIYSFPNPPTDTPLDLAIQQLQGLAIEDLPXPPTSXPEPLNDVAKSP*', 'Rev', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8252-9043', '8252', 'MGGVISKKQCRRGGNLRERLLQARGETYGRLWEGLEEGYSQSXGASGKGLSSLSCEPQKYSEGQYMNTPWRNPAAERAKLGYRQQNMDDVDDEDDDLVXVSVHPRVPLRAMTYKLAIDMSHFIKEKGGLEGIYYNEKRHRILDMYMEKEEGIIPDWQNYTSGPGTRYPMYYGWLWKLVPVDVSDEAQEDETHCLMHPAQTHQWDDPWGEVLAWKFDPELAYSYKAFIKYPEEFGSKSXLSEEEVKRRLTARGLIKMADKKETS*', 'Nef', '4'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('536-2068', '536', 'MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1714-4893', '1711', 'LELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4823-5467', '4823', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5295-5633', '5295', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5634-5939', '5634', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSML*', 'vpR', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5948-6162;8487-8580', '5948', 'MEPVDPRLEPWKHPGSKPKTACTNCYCKKCCFHCQVCFTTKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPSSQPRGDPTGPKEQKKKVERETETDPVHQ*', 'Tat', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6087-6162;8487-8761', '6087', 'MAGRSGDSDEELIRTVRLIKLLYQSNPPPSLEGTRQARRNRRRRWRERQRQIRSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE*', 'Rev', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6179-6424', '6179', 'MQPIQIAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*', 'vpU', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6339-8948', '6339', 'MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWREATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNNMVDQMHEDIISLWDESLKPCVKLTPLCVTLNCTNLNITKNTTNLTSSSWGMMEEGEIKNCSFYITTSIRNKVKKEYALFNRLDVVPVKNTSNTKYRLISCNTSVITQACPKVSFQPIPIHYCVPAGFAILKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDIVIRSEDFTDNVKTIIVQLNESVVINCTRPNNNTRERLSIGPGRAFYARRNIIGDIRQAHCNISRAKWNNTLQQIVIKLREKFRNKTIAFNQSSGGDPEIVMHSFNCGGEFFYCNTAQLFNSTWNVAGGTNGTEGNDIITLQCRIKQIINMWQKVGKAMYAPPITGQIRCSSNITGLLLTRDGGNSTETETEIFRPGGGDMRDNWRSELYKYKVVRIEPIGVAPTRAKRRTVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQNMLRLTVWGIKQLQARVLALERYLRDQQLMGIWGCSGKLICTTSVPWNVSWSNKSVDDIWNNMTWMEWEREIDNYTDYIYDLLEKSQTQQEKNEKELLELDKWASLWNWFDITNWLWYIRLFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSFQTLLPASRGPDRPEGTEEEGGERDRDRSGPSVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8782-9573', '8782', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDIDEEDDDLVGVSVRPKVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '3'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2216-5386', '2229', 'VLELWEGGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVKIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNLPIAKVEPVKVTLKPGKVGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVERDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKTNIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5316-5960', '5316', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPERGWLSTYAVRITWYSRNFWTDVTPDYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCKFPRAHRYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGSKPPTKGADFPGLAKVLGILA*', 'Vif', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5788-6126', '5801', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSQSYVKYRYLCLMQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6127-6420', '6140', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCNHSRIGQPGGGNPLSTIPPS*', 'vpR', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6278-6573;8785-8884', '6291', 'METPLREQENSLESSNERSSCILEADATTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNNRLIPNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6504-6573;8785-9041', '6517', 'MSSHEREEELRKRLRLIHLLHQTIDSYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTKGSRSPQD*', 'Rev', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9059-9802', '9072', 'MGGAISMRRSKPAGDLRQKLLRARGETYGRLLGEVEDGSSQSLGGLGKGLSSRSCEGQKYNQGQYMNTPWRNPAEEKEKLAYRKQNMDDIDEEDDDLVGVSVRPKVPLRAMTYKLAIDMSHFIKEKGGLEGIYYSARRHRILDMYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDERHYLMQPAQTSKWDDPWGEVLAWKFDPTLAYTYEAYARYPEELEASQACQRKRLEEG*', 'Nef', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6580-9225', '6593', 'MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSSTTITTAAPTSAPVSEKIDMVNETSSCIAQNNCTGLEQEQMISCKFTMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTSITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIKYIQYGIYVVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQ*THTQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRAYQILQPILQRLSATLRRVREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWRDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '2'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('336-1838', '336', 'MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAADTGHSNQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ*', 'Gag', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5377-5591;7925-7970', '5377', 'MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSQPRGDPTGPKE*', 'Tat', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5516-5591;7925-8199', '5516', 'MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE*', 'Rev', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5608-5856', '5608', 'MQPIPIVAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*', 'Vpu', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5771-8341', '5771', 'MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL*', 'Env', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8343-8963', '8343', 'MGGKWSKSSVIGWPTVRERMRRAEPAADRVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKIEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*', 'Nef', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4587-5165', '4587', 'MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*', 'Vif', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5105-5341', '5105', 'MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFQNWVST*', 'Vpr', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1309-2841', '1309', 'MGARNSVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTAETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPKKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLTPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2484-5666', '2484', 'MLELWERRTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNLPIAKVEPVKVALKPGKVGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKMHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVERDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQVNSDLGTWQMDCTHLEGKIVIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPVTHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5596-6240', '5596', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHYKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPERGWLSTYAVRITWYSRNFWTDVTPDYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKNQVPSLQYLALRVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6068-6406', '6068', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6407-6700', '6407', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCNHSRIGQPGGGNPLSTIPPS*', 'vpR', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6558-6853;9065-9164', '6558', 'METPLREQENSLESSNERSSCISEADATTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNNRSIPNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6784-6853;9065-9321', '6784', 'MSSHEREEELRKRLRLIHLLHQTTDPYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPGALCDPTENSRSPQD*', 'Rev', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('25-2175', '25', 'MEDFVRQCFNPMIVELAEKAMKEYGEDLKIETNKFAAICTHLEVCFMYSDFHFINEQGESIIVEPEDPNALLKHRFEIIEGRDRTMAWTVVNSICNTTGAEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGTMRRLADQSLPPNFSCIENFRAYVDGFEPNGYIEGKLSQMSKEVNARIEPFLKTTPRPIRLPDGPPCFQRSKFLLMDSLKLSIEDPNHEGEGIPLYDAIKCMRTFFGWKEPSVVKPHEKGINPNYLLSWKQVLEELQDIESEEKIPRTKNMKKTSQLKWALGENMAPEKVDFDDCKDISDLKQYDSDEPELRSFSSWIQNEFNKACELTDSIWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRSAIGQVSRPMFLYVRTNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENRSETWPIGESPKGVEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDIGGLYEAIEECLINDPWVLLNASWFNSFLTHALR*', 'PA', '7'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6860-9505', '6860', 'MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNXDYSELAXNVTESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDKWGLTKSSTTTTASTTRTTSAKIDMVNETSSCITHNNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSVIQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGNWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPRGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNLTLTTQKLRERHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPDWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIRYIQYGIYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYSQQIHTQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQILQPILQGLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9339-10130', '9339', 'MGGAISMRRSKPAGDLRQRLLRARGETYGRLLGEVEDGSSQSLGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDVDEEDDDLVGVPVMPRVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDMYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTAQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '6'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5688-5759;7992-8225', '5688', 'MSSNEEELRRRLRLIHFLHQTSKYYPEGPGTANQRRRRRRRWRQRWQQILALADRIYSFPDPPANTPLDLAIQQLQRLAIEELPNPPASAPEPLKDIAESP*', 'Rev', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8255-9046', '8255', 'MGGVTSKKQRKXGGNLRERLLQARGETYGRLWDGLEGDYSQSQDGSGRGLXSLSCEPQKYCXGQFMNTPWRNPRAEGAKLDYRQQNMDDVDDDDDDLVGFPVTPXVPXRTMTYKLAIDMSHFIKEKGGLEGIYYSDRRHKILNLYLEKEEGIIPDWQNYTAGPGIRYPMCFGWLWKLVPVDVSDEAQEDEXHCLMHPAQTSQWDDPWGEVLAWKFDPXLAYNYKAFVKHPEEFGSXSGLSEEEVKRRLTARGLLKMADKKETS*', 'Nef', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('19-2292', '19', 'MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSERGRWTKNTETGAPQLNPIDGPLPKDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCIETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLIANESGRLIDFLKDVMKSMDRDEVEITTHFQRKRRVRDNVTKKMVTQRTIGKKKHKLDKRSYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNILSIAPIMFSNKMARLGKGYMFESKSMKLRTQIPAEMLANIDLKYFNDSTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLGVSILNLGQKRYTKTTYWWDGLQSSDDFALIVNAPNHAGIQAGVDRFYRTCKLLGINMSKKKSYINRTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFEIKKLWDQTRSKAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDEDYQGRLCNPLNPFVSHKEIESVNNAVMMPAHGPAKNMEYDAVATTHSWVPKRNRSILNTSQRGILEDEQMYQRCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEFAEIMKTCSTIEDLRRQK*', 'PB1', '8'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('28-2307', '28', 'MERIKELRNLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPSLRMKWMMAMKYPITADKRITEMIPERNEQGQTLWSKVNDAGSDRVMISPLAVTWWNRNGPVASTIHYPKIYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEAQDVIMEVVFPNEVGARILTSESQLTITKEKKEELQNCKISPLMVAYMLERELVRKTRFLPVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLLEMCHSTQIGGTRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTSGSSVKREEEMLTGNLQTLKLTVHEGYEEFTMIGKRATAILRKATRRLIQLIVSGRDEQSIVEAIVVAMVFSQEDCMVKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFLNWGIEPIDNVMGMIGILPDMTPSTEMSMRGVRVSKMGVDEYSNAEKVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLINTYQWIIRNWETIKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKKLTVLGKDAGTLTEDPDEGTAGVESAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN*', 'PB2', '9'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('46-1542', '46', 'MASQGTKRSYEQMETDGERQNATEIRASVGRMIGGIGRFYIQMCTELKLNDYEGRLIQNSLTIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPVYKRVDGKWVRELVLYDKEEIRRIWRQANNGDDATAGLTHIMIWHSNLNDTTYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTMVLELIRMIKRGINDRNFWRGENGRKTRIAYERMCNILKGKFQTAAQKAMMDQVRESRNPGNAEIEDLTFLARSALILRGSVAHKSCLPACVYGPAVASGYDFEKEGYSLVGVDPFKLLQTSQVYSLIRPNENPAHKSQLVWMACNSAAFEDLRVSSFIRGTKVLPRGKLSTRGVQIASNENMDAIVSSTLELRSRYWAIRTRSGGNTNQQRASAGQISTQPTFSVQRNLPFDKTTIMAAFTGNTEGRTSDMRAEIIKMMESARPEEVSFQGRGVFELSDERATNPIVPSFDMSNEGSYFFGDNAEEYDN*', 'NP', '10'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('33-1730', '33', 'MKAKLLVLLCTFTATYADTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCLLKGIAPLQLGNCSVAGWILGNPECELLISKESWSYIVETPNPENGTCYPGYFADYEELREQLSSVSSFERFEIFPKGSSWPNHTVTGVSASCSHNGKSSFYRNLLWLTRKNGLYPNLSMSYVNNKEKEVLVLWGVHHPPNIGDQRALYHTENAYVSVVSSHYSRRFTPEIAKRPKVRDQEGRINYYWTLLEPGDTIIFEANGNLIAPWYAFALSRGFGSGIITSNAPMDECDAKCQTPQGAINSSLPFQNVHPVTIGECPKYVRSAKLRMVTGLRNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNSVIEKMNTQFTAVGKEFNKLERRMENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCNNECMESVKNGTYDYPKYSEESKLNREKIDGVKLESMGVYQILAIYSTVASSLVLLVSLGAISFWMCSNGSLQCRICI*', 'HA', '11'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('21-1433', '21', 'MNPNQKIITIGSISIAIGIISLMLQIGNIISIWASHSIQTGSQNHTGVCNQRIITYENSTWVNHTYVNINNTNVIAGKDKTSVTLAGNSSLCSISGWAIYTKDNSIRIGSKGDVFVIREPFISCSHLECRTFFLTQGALLNDKHSNGTVKDRSPYRALMSCPLGEAPSPYNSKFESVAWSASACHDGMGWLTIGISGPDNGAVAVLKYNGIITETIKSWKKQILRTQESECVCVNGSCFTIMTDGPSNGAASYKIFKIEKGKVTKSIELNAPNFHYEECSCYPDTGTVMCVCRDNWHGSNRPWVSFNQNLDYQIGYICSGVFGDNPRPKDGEGSCNPVTVDGANGVKGFSYKYGNGVWIGRTKSNRLRKGFEMIWDPNGWTDTDSDFSVKQDVVAITDWSGYSGSFVQHPELTGLDCIRPCFWVELVRGLPKENTTIWTSGSSISFCGVNSDTANWSWPDGAELPFTIDK*', 'NA', '18'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('27-56;529-864', '27', 'MDSHTVSSFQDILMRMSKMQLGSSSGDLNGMITQFESLKLYRDSLGEAVMRLGDLHSLQHRNGKWREQLGQKFEEIRWLIEEVRHKLKTTENSFEQITFMQALQLLFEVEQEIRTFSFQLI*', 'NS2', '20'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('27-719', '27', 'MDSHTVSSFQVDCFLWHVRKQVADQGLGDAPFLDRLRRDQKSLKGRGSTLGLNIETATCVGKQIVERILKEESDEAFKMTMASALASRYLTDMTIEEMSRDWFMLMPKQKVAGPLCVRMDQAIMDKNIILKANFSVIFDRLENLTLLRAFTEEGAIVGEISPLPSLPGHTNEDVKNAIGVLIGGLEWNDNTVRVSETLQRFAWRSSNETGGPPFTPTQKRKMAGTIRSEV*', 'NS1', '20'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('26-646', '26', 'MSLLTEVETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYRKLKREITFHGAKEIALSYSAGALASCMGLIYNRMGAVTTESAFGLICATCEQIADSQHKSHRQMVTTTNPLIRHENRMVLASTTAKAMEQMAGSSEQAAEAMGGC*', 'M1', '19'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('26-52;742-1008', '26', 'MSLLTEVETPIKNEWGCRCNDSSDPLVVAASIIGIVHLILWIIDRLFSKSIYRIFKHGLKRGPSTEGVPESMREEYREEQQNAVDADDGHFVSIELE*', 'M2', '19'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('221-1744', '221', 'MGARNSVLSGKXADELEKIRLRPGGXKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVXETGTADKMPVTSRPTAPPSGRGGNYPVQQVGGNYTHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCXGEHQSAMQIIREIINEEAADWDLQHXQPGPIPAGQLRDPRGSDIAGTTSTVEEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLXGLGMNPTLEEMLTACQGVGGPGQKARLMAEALKEALTPGQLPFAAVQQRGQRKTIKXWNCGKEGHSARQCRAPRRQGCWKCGKTGHVMAKCPERQAGFLGLGPWGKKPRNFPMAQIPQGLTPTAPPEDPAVDLLRNYMKMGRRQRENRERPYKEVTEDLLHLNSLFGEDQ*', 'Gag', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1501-4569', '1501', 'MPRETGGFFRAWPMGKEAPQFPHGPDTSGVDTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQGGDGGFAAPQFSLWRRPVVTAYIEEQPXEVLXDTGADDSXVAGIELGPNYTPKIVGXIGGFXNTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLKPGKDGPKLRQWXLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRKANPDVTLIQXMDDILIASDRTDLEHDRVVLQLKELLNSMGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPXKETWTXNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEXNKIILSQEQEGCXYQEGXPLEATVIKSQDNQWSYKIHQEDXILKVGKFAKIKNTHTNGVRLLAHVVQKIGKEAIVIWGQVPKFHXPVEREIWEQWWTDYWQVTWIPEWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSKEGKAGYVTDRGRDRTKPLXQTTNQQAEXEAFHLALADSGPKANIIVDSQYVMGIIAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEXDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGXVEAMNHHLKTQIDRXREQANSIXTIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGEAREVA*', 'Pol', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4499-5143', '4499', 'MEEEKSWIAVPTWRIPGRLEKWHSLIKHLKYNTKDLQKACYVPHHKVGWAWWTCSRXIFPLRDESHLEVQGYWNLTPEKGWLSTYAVRITWYSRNFWTDVTPDYADTLLHGTYFPCFSEGEVRRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQGEDPTWKQWRGNSRRGLRLARKNSRRNKQGSSESFAEGVNFPGLAKVLGILA*', 'Vif', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4971-5309', '4971', 'MSDPRERIPPGNSGEETVGEAFDWLERTVEEINRAAVNHLPRELIFQVWRRSWEYWHDEIGMSASYTKXRYLCLIQKALFMHCKKGCRCLGGEHGAGGWRPGPPPPPPPGLA*', 'vpX', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5311-5616', '5311', 'MTERPPEDEAPQREPWDEWVVEVLEEVKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIKILQRALFIHFRGGCNHSRIGHSGGGNPLSTIPPSRGVL*', 'vpR', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5462-5752;7985-8080', '5462', 'METPLKEQESSLKSSREHSSSISEVDATTPESATLEEEILSQLYRPLEACYNKCYCKKCCYHCQHCFLKKGLGICYEQQRRRTPKKTKANTFSASNKSLSRRARNRQPKKEKKETVETEVATDLGLGR*', 'Tat', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5688-5752;7985-8222', '5688', 'MSSNEEELRRRLRLIHFLHQTSPYPEGPGTANQRRRRRRRWRQRWQQILALADRIXSFPDPPANTPLELAXQQLQRLAIEEXPDPPASAPEPLKDTAXSP*', 'Rev', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5758-8421', '5758', 'MGCLGNQLLIALLLLSALGIXCVQYVTVFYGVPAWKNATIPLFCATKNRDTWXTTQCLPDNDDYSELAINVTEAFDAWDNTVTEQAIEDVWNLFQTSIKPCVKLTPLCIAMRCNKTETDRWGLTGKPTTTASTTTKTTSKPSVITAXVINEGDPCIKNNSCAGLEXXPMIGCKFNMTGLRKDKQREYNETWYSRDIVCEQNSNEHETASKCYMNHCNTSVIRESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFEPNCTKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRSNRTIISLNKYYNLTIRCRRPGNKTVLPVTIMSGLVFHSQPINEXPKQAWCWFGGNWKXAIREVKETLVKHPRYTGTNNTEKINXTAPAGGDPEVTFMWTNCRGEFLYCKMNWFXNWVDETXGFRWXXQNPKEKKRRNYVPCHIRQVXXTWHRVGKNVYLPPREGDLTCNSTVTSLIAEIDWIDKNETNITMSAEVAELYRLELGDYKLVXITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTXNLQTRVTAIEKYLKDQXQLNSWGCAFRQVCHTTVPWPNDTLXPNWXNMTWQEWERQVDFLEAXITQLXEEAQIQQEKXMYELQKLNSWDIFGNWFDLTSWIXYIQYGVLIVLGVIGLRIVIYVXQMLARLRQGYRPVFSSPPVYVQQIPIQKGQEPPTKEGEEGDGGDRGGNRSWPWQIEXIHFLIRQLIRLLSWXFNSCRDWLLRSXQILQPVLQSLSRILQXVREVIRVEITYLQYGWRYFQEAAQXWWKFARETLASAWGDLWETLGRVGRRLLAIPRRIRQGLXLTLL*', 'Env', '12'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1309-2841', '1309', 'MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2484-5666', '2484', 'VLELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5596-6240', '5596', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6068-6406', '6068', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6407-6712', '6407', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSML*', 'vpR', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6558-6853;9062-9158', '6558', 'METPLREQENSLESSNERSSCISEADASTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6784-6853;9062-9315', '6784', 'MSNHEREEELRKRLRLIHLLHQTNPYPTGPGTANQRRQRKRRWRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTEDSRSPQD*', 'Rev', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6860-9499', '6860', 'MGCLGNQLLIAILLLSVYGIYCTLYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSEVALNVTESFDAWNNTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTANQKPKEQHKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPKWNNETWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFGNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQQDPALPTREGKERDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRVYQILQPILQRLSATLQRIREVLRTELTYLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9333-9569', '9333', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQVSFYKRKGGTGRDLLQCKKT*', 'Nef', '13'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('221-1744', '221', 'MGARNSVLSGKXADELEKIRLRPGGXKKYMLKHVXWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVXETGTADKMPXTSRPTAPPSGRGGNYPVQQVGGNYTHLXLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMXNCXGEHQSAMQIIREIINEEAADWDLQHXQPXPIPAGQLRDPRGSDIAGTTSTVEEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDXFYKSXRAEQTDPAVKNWMTQTLLIQNANPDCKLVLXGLGMNPTLEEMLTACQGVGGPGQKARLMAEALXEALTPGQLPFAAVQQRGQRKTIKXWNCGKEGHSARXCRAPRRQXCWKCGKTGHVMAKCPXRQAGFLGLGPWGKKPRNFPMAQIPQGLTPTAPPEDPAVDLLRNXMKMGRRQRENRERPYKEVTEDLLHLNSLFGEDQ*', 'Gag', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1501-4569', '1501', 'MPRXTGGFFRAWPMGKEAPQFPHGPDTSGVDTNCSPRGSSCGSTEELXEDGQKAEGEQRETLQGGDGGFAAPQFSLWRRPVVTAXIEEQPXEVLLDTGADDSXVAGIELGPNYTPKIVGXIGGFINTKEYKDVKIKVLGXXIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKXEPIKVTLKPGKDGPKLRQWXLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRKANPDVTLIQXMDDILIASDRTXLEHDRVVLQLKELLNSMGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPXXETWTXNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEXNKIILSQEQEGCXYQEGXPLEATVIKSQDNQWSYKIHQEDXILKVGKFAKIKNTHTNGVRLLAHVVQKIGKEAIVIWGQVPKFHXPVEREXWEQWWTDYWQVTWIPEWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSKEGKAGYVTDRGRDRTKPLEQTTNQQAEXEAFHLALADSGPKANIIVDSQYVMGIIAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEXDHLXSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGXAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLXTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGXVEAMNHHLKTQIDRXREQANSIXTIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKXLDSGSHLEDTGEAREVA*', 'Pol', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4499-5143', '4499', 'MEEEKXWIAVPTWRIPGRLEKWHSLIKHLKYNTKDLQKACYVPHHKVGWAWWTCSRXIFPLRDXSHLEVQGYWNLTPEKGWLSTYAVRITWYSXNFWTDVTPDYADTLLHGTYFPCFSEGEVRRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQGEXPTWKQWRGNXRRGLRLAXKNSRRNKQGSSESFAEGVNFPGLAKVLGILA*', 'Vif', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4971-5309', '4971', 'MSDPRERXPPGNSGEEXVGEAFDWXERTVEEINRAAVNHLPRELIFQVWRRSWEYWHDEIGMSASYTKXRYLCLIQKALFMHCKKGCRCLGGEHGAGGWRPGPPPPPPPGLA*', 'vpX', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5311-5616', '5311', 'MTERPPEDEAPQREPWDEWVVEVLEEVKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIXILQRALFIHFRGGCNHSRIGHSGGGNPLSTIPPSRGVL*', 'vpR', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5462-5751;7984-8080', '5462', 'METPLKEQESSLXSSREHSSSISEVDATTPESATLEEEILSQLYRPLEACYNKCYCKKCCYHCQHCFLKKGLGICYEQQRRRTPKKTKANTFSASNKSLSRRARNRQPKKEKKETVETEVATDLGLGR*', 'Tat', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5688-5759;7992-8222', '5688', 'MSSNEEELRRRLRLIHFLHQTSKYPEGPGTANQRRRRRRRWRQRWQQILALADRIXSFPDPPANTPLELAXQQLQXLAIEEXPDPPASAPEPLKDTAXSP*', 'Rev', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5758-8421', '5758', 'MGCLGNQLLIALLLLSALGISCVQYXTVFYGXPAWKNATXPLFCAXXNRXTWXTTQCLPDNDDYSELAINVTEAFDAWDNTVTEQAIEDVWNLFQTSIKPCVKLTPLCIAMRCNKTETDRWGLTGKPTTTASTTTKTTSKPSVITAXVINEGDPCIKNNSCAGLEXXPMIGCKFNMTGLRKDKQREYNETWYSRDIVCEQNSNEXETASKCYMNHCNTSVIRESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFEPNCTKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRSNRTIISLNKYYNLTXRCRRPGNKTVLPVTIMSGLVFHSQPINEXPKQAWCWFGGNWKXXIREVKETLVKHPRYTGTNNTEKINXTAPAGGDPEVTFMWTNCRGEFLYCKMNWFXNWVDETXGFRWNXQNPKEKKRRNYVPCHIRQVXXTWHXVGKNVYLPPREGDLTCNSTVTSLIAEIDWIDKNETNITMSAEVAELYRLELGDYKLVXITPIGLAPTSVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTXNLQTRVTAIEKYLKDQXHLNSWGCAFRQVCHTTVPWPNDTLXPNWXNMTWQEWERQVDFLEAXITQLXEEAQIQQEKXMYELQKLNSWDIFGNWFDLTSWIXYIQYGVLIVLGVIGLRIVIYVXXMLARLRQGYRPVFSSPPVYVQQIPIQKGQEPPTKEGEEGDGGDRGGNRSWPWQIEXIHFLIRQLIRLLSWXFNSCRXWLLRSXQILQPVLQSLSRILQXVREVIRVEITYLQYGWRYFQEAAQXWWKFARETLASAWGDLWETLGRVGRRLLAIPRXIRQGLXLTLL*', 'Env', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8255-9046', '8255', 'MGGVTSKKQRKHGGNLRERLLQARGETYGRLWDGLEGDYSQSQDGSGRGLSSLSCEPQKYCEGQFMNTPWRNPRAEGAKLDYRQQNMDDVDDDDDDLVGFPVTPKVPLRTMTYKLAIDMSHFIKEKGGLEGIYYSDRRHKILNLYLEKEEGIIPDWQNYTAGPGIRYPMCFGWLWKLVPVDVSDEAQEDEAHCLMHPAQTSQWDDPWGEVLAWKFDPELAYNYKAFVKHPEEFGSSSGLSEEEVKRRLTARGLLKMADKKETS*', 'Nef', '14'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('9099-9890', '9099', 'MGGAISKKQHRRGGNLRERLLRARGETYGRLWEGLEEGYSQSLGASGKGLSSLSCEPQKYSEGQYMNTPWRNPTAEKAKLGYKQQNMDDVDDEDDDLVGVSVHPKVPLRAMTYKLAIDMSHFIKEKGGLEGIYYNEKRHRILDMYMEKEEGIIPDWQNYTLGPGTRYPMYFGWLWKLVPVDVSDEAQEDETHCLVHPAQTHQWDDPWGEVLAWKFDPELAYSYKAFIKYPEEFGSKSGLSEEEVKRRLTARGIYKMADKRETS*', 'Nef', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1631-4642', '1631', 'FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSPSEAGADRQGTVSFNFPQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*', 'Pol', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('309-1841', '309', 'MGARNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCRKILSVLAPLMPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGSRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKSYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5860-8499', '5860', 'MGCLGNQLLIAILLLSVYGIYGTLYVTVFYGVPAWRNATIPLFCATKNRDTWGTTQCLPDNGDYSEMALNVTESFDAWNNTVTEQAIEDVWQLFETSIKPCVKLSPLCITMRCNKSETDRWGLTKSITTTASTTSTTASAKVDMVNETSSCIAQDNCTGLEQEQMISCKFNMTGLKRDKKKEYNETWYSADLVCEQGNNTGNESRCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFMPNCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINDRPKQAWCWFGGKWKDAIKEVKQTIVKHPRYTGTNNTDKINLTAPGGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRNTANQTSKEQHKRNYVPCHIRQIINTWHKVGRNVYLPPREGDLTCNSTVTSLIANIDWIDGNQTNITMSAEVAELYRLELGDYKLVEITPIGLAPTNVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTVPWPNASLTPEWNNETWQEWERKVDFLEENITALLEEAQIQQERNMYELQKLNSWDVFGNWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHIQQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLVRQLIRLLTWLFSNCRTLLSRVYQVLQPILQRLSATLQRIREVLRTELTYLQYGWSYFHEAVQAVWRSATETLAGAWGDLWETLRRGGRWILAIPRRIRQGLELTLL*', 'Env', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8333-9124', '8333', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRLLGEVEDGYSQSPGGLDKGLSSLSCEGQKYNQGQYMNTPWRNPAEEREKLAYRKQNMDDIDEEDDDLVGVSVRSKVPLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1484-4666', '1484', 'VLELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEEQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQIPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQTNSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGIPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5784-5852;8064-8315', '5784', 'MSNHEREEELRKRLRLIHLLHQTPYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPGPSTDTPLDLAIQQLQNLAIESIPGPPTNTPEALCDPTEDSRSPQD*', 'Rev', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5558-5854;8064-8159', '5558', 'METPLREQENSLESSNERSSCISEADASTPESANLGEEILSQLYRPLEACYNTCYCKKCCYHCQFCFLKKGLGICYEQSRKRRRTPKKAKANTSSASNKPISNRTRHCQPEKAKKETVEKAVATAPGLGR*', 'Tat', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4596-5240', '4596', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWNLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGADFPGLAKVLGILA*', 'Vif', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5407-5712', '5407', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSML*', 'VpR', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5068-5406', '5068', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'Vpx', '15'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1799-2095', '1799', 'PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF', 'Protease', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2096-3775', '2096', 'PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL', 'Pol p66 RT', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('3416-3775', '3416', 'YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL', 'RNAse H', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('3776-4642', '3776', 'FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*', 'Integrase', '5'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-1701', '1', 'MKAILVVLLYTFATANADTLCIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETPSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPKTSSWPNHDSNKGVTAACPHAGAKSFYKNLIWLVKKGNSYPKLSKSYINDKGKEVLVLWGIHHPSTSADQQSLYQNADTYVFVGSSRYSKKFKPEIAIRPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISDTPVHDCNTTCQTPKGAINTSLPFQNIHPITIGKCPKYVKSTKLRLATGLRNIPSIQSRGLFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDEITNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDNTCMESVKNGTYDYPKYSEEAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI*', 'HA', '29'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('221-1744', '221', 'MGARXSVLSGKKADELEKIRLRPGGKKKYMLKHVVWAANELDXFGLAESLLENKEGCQXILSXLAPLVPTGSENLKSXYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTADKMPATSRPTAPPSGRGGNYPVQQVGGNYTHLPLSPRTLNAWVKLXEEKKFGAEVVPGFXALSEGCXPYDINQMLNCXGEXQSAMQIIREIINEEAADWDLQHPQPGPIPAGXLRDPRGSDIAGTTSTVEEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKXGXKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGXGGPGQKARLMAEALKEALTPGQLPFAAVQQRGQRKTIKXWNCGKEGHSARQCRAPRRQGCWKCGXTGHVMAKCPERQAGFLGLGPWGKKPRNFPMAQIPQGLTPTAPPEDPAVDLLKNYMRMGRRQRXNRERPYKXVTEDLLHLNSLFGEDQ*', 'Gag', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-2274', '1', 'MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNILSMAPIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRPLLIDGTASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQTRRSFELKKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPLNPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICSTIEELRRQK*', 'PB1', '35'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-2280', '1', 'MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPALRMKWMMAMRYPITADKRIMDMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWNRNGPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHADLSAKEAQDVIMEVVFPNEVGARILTSESQLAITKEKKEELQDCKIAPLMVAYMLERELVRKTRFLPVAGGTGSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADPLASLLEMCHSTQIGGVRMVDILRQNPTEEQAVDICKAAIGLRISSSFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIESIDNVMGMIGILPDMTPSTEMSLRGIRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKMEFEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSSLTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMAIN*', 'PB2', '36'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-2151', '1', 'MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSERGEETIEEKFEITGTMRKLADQSLPPNFPSLENFRAYVDGFEPNGCIEGKLSQMSKEVNAKIEPFLRTTPRPLRLPDGPLCHQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPNIVKPHEKGINPNYLMAWKQVLAELQDIENEEKIPRTKNMKRTSQLKWALGENMAPEKVDFDDCKDVGDLKQYDSDEPEPRSLASWVQNEFNKACELTDSSWIELDEIGEDVAPIEHIASMRRNYFTAEVSHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNLYGFIIKGRSHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVSRPMFLYVRTNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFENKSETWPIGESPRGVEEGSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRDNLEPGTFDLGGLYEAIEECLINDPWVLLNASWFNSFLTHALK*', 'PA', '34'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-1410', '1', 'MNPNQKIITIGSVCMTIGMANLILQIGNIISIWISHSIQLGNQNQIETCNQSVITYENNTWVNQTYVNISNTNFAAGQSVVSVKLAGNSSLCPVSGWAIYSKDNSVRIGSKGDVFVIREPFISCSPLECRTFFLTQGALLNDKHSNGTIKDRSPYRTLMSCPIGEVPSPYNSRFESVAWSASACHDGINWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNILRTQESECACVNGSCFTVMTDGPSNGQASYKIFRIEKGKIVKSVEMNAPNYHYEECSCYPDSSEITCVCRDNWHGSNRPWVSFNQNLEYQIGYICSGIFGDNPRPNDKTGSCGPVSSNGANGVKGFSFKYGNGVWIGRTKSISSRNGFEMIWDPNGWTGTDNNFSIKQDIVGINEWSGYSGSFVQHPELTGLDCIRPCFWVELIRGRPKENTIWTSGSSISFCGVNSDTVGWSWPDGAELPFTIDK*', 'NA', '31'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-1497', '1', 'MASQGTKRSYEQMETGGERQDATEIRASVGRMIGGIGRFYIQMCTELKLSDYDGRLIQNSITIERMVLSAFDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWMRELILYDKEEIRRVWRQANNGEDATAGLTHIMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGAAGAAVKGVGTIAMELIRMIKRGINDRNFWRGENGRRTRVAYERMCNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRGSVAHKSCLPACVYGLAVASGHDFEREGYSLVGIDPFKLLQNSQVVSLMRPNENPAHKSQLVWMACHSAAFEDLRVSSFIRGKKVIPRGKLSTRGVQIASNENVETMDSNTLELRSRYWAIRTRSGGNTNQQKASAGQISVQPTFSVQRNLPFERATVMAAFSGNNEGRTSDMRTEVIRMMESAKPEDLSFQGRGVFELSDEKATNPIVPSFDMSNEGSYFFGDNAEEYDS*', 'NP', '32'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6602-9265', '6602', 'MGCLGNQLLIALLLVSVLEICCVQYVTVFYGVPAWKNATIPLFCATRNRDTWGTTQCLPDNDDYSELAVNITEAFDAWNNTVTEQAIEDVWNLFETSIKPCVKLTPLCIAMRCNKTETDRWGLTGRAETTTTAKSTTSTTTTTVTPKVINEGDSCIKNNSCAGLEQEPMIGCKFNMTGLKRDKKIEYNETWYSRDLICEQPANGSESKCYMQHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPKCSKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGNSNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFHSQPINERPKQAWCRFGGNWSEAIQEVKETLVKHPRYTGTNDTRKINLTAPAGGDPEVTFMWTNCRGEFLYCKMNWFLNWVEDRDQNSNRWKQQKKPEQQKRNYVPCHIRQIINTWHKVGKNVYLPPREGDLTCNSTVTSLIAEIDWINNNETNITMSAEVAELYRLELGDYKLVEITPIGLAPTDVRRYTTTGASRNKRGVFVLGFLGFLATAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQHELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNSWGCAFRQVCHTTVPWPNDSLVPNWDNMTWQEWEGKVDFLEANITQLLEEAQIQQEKNMYELQKLNSWDIFGNWFDLTSWIRYIQYGVLIVLGVVGLRIVIYVVQMLARLRQGYRPVFSPPPAYVQQIPIHKDQEPPTKEGEEGEGGDRGGSRSWPWQIEYIHFLIRQLIRLLTWLFSSCRDWLLRIYQILQPVLQRLSRTLQRVREVIRIEITYLQYGWSYFQEAAQAWWKFARETLASAWRDIWETLGRVGRGILAIPRRVRQGLELALL*', 'Env', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6155-6460', '6155', 'MAERPPEDEAPQREPWDEWVVEVLEEIKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIRILQRALFIHFRSGCAHSRIGQSRGGNPLSTIPPSRAML*', 'Vpr', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6297-6595;8825-8924', '6297', 'MIDMETPLKEQENSLESYREHSSSISEVDVPTPESANLEEEILSQLYRPLEPCYNKCYCKRCCYHCQHCFLKKGLGICYEQHRRRTPKKTKTNPLPASNNRSLSTRTRNRQPKKEKKEKVETEVAADLGLGR*', 'Tat', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6532-6595;8825-9066', '6532', 'MSSTEEELRKRLRLIHFLHQTTDPYPQGPGTANQRRRRRRRWRQRWQQILALADRIYSFPNPPTDTPLDLAIQQLQGLAIEDLPDPPTSAPETLKDAAKSS*', 'Rev', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5815-6153', '5815', 'MSDPRERIPPGNSGEETIEEAFEWLNRTVEGINRAAVNHLPRELIFQVWQRSWEYWHDEMGMSESYTKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRTGPPPPPPPGLA*', 'Vpx', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5343-5987', '5343', 'MEEEKNWIVVPTWRIPERLERWHSLIKHLKYNTKDLQMACYVPHHKVGWAWWTCSRVIFPLRDKTHLEVQGYWNLTPEKGWLSTHAVRITWYSRNFWTDVTPDCADTLLHSTYFPCFSEGEVQRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQREDPTWKQWRGNNRRGLRMAKQNSRRNKQGSSKSPAEGANFPGLAKVLGILA*', 'Vif', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('2354-5413', '2354', 'KTGGFFRVWPMGKEAPQFPHGPDASGADTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQGGDRGFAAPQFSLWRRPVVTAYIEEQPVEVLLDTGADDSIVTGIELGPNYTPKIVGGIGGFINTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNFPIAKVEPIKVTLKPGKEGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRKANPDVTLIQYMDDILIASDRTDLEHDRVVLQLKELLNGIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPIEATVIKSQDNQWSYKIHQEDKVLKVGKFAKVKNTHTNGVRLLAHVVQKIGKEALVIWGEVPKFHLPVEREIWEQWWTDYWQVTWIPDWDFVSTPPLVRLVFNLVKEPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALADSGPKANIIVDSQYVMGIVAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGIPRLVAKQIVDTCDRCHQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWRGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGEAREVA*', 'Pol', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1065-2588', '1065', 'MGARNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLDNKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTADKMPATSRPTAPPSGRGGNYPVQQVGGNYVHLPLSPRTLNAWVKLVEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGEHQAAMQIIREIINEEAADWDLQHPQPGPLPAGQLREPRGSDIAGTTSTVEEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGIGGPGQKARLMAEALKEALRPDQLPFAAVQQKGQRRTIKCWNCGKEGHSARQCRAPRRQGCWGCGKTGHVMAKCPERQAGFLGFGPWGKKPRNFPMAQMPQGLTPTAPPEDPAVDLLKNYMKMGRKQRENRERPYKEVTEDLLHLNSLFGEDQ*', 'Gag', '16'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5462-5751;7984-8083', '5462', 'METPLKEQESSLESSREHSSSISEVDATTPESATLEEEILSQLYRPLEACYNKCYCKKCCYHCQHCFLKKGLGXCYEQQRRRTPKKTKANTFSASNNRSLSRRARNRQPKKEKKKTVEAEVATDLGLGR*', 'Tat', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4971-5309', '4971', 'MSDPRERIPPGNSGEETVGEAFDWLERTVEEINRAAVNHLPRELIFQVWRRSWEYWHDEIGMSASYTKYRYLCLIQKALFMHCKKGCRCLGGEHGAGGWRSGPPPPPPPGLA*', 'Vpx', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5311-5616', '5311', 'MTERPPEDEAPQREPWDEWVVEVLEEVKEEALKHFDPRLLTALGNYIYDRHGDTLEGAGELIRILQRALFIHFRGGCNHSRIGHSGGGNPLSTIPPSRGVL*', 'Vpr', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4499-5143', '4499', 'MEEEKSWIAVXTWRIPGRLEKWHSLIKHLKYNTKDLQKACYVPHHKVGWAWWTCSRVIFPLRDESHLEVQGYWSLTPEXXWLSTYAXXITWYSRNFWTDVTPDXADTLLHGTYFPCFSEGEVRRAIRGEKLLSCCKFPKAHKNQVPSLQYLALTVVSHVRSQGEDPTWKQWRGNSRRGLRLARKNSRRNKQGSSESFAEGVNFPGLAKVLGILA*', 'Vif', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8258-9043', '8258', 'MGGVTSKKQRKHGGNLRERLLQARGETYGRLWDGLEGEYSQSQDVSGKGLSSLSCEP:::::::::::::RNPTAERAKLDYRQQNMDDVDDDX:XXFPVTPRVPLRTMTYKLAIDMSHFIKEKGGLEGIYYSDRRHRILNLYLEKEEGIIPDWQNYTAGPGIRYPMCFGWLWKLVPVDVSDEAQEDEAHCLMHPAQTSQWDDPWGEVLAWKFDPELAYNYMAFVKHPEEFGSRSGLSEEEVKRRLTARGLLKMADKKETS*', 'Nef', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1501-4569', '1501', 'MPRETGGFFRAWPMGKEAPQFPHGPDTSGVDTNCSPRGSSCGSTEELHEDGQKAEGXQRETLQGXDGGFAAPQFSLWRRPVVTAYIEEQPVEVLLDTGADDSXVAGIELGPNYTPKIVGXIGGFINTKEYKDVKIKVLGXVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLKPGKDGPKLRQWPLSKEKIIALXEICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQXGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVXPQGWKGSPAIFQHXMRNVLEPFRKANPDVXLIQYMDXILIASXRTDLEHDRVVLQLKELLNSMGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQXLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEEXKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAXVVQKIGKEAIVIWGQVPKFHLPVEREIWEQWWTDYWQVTWIPEWDFVSTPPLVRXVFNLVKEPIQGAETFYVDGSCNRQSKEGKAGYVTDRXRDRTKXLEQTTNQQAXLEAFYLALADSGPXANIIXDSQYVMGIIAGQPXESESRLVNQIIEEMIKKEAIYVXWVPAHKGIGGNQEVDHLXSQGIRQVLFLEKIEPAQEEHEKYHSNVKXLVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWAXIEQTFGVPYNPQSXGVVEAMNHHLKTQIDRIREQANSIETIVLMAXHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSXLEDTGEAREVA*', 'Pol', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5758-8424', '5758', 'MGCLGNQLLIALLLLSALGISCVQYVTVFYGIPAWKNATVPLFCATENRDTWGTTQCLPDNNDYSELAINVTEAFDAWDNTVTEQAIEDVWNLFETSIKPCVKLTPLCIAMRCNKTETDRWGLTGKPVTTTTSTTTKSTSKPPALTAKVINENDPCIXTDNCAGLEQEPMISCKFNMTGLXRDKKKEYNETWYSRDIVCEQNNNGNENESKCYMNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFEPNCTKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYWHGRSNRTIISLNKYYNLTMSCRRPGKKIVLPVTITSGLIFHSQTINKRPKQAWCWFXGXWKGXIREVKETLVKHPRYTGTNDTXXINLTAPXGGDXEVTFMWTNCRGEFLYCKMNWFLNWVDETNGFRW::QXXKEKKRRNYVPCHIRQVIXTWHXVGKNVYLPPREGXXTCNSTVTSLIAEIDWIDKNETNITMSAEVAELYRLELGDYKLVEITPIGLAPTSXRRYTTTGASRNKRGVFVLGFLGFLXTAGSAMGAASLTLSAQSRTLLAGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAHLNSWGCAFRQVCHTTVPWPNDTLMPNWDNMTWQEWERQVDFLEANITQLLEEAQIQQEENMYELQKLNSWDIFGNWFDLTSWIKYIQYGVLIVLGVIGLRIVIYVVQMLARLRQGYRPVFSSPPVYVQQIPIQKGQEPPTKEGEEEDGGGRGGNRSWPWQIEYIHFLIRQLIRLLTWLFNSCRDWLLRSCQILQPVLQSLSRTLQRVREVIRVEIAYLQYGWRYFQEAAQAWWKFARETLASAWRDLWETLGRVGRGILAIPRRIRQGLELTLL*', 'Env', '17'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('536-2068', '536', 'MGVRNSVLSGKKADELEKIRLRPNGKKKYMLKHVVWAANELDRFGLAESLLENKEGCQKILSVLAPLVPTGSENLKSLYNTVCVIWCIHAEEKVKHTEEAKQIVQRHLVVETGTTETMPKTSRPTAPSSGRGGNYPVQQIGGNYVHLPLSPRTLNAWVKLIEEKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIRDIINEEAADWDLQHPQPAPQQGQLREPSGSDIAGTTSSVDEQIQWMYRQQNPIPVGNIYRRWIQLGLQKCVRMYNPTNILDVKQGPKEPFQSYVDRFYKSLRAEQTDAAVKNWMTQTLLIQNANPDCKLVLKGLGVNPTLEEMLTACQGVGGPGQKARLMAEALKEALAPVPIPFAAAQQRGPRKPIKCWNCGKEGHSARQCRAPRRQGCWKCGKMDHVMAKCPDRQAGFLGLGPWGKKPRNFPMAQVHQGLMPTAPPEDPAVDLLKNYMQLGKQQREKQRESREKPYKEVTEDLLHLNSLFGGDQ*', 'Gag', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1714-4893', '1714', 'LELWERGTLCKAMQSPKKTGMLEMWKNGPCYGQMPRQTGGFFRPWSMGKEAPQFPHGSSASGADANCSPRGPSCGSAKELHAVGQAAERKAERKQREALQGGDRGFAAPQFSLWRRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYKNVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNFPIAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLAKRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRVVLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQWWTDYWQVTWIPEWDFISTPPLVRLVFNLVKDPIEGEETYYTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTDSGPKANIIVDSQYVMGIITGCPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQVLFLEKIEPAQEEHDKYHSNVKELVFKFGLPRIVARQIVDTCDKCHQKGEAIHGQANSDLGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLHTDNGANFASQEVKMVAWWAGIEHTFGVPYNPQSQGVVEAMNHHLKNQIDRIREQANSVETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFQQSKNSKFKNFRVYYREGRDQLWKGPGELLWKGEGAVILKVGTDIKVVPRRKAKIIKDYGGGKEVDSSSHMEDTGEAREVA*', 'Pol', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('4823-5467', '4823', 'MEEEKRWIAVPTWRIPERLERWHSLIKYLKYKTKDLQKVCYVPHFKVGWAWWTCSRVIFPLQEGSHLEVQGYWHLTPEKGWLSTYAVRITWYSKNFWTDVTPNYADILLHSTYFPCFTAGEVRRAIRGEQLLSCCRFPRAHKYQVPSLQYLALKVVSDVRSQGENPTWKQWRRDNRRGLRMAKQNSRGDKQRGGKPPTKGANFPGLAKVLGILA*', 'Vif', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5295-5633', '5295', 'MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA*', 'vpX', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5634-5945', '5634', 'MEERPPENEGPQREPWDEWVVEVLEELKEEALKHFDPRLLTALGNHIYNRHGDTLEGAGELIRILQRALFMHFRGGCIHSRIGQPGGGNPLSAIPPSRSMRML*', 'vpR', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('5954-6168;8463-8508', '5954', 'MEPVDPRLEPWKHPGSRPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSHFRGEPTGPKE*', 'Tat', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6093-6168;8463-8737', '6093', 'MAGRSGDSDEELIRTVRLIKLLYQSNPPPTSEGSRQARRNRRRRWRERQRQIHSISDRILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTPGTQRVGSPQILVESPTVLESGTKE*', 'Rev', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6185-6430', '6185', 'MQSIQIEIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLINRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*', 'vpu', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6345-8948', '6345', 'MRVKEKYQHLWRWGWRWGIMLLGMLMICSATEKLWVTVYYGVPVWKEAKTTLFCASNAKAYEKEVHNIWATHACVPTDPNPQEIVLGNVTENFNMWKNDMVDQMHEDIISLWDQSLKPCVKLTSLCVTLKCSNFTGKSNVTYKGDMEVKNCSFNVTTEIRDKKQKVYALFYRLDITPLDDNSSEYILINCNSSTITQACPKVNFDPIPIHYCAPAGYAILKCNNKTFNGTGPCHNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENLTDNVKTIIVHFNESVEITCTRPNNNTRKSISIGPGQAIYATGDIIGDIRQAHCNISKENWNKTLQWVRGKLKEHFPNKTIVFKPSSGGDLEITTHSFNCRGEFFYCNTSKLFNSTDNSTHMGTENNTIITIPCRIKQIINMWQEVGRAMYAPPIEGNITCKSNITGLLLVRDGGWDNSTNDTETFRPGGGDMRDNWRSELYKYKVVEVKPLGIAPTKAKRRVVEREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQDNLLRAIEAQQHMLQLTVWGIKQLQARVLAIERYLQDQQLLGIWGCSGKLICTTAVPWNDSWSNKSQTDIWENMTWMQWDREISRHTDTIYRLLEDSQNQQEKNEKDLLALDSWKNLWNWFSITRWLWYIKIFIMIVGGLIGLRIIFAVLSIVNRVRQGYSPLSFQTHLPLPRGADRPEGIEEEGGERDRDRSIRLVTGSLALIWDDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWEALKYWWNLLLYWSQELKNSAVSLLNATAIAVRQYGWSYFHEAVQAVWRSATETLAGAWGDLWEILRRGGRWILAIPRRIRQGLELTLL*', 'Env', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('8782-9573', '8782', 'MGGAISMRRSRPSGDLRQRLLRARGETYGRFLGEVEDGYSQSPGGLDKGSSSLSCEGQKYNQGQHMNTPWRNPAEEGEKLAYRKQNMDDIDEEDDDLVGVSVRPKVLLRTMSYKLAIDMSHFIKEKGGLEGIYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVDVSDEAQEDEEHYLMHPAQTSQWDDPWGEVLAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRLTARGLLNMADKKETR*', 'Nef', '37'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6912-7121', '6912', 'MGSIVLYMSQSFMVYQLGGMRQFPSFVQPRIGILGEQLSAYQIMVIIQKWPLMLQKALMPGIIQSQNRQ*', 'Env ARF 1', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('6784-7005', '6784', 'MSNHEREEELRKRLRLIHLLHQTSKYGMSWESAAYRHLAFKCLWDLLYSICHSLLWCTSLEECDNSPLLCNQE*', 'Env ARF 10', '1'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-660', '1', 'MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEESSETLRMTIASVPTSRYLSDMTLEEMSRDWFMLMPRQKIIGPLCVRLDQAIMEKNIVLKANFSVIFNRLETLILLRAFTEEGAIVGEISPLPSLPGHTYEDVKNAVGVLIGGLEWNGNTVRVSENIQRFAWRNCDENGRPSLPPEQK*', 'NS1', '33'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-366', '1', 'MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVMRMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFMQALQLLLEVEQEIRAFSFQLI*', 'NS2', '33'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-759', '1', 'MSLLTEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHRQMATTTNPLIRHENRMVLASTTAKAMEQMAGSSEQAAEAMEVANQTRQMVHAMRTIGTHPSSSAGLKDDLLENLQAYQKRMGVQMQRFK*', 'M1', '30'); -INSERT into sequenceAnalysis.ref_aa_sequences -(exons, start_location, sequence, name, ref_nt_id) VALUES -('1-294', '1', 'MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKCIYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE*', 'M2', '30') -; - - --- ---------------------------- --- Table structure for sequenceanalysis.drug_resistance --- ---------------------------- -EXEC core.fn_dropifexists 'drug_resistance', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.drug_resistance ( - RowId INT IDENTITY(1,1) NOT NULL, - --virus_strain varchar(45) NOT NULL, - ref_nt_id integer not null, - class varchar(45) DEFAULT NULL, - --protein varchar(45) NOT NULL, - ref_aa_id integer not null, - aa_position integer NOT NULL, - aa_insert_index integer not null, - reference_aa varchar(2) NOT NULL, - mutant_aa varchar(2) NOT NULL, - drug varchar(45) NOT NULL, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_drug_resistance PRIMARY KEY (rowId) - ---NOTE: depreciated --- CONSTRAINT fk_drug_resistance_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_drug_resistance_ref_aa_id FOREIGN KEY (ref_aa_id) --- REFERENCES sequenceanalysis.ref_aa_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION - - -) -; - --- ---------------------------- --- Records of virus_resistance --- ---------------------------- -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '23', '0', 'L', 'I', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '24', '0', 'L', 'I', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '30', '0', 'D', 'N', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '32', '0', 'V', 'I', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '33', '0', 'L', 'F', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'I', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '46', '0', 'M', 'L', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'V', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'A', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'A', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '47', '0', 'I', 'A', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'V', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'V', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'V', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'M', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'M', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'M', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '48', '0', 'G', 'M', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '50', '0', 'I', 'L', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '50', '0', 'I', 'V', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '50', '0', 'I', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '50', '0', 'I', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '53', '0', 'F', 'L', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '53', '0', 'F', 'L', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '53', '0', 'F', 'L', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '53', '0', 'F', 'L', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'V', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'T', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'A', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'L', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '54', '0', 'I', 'M', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'S', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '73', '0', 'G', 'T', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '76', '0', 'L', 'V', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '76', '0', 'L', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '76', '0', 'L', 'V', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '76', '0', 'L', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'A', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'T', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'F', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'S', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '82', '0', 'V', 'L', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'V', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'A', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '84', '0', 'I', 'C', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'D', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'D', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'S', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'S', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'S', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '88', '0', 'N', 'S', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'ATV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'DRV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'FPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'IDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'LPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'NFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'SQV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '104', 'Protease', '90', '0', 'L', 'M', 'TPV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'V', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'V', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'V', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'V', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'I', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'I', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'I', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '184', '0', 'M', 'I', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '41', '0', 'M', 'L', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '67', '0', 'D', 'N', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'R', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'R', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '210', '0', 'L', 'W', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'F', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '215', '0', 'T', 'Y', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '219', '0', 'K', 'Q', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '219', '0', 'K', 'Q', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '219', '0', 'K', 'E', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '219', '0', 'K', 'E', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'R', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '65', '0', 'K', 'N', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'E', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '70', '0', 'K', 'G', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '74', '0', 'L', 'V', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '74', '0', 'L', 'V', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '74', '0', 'L', 'I', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '74', '0', 'L', 'I', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'T', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'T', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'T', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'M', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'M', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'M', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'M', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '115', '0', 'Y', 'F', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '115', '0', 'Y', 'F', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '69', '1', '-', 'X', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '151', '0', 'Q', 'M', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', '3TC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'FTC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'TDF'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '62', '0', 'A', 'V', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'I', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'I', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'I', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '75', '0', 'V', 'I', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '77', '0', 'F', 'L', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '77', '0', 'F', 'L', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '77', '0', 'F', 'L', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '77', '0', 'F', 'L', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '116', '0', 'F', 'Y', 'ABC'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '116', '0', 'F', 'Y', 'DDI'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '116', '0', 'F', 'Y', 'D4T'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NRTI', '116', '0', 'F', 'Y', 'ZDV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '98', '0', 'A', 'G', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '98', '0', 'A', 'G', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '98', '0', 'A', 'G', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '98', '0', 'A', 'G', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '100', '0', 'L', 'I', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '100', '0', 'L', 'I', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '100', '0', 'L', 'I', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '100', '0', 'L', 'I', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'E', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'E', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'E', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'E', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'P', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'P', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'P', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '101', '0', 'K', 'P', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'N', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'N', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'N', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'S', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'S', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '103', '0', 'K', 'S', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'A', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'A', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'A', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'M', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'M', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '106', '0', 'V', 'M', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '108', '0', 'V', 'I', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '108', '0', 'V', 'I', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '108', '0', 'V', 'I', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'D', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'D', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'D', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'D', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'E', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'E', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'E', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'E', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'F', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'F', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'F', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '179', '0', 'V', 'F', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'C', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'C', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'C', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'C', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'I', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'I', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'I', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'I', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'V', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'V', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'V', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '181', '0', 'Y', 'V', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'L', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'L', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'L', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'L', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'H', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'H', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'H', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'H', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'C', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'C', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'C', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '188', '0', 'Y', 'C', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'A', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'A', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'A', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'S', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'S', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'S', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'E', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'E', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'E', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '190', '0', 'G', 'E', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '225', '0', 'P', 'H', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'L', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'C', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'C', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'C', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '227', '0', 'F', 'C', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '230', '0', 'M', 'L', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '230', '0', 'M', 'L', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '230', '0', 'M', 'L', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '230', '0', 'M', 'L', 'ETR'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '236', '0', 'P', 'L', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '238', '0', 'K', 'T', 'NVP'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '238', '0', 'K', 'T', 'DLV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '238', '0', 'K', 'T', 'EFV'); -INSERT INTO sequenceanalysis.drug_resistance (ref_nt_id, ref_aa_id, class, aa_position, aa_insert_index, reference_aa, mutant_aa, drug) VALUES ('5', '105', 'NNRTI', '238', '0', 'K', 'T', 'ETR') -; - - --- ---------------------------- --- Table structure for sequenceanalysis.virus_strains --- ---------------------------- -EXEC core.fn_dropifexists 'virus_strains', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.virus_strains ( - virus_strain varchar(45) NOT NULL, - genbank varchar(45) DEFAULT NULL, - species varchar(45) NOT NULL, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_virus_strains PRIMARY KEY (virus_strain) -) -; -go --- ---------------------------- --- Records of sequenceAnalysis.virus_strains --- ---------------------------- -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac239', 'M33262', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac251', 'M19499', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SHIV89.6P', 'U89134', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('E660', null, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('HXB2', 'NC_001802', 'HIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac251_CMstock', null, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('A_Kawasaki_173_2001', null, 'Influenza A'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('A_California_04_09', null, 'Influenza A'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('A_Kawasaki_UTK-04_09', null, 'Influenza A'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVsmE041-1', null, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac239deltaNef', null, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVmac239cy0163', null, 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVsmE543', 'U72748.2', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SIVsmE041-2', '', 'SIV'); -INSERT INTO sequenceanalysis.virus_strains (virus_strain, genbank, species) VALUES ('SHIV-1157ipd3N4', 'DQ779174', 'SIV'); - -go --- ---------------------------- --- Table structure for sequenceanalysis.chemistries --- ---------------------------- -EXEC core.fn_dropifexists 'chemistries', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.chemistries ( - chemistry varchar(45) NOT NULL, - - CONSTRAINT PK_chemistries PRIMARY KEY (chemistry) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.chemistries --- ---------------------------- -INSERT INTO sequenceanalysis.chemistries VALUES ('Pyrosequencing'); -INSERT INTO sequenceanalysis.chemistries VALUES ('Sanger'); - - --- ---------------------------- --- Table structure for sequenceanalysis.dna_mol_type --- ---------------------------- -EXEC core.fn_dropifexists 'dna_mol_type', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.dna_mol_type ( - mol_type varchar(45) NOT NULL, - - CONSTRAINT PK_dna_mol_type PRIMARY KEY (mol_type) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.dna_mol_type --- ---------------------------- -INSERT INTO sequenceanalysis.dna_mol_type VALUES ('mRNA'); -INSERT INTO sequenceanalysis.dna_mol_type VALUES ('gDNA'); -INSERT INTO sequenceanalysis.dna_mol_type VALUES ('Plasmid'); -INSERT INTO sequenceanalysis.dna_mol_type VALUES ('RNA'); - - --- ---------------------------- --- Table structure for sequenceanalysis.dna_adapters --- ---------------------------- -EXEC core.fn_dropifexists 'dna_adapters', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.dna_adapters ( - Name varchar(255) not null, - Group_name varchar(255), - Sequence text not null, - - CONSTRAINT PK_dna_adapters PRIMARY KEY (name) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.dna_adapters --- ---------------------------- -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 FLX Amplicon A', 'Roche-454 FLX Amplicon', 'GCCTCCCTCGCGCCATCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 FLX Amplicon B', 'Roche-454 FLX Amplicon', 'GCCTTGCCAGCCCGCTCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 Titanium Amplicon A', 'Roche-454 Titanium Amplicon', 'CGTATCGCCTCCCTCGCGCCATCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 Titanium Amplicon B', 'Roche-454 Titanium Amplicon', 'CTATGCGCCTTGCCAGCCCGCTCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 Titanium Library A', 'Roche-454 Titanium Library', 'CCATCTCATCCCTGCGTGTCTCCGACTCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Roche-454 Titanium Library B', 'Roche-454 Titanium Library', 'CCTATCCCCTGTGTGCCTTGGCAGTCTCAG'); -INSERT INTO sequenceanalysis.dna_adapters (name, group_name, sequence) VALUES ('Nextera Transposon Adapter A', 'Nextera Adapters', 'AGATGTGTATAAGAGACAG'); - - - --- ---------------------------- --- Table structure for sequenceanalysis.dna_loci --- ---------------------------- -EXEC core.fn_dropifexists 'dna_loci', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.dna_loci ( - locus varchar(45) NOT NULL, - regexp varchar(45), - - CONSTRAINT PK_dna_loci PRIMARY KEY (locus) -) -; - --- ---------------------------- --- Records of sequenceanalysis.dna_loci --- ---------------------------- -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-A', '-a'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-B', '-b'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-E', '-e'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-F', '-f'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-G', '-g'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-I', '-i'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('MHC-AG', '-ag'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DPA', 'dpa'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DPB', 'dpb'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DQA', 'dqa'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DQB', 'dqb'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DRA', 'dra'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('DRB', 'drb'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('KIR1D', '1D'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('KIR2DL', '2DL4'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('KIR3DL', '2DL5'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('KIR3DS', '3DM'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('HLA-A', 'hla-a'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('HLA-B', 'hla-b'); -INSERT INTO sequenceanalysis.dna_loci VALUES ('HLA-C', 'hla-c'); - - - - --- ---------------------------- --- Table structure for sequenceanalysis.ref_nt_category --- ---------------------------- -EXEC core.fn_dropifexists 'ref_nt_category', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.ref_nt_category ( - category varchar(45) NOT NULL, - - CONSTRAINT PK_ref_nt_category PRIMARY KEY (category) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.ref_nt_category --- ---------------------------- -INSERT into sequenceAnalysis.ref_nt_category (category) VALUES ('Virus'); -INSERT into sequenceAnalysis.ref_nt_category (category) VALUES ('DNA'); - --- ---------------------------- --- Table structure for sequenceanalysis.dna_region --- ---------------------------- -EXEC core.fn_dropifexists 'dna_region', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.dna_region ( - region varchar(45) NOT NULL, - - CONSTRAINT PK_dna_region PRIMARY KEY (region) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.dna_region --- ---------------------------- -INSERT into sequenceAnalysis.dna_region (region) VALUES ('KIR'); -INSERT into sequenceAnalysis.dna_region (region) VALUES ('MHC'); - --- ---------------------------- --- Table structure for sequenceanalysis.geographic_origins --- ---------------------------- -EXEC core.fn_dropifexists 'geographic_origins', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.geographic_origins ( - geographic_origin varchar(45) NOT NULL, - - CONSTRAINT PK_geographic_origins PRIMARY KEY (geographic_origin) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.geographic_origins --- ---------------------------- -INSERT into sequenceAnalysis.geographic_origins (geographic_origin) VALUES ('India'); -INSERT into sequenceAnalysis.geographic_origins (geographic_origin) VALUES ('Mauritius'); - - - --- ---------------------------- --- Table structure for sequenceAnalysis.species --- ---------------------------- -EXEC core.fn_dropifexists 'species', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.species ( -common_name varchar(255) not null, -scientific_name varchar(255) DEFAULT NULL, -id_prefix varchar(255) DEFAULT NULL, -mhc_prefix varchar(255) DEFAULT NULL, - -CONSTRAINT PK_species PRIMARY KEY (common_name) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.species --- ---------------------------- -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Baboon', '', '', ''); -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Cotton-top Tamarin', 'Saguinus oedipus', 'so', 'Saoe'); -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Cynomolgus', 'Macaca fascicularis', 'cy', 'Mafa'); -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Marmoset', 'Callithrix jacchus', 'cj', 'Caja'); -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Pigtail', 'Macaca Nemestrina', '', 'Mane'); -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Rhesus', 'Macaca mulatta', 'r|rh', 'Mamu'); -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Sooty Mangabey', 'Cercocebus atys', '', 'Ceat'); -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Stump Tailed', 'Macaca Arctoides', '', 'Maar'); -INSERT INTO sequenceAnalysis.species (common_name, scientific_name, id_prefix, mhc_prefix) VALUES ('Vervet', 'Chlorocebus sabaeus', 'ag', 'Chsa'); - - --- ---------------------------- --- Table structure for sequenceAnalysis.sbt_status --- ---------------------------- -EXEC core.fn_dropifexists 'sbt_status', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.sbt_status ( -status varchar(45) NOT NULL, - -CONSTRAINT PK_sbt_status PRIMARY KEY (status) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.sbt_status --- ---------------------------- -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Perfect'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Ambiguous'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Unknown'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Artifact'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Reanalysis Needed'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Unanalyzed'); -INSERT INTO sequenceanalysis.sbt_status (status) VALUES ('Primer Mismatch'); - - - --- ---------------------------- --- Table structure for sequenceanalysis.ref_nt_features --- ---------------------------- -EXEC core.fn_dropifexists 'ref_nt_features', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.ref_nt_features ( - RowId INT IDENTITY(1,1) NOT NULL, - ref_nt_id integer not null, - name varchar(45) NOT NULL, - category varchar(200), - nt_start integer NOT NULL, - nt_stop integer NOT NULL, - nt_sequence text, - comment text, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_ref_nt_features PRIMARY KEY (rowId) - ---NOTE: depreciated --- CONSTRAINT fk_ref_nt_features_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION -) -; - --- ---------------------------- --- Records of ref_nt_features --- ---------------------------- - - - --- ---------------------------- --- Table structure for sequenceanalysis.ref_aa_features --- ---------------------------- -EXEC core.fn_dropifexists 'ref_aa_features', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.ref_aa_features ( - RowId INT IDENTITY(1,1) NOT NULL, - ref_nt_id integer not null, - ref_aa_id integer not null, - name varchar(45) NOT NULL, - category varchar(200), - aa_start integer NOT NULL, - aa_stop integer NOT NULL, - aa_sequence text, - comment text, - - --Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_ref_aa_features PRIMARY KEY (rowId) - ---NOTE: depreciated --- CONSTRAINT fk_ref_aa_features_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_ref_aa_features_ref_aa_id FOREIGN KEY (ref_aa_id) --- REFERENCES sequenceanalysis.ref_aa_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION -) -; - --- ---------------------------- --- Records of ref_aa_features --- ---------------------------- -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '1', '132', 'p17 Matrix'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '133', '364', 'p24 Capsid'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '365', '377', 'p2'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '378', '432', 'p7 Nucleocapsid'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '433', '448', 'p1'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '38', '449', '501', 'p6'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '1', '56', 'Gag-Pol Fusion TF protein'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '57', '155', 'Protease'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '156', '715', 'p66 RT'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '596', '715', 'RNAse H'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '94', '716', '1003', 'Integrase'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '42', '31', '511', 'gp120'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('5', '42', '512', '857', 'gp41'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '1', '38', 'Signal'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '39', '136', 'C1'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '137', '204', 'V1'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '210', '258', 'V2'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '259', '365', 'C2'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '366', '400', 'V3'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '401', '472', 'C3'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '473', '504', 'V4'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '504', '547', 'C4'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '548', '570', 'V5'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '571', '614', 'C5'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '25', '614', 'gp120'); -INSERT INTO sequenceanalysis.ref_aa_features (ref_nt_id,ref_aa_id,aa_start,aa_stop,name) VALUES ('1', '8', '615', '958', 'gp41'); - - - --- ---------------------------- --- Table structure for sequenceAnalysis.sequence_reads --- ---------------------------- -EXEC core.fn_dropifexists 'sequence_reads', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.sequence_reads ( -RowId INT IDENTITY(1,1) NOT NULL, -analysis_id integer NOT NULL, -name varchar(220), -sequence text NOT NULL, -quality text, -translation text, -num_reads integer default 1 NOT NULL, -chemistry varchar(45), -comments text default null, - -Container ENTITYID NOT NULL, -CreatedBy USERID, -Created datetime, -ModifiedBy USERID, -Modified datetime, - -CONSTRAINT PK_sequence_reads PRIMARY KEY (rowId) - -); - --- ---------------------------- --- Table structure for sequenceAnalysis.sequence_alignments --- ---------------------------- -EXEC core.fn_dropifexists 'sequence_alignments', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.sequence_alignments ( -RowId INT IDENTITY(1,1) NOT NULL, -analysis_id integer NOT NULL, -read_id integer NOT NULL, -ref_nt_id integer, -ref_nt_origName varchar (4000), -readname varchar(220), -orientation integer, -q_start integer, -q_stop integer, -ref_start integer, -ref_stop integer, -cigar varchar(4000), -md_tag varchar(4000), -num_mismatches integer, -matchqual integer, -haplotype varchar(200) default null, -status bit DEFAULT 1, - -Container ENTITYID NOT NULL, -CreatedBy USERID, -Created datetime, -ModifiedBy USERID, -Modified datetime, - -CONSTRAINT PK_sequence_alignments PRIMARY KEY (rowId) - ---depreciated --- CONSTRAINT fk_sequence_alignments_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION - -); - - --- ---------------------------- --- Table structure for sequenceAnalysis.nt_snps --- ---------------------------- -EXEC core.fn_dropifexists 'nt_snps', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.nt_snps ( -RowId INT IDENTITY(1,1) NOT NULL, - -analysis_id integer NOT NULL, -alignment_id integer NOT NULL, -ref_nt_id integer NOT NULL, - -ref_nt varchar(3) NOT NULL, -ref_nt_position integer, -ref_nt_insert_index integer NOT NULL DEFAULT 0, - -q_nt varchar(3) NOT NULL, -q_nt_position integer, -q_nt_insert_index integer NOT NULL DEFAULT 0, - -status bit DEFAULT 1, - -Container ENTITYID NOT NULL, -CreatedBy USERID, -Created datetime, - -CONSTRAINT PK_nt_snps PRIMARY KEY (rowId) - ---depreciated --- CONSTRAINT fk_nt_snps_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_nt_snps_alignment_id FOREIGN KEY (alignment_id) --- REFERENCES sequenceanalysis.sequence_alignments (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION - -); - -EXEC core.fn_dropifexists 'nt_snps_ref_nt_position', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX nt_snps_ref_nt_position -ON sequenceanalysis.nt_snps (analysis_id, ref_nt_id, ref_nt_position, ref_nt_insert_index); - --- ---------------------------- --- Table structure for sequenceAnalysis.aa_snps --- ---------------------------- -EXEC core.fn_dropifexists 'aa_snps', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.aa_snps ( -RowId INT IDENTITY(1,1) NOT NULL, -analysis_id int NOT NULL, -alignment_id integer NOT NULL, -ref_nt_id integer NOT NULL, -ref_aa_id integer NOT NULL, -nt_snp_id integer NOT NULL, - -q_aa varchar(3), -q_aa_position integer, -q_aa_insert_index integer NOT NULL DEFAULT 0, -q_codon varchar(45), - -ref_aa varchar(3), -ref_aa_position integer, -ref_aa_insert_index integer NOT NULL DEFAULT 0, -translation_string varchar(250) NOT NULL, - -status bit DEFAULT 1, - -Container ENTITYID NOT NULL, -CreatedBy USERID, -Created datetime, - -CONSTRAINT PK_aa_snps PRIMARY KEY (rowId), - --- CONSTRAINT fk_aa_snps_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_aa_snps_ref_aa_id FOREIGN KEY (ref_aa_id) --- REFERENCES sequenceanalysis.ref_aa_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_aa_snps_alignment_id FOREIGN KEY (alignment_id) --- REFERENCES sequenceanalysis.sequence_alignments (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION, --- CONSTRAINT fk_aa_snps_nt_snp FOREIGN KEY (nt_snp_id) --- REFERENCES sequenceanalysis.nt_snps (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION - -) -; - -EXEC core.fn_dropifexists 'aa_snps_ref_aa_position', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX aa_snps_ref_aa_position -ON sequenceanalysis.aa_snps (analysis_id, ref_nt_id, ref_aa_id, ref_aa_position, ref_aa_insert_index); - - --- ---------------------------- --- Table structure for sequenceAnalysis.sequence_coverage --- ---------------------------- -EXEC core.fn_dropifexists 'sequence_coverage', 'sequenceanalysis', 'TABLE', NULL -GO - -CREATE TABLE sequenceAnalysis.sequence_coverage ( -RowId INT IDENTITY(1,1) NOT NULL, -analysis_id integer NOT NULL, -ref_nt_id integer NOT NULL, - -ref_nt_position integer not null, -ref_nt_insert_index integer NOT NULL DEFAULT 0, -depth integer, -adj_depth integer, -wt integer, -total_n integer, - -Container ENTITYID NOT NULL, -CreatedBy USERID, -Created datetime, - -CONSTRAINT PK_sequence_coverage PRIMARY KEY (rowId) - --- depreciated --- CONSTRAINT fk_sequence_coverage_ref_nt_id FOREIGN KEY (ref_nt_id) --- REFERENCES sequenceanalysis.ref_nt_sequences (rowid) MATCH SIMPLE --- ON UPDATE NO ACTION ON DELETE NO ACTION -); - ---note: this index is very helpful for the grouped aa_snp queries -EXEC core.fn_dropifexists 'sequence_coverage_ref_nt_position', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_coverage_ref_nt_position -ON sequenceanalysis.sequence_coverage (analysis_id, ref_nt_id, ref_nt_position, ref_nt_insert_index); - --- ---------------------------- --- Table structure for sequenceAnalysis.samples --- ---------------------------- -EXEC core.fn_dropifexists 'samples', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.samples ( -RowId INT IDENTITY(1,1) NOT NULL, -sampleName varchar(255), -vialId varchar(255), -sampleDate datetime NOT NULL, -collectDate datetime NOT NULL, - -sampleType varchar(255), -sampleSource varchar(255), -species varchar(255), -comments text default null, -workbook integer, - ---genbank_id varchar(45), - -Container ENTITYID NOT NULL, -CreatedBy USERID, -Created datetime, -ModifiedBy USERID, -Modified datetime, - -CONSTRAINT PK_samples PRIMARY KEY (rowId) - -) -; - --- ---------------------------- --- Table structure for sequenceanalysis.sample_source --- ---------------------------- -EXEC core.fn_dropifexists 'sample_source', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.sample_source ( - source varchar(105) NOT NULL, - - CONSTRAINT PK_sample_source PRIMARY KEY (source) -) -; - --- ---------------------------- --- Records of sample_source --- ---------------------------- -INSERT INTO sequenceanalysis.sample_source VALUES ('CD4'); -INSERT INTO sequenceanalysis.sample_source VALUES ('CD4-resting'); -INSERT INTO sequenceanalysis.sample_source VALUES ('CD4-resting Memory'); -INSERT INTO sequenceanalysis.sample_source VALUES ('Nasal swab'); -INSERT INTO sequenceanalysis.sample_source VALUES ('PBMC'); -INSERT INTO sequenceanalysis.sample_source VALUES ('Plasma'); -INSERT INTO sequenceanalysis.sample_source VALUES ('Supernatant'); -INSERT INTO sequenceanalysis.sample_source VALUES ('Whole Blood'); -INSERT INTO sequenceanalysis.sample_source VALUES ('Total RNA'); -INSERT INTO sequenceanalysis.sample_source VALUES ('mRNA'); -INSERT INTO sequenceanalysis.sample_source VALUES ('RNA'); - - --- ---------------------------- --- Table structure for sequenceanalysis.haplotypes --- ---------------------------- -EXEC core.fn_dropifexists 'haplotype_definitions', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.haplotype_definitions ( - rowId INT IDENTITY(1,1), - haplotypeName varchar(4000) NOT NULL, - comment text, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_haplotype_definitions PRIMARY KEY (rowId) - -) -; - --- ---------------------------- --- Table structure for sequenceanalysis.haplotype_sequences --- ---------------------------- -EXEC core.fn_dropifexists 'haplotype_sequences', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.haplotype_sequences ( - rowId INT IDENTITY(1,1), - haplotypeId integer NOT NULL, - ref_nt_id integer, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_haplotype_sequences PRIMARY KEY (rowId) - -) -; - - --- ---------------------------- --- Table structure for sequenceanalysis.haplotype_mapping --- ---------------------------- -EXEC core.fn_dropifexists 'haplotype_mapping', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.haplotype_mapping ( - rowId INT IDENTITY(1,1), - sampleId integer NOT NULL, - haplotypeId integer not null, - haplotypeType varchar(4000), - chromosomeNum integer, - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_haplotype_mapping PRIMARY KEY (rowId) - -) -; - - --- ---------------------------- --- Table structure for sequenceanalysis.haplotype_types --- ---------------------------- -EXEC core.fn_dropifexists 'haplotype_types', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.haplotype_types ( - type varchar(4000), - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_haplotype_types PRIMARY KEY (type) - -) -; - --- ---------------------------- --- Table structure for sequenceanalysis.analysis_types --- ---------------------------- -EXEC core.fn_dropifexists 'analysis_types', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.analysis_types ( - type varchar(4000), - CONSTRAINT PK_analysis_types PRIMARY KEY (type) - -) -; - -INSERT INTO sequenceanalysis.analysis_types (type) VALUES ('Virus'); -INSERT INTO sequenceanalysis.analysis_types (type) VALUES ('SBT'); - - - ---foreign keys not necessary. ---pg 8.4 and earlier doesnt support drop if exists, so we tack it on here ---also will be limiting should we ever permit direct submissions of SNPs --- ALTER TABLE sequenceanalysis.ref_aa_sequences DROP CONSTRAINT fk_ref_aa_sequences_ref_nt_id; --- ALTER TABLE sequenceanalysis.aa_snps DROP CONSTRAINT fk_aa_snps_ref_nt_id; --- ALTER TABLE sequenceanalysis.aa_snps DROP CONSTRAINT fk_aa_snps_ref_aa_id; --- ALTER TABLE sequenceanalysis.aa_snps DROP CONSTRAINT fk_aa_snps_alignment_id; --- ALTER TABLE sequenceanalysis.aa_snps DROP CONSTRAINT fk_aa_snps_nt_snp; - -/* SequenceAnalysis-0.11-11.10.sql */ - -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_a integer -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_t integer -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_g integer -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_c integer -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD total_del integer -go - -/* SequenceAnalysis-11.10-11.11.sql */ - -ALTER TABLE sequenceAnalysis.samples - drop column collectDate -ALTER TABLE sequenceAnalysis.samples - add collectDate datetime -; - -/* SequenceAnalysis-11.11-11.12.sql */ - -INSERT INTO sequenceanalysis.virus_strains -(virus_strain, genbank, species) -VALUES -('Dengue-DGV37', '', 'DENV') -; - -INSERT INTO sequenceanalysis.ref_nt_sequences -(name,category1,category2,mol_type,species,sequence) -VALUES -('Dengue-DGV37', 'Virus', 'Dengue-DGV37', 'RNA', 'DENV', 'GATTCTTTGAGGGAGCTAAGCTCAACGTAGTTCTAACAGTTTTTTAATTAGAGAGCAGATCTCTGATGAATAACCAACGAAAAAAGGCGAGAAGTACGCCTTTCAATATGCTGAAACGCGAGAGAAACCGCGTGTCAACTGTGCAACAGCTGACAAAGAGATTCTCACTTGGAATGCTGCAAGGACGCGGACCATTAAAACTGTTCATGGCCCTTGTGGCGTTCCTTCGTTTCCTAACAATCCCACCAACAGCAGGGATACTAAAAAGATGGGGAACGATCAAGAAATCAAAAGCTATCAATGTTTTGAGAGGGTTCAGGAAAGAGATTGGAAGGATGCTGAACATCTTGAACAGGAGACGTAGGACAGCAGGCGTGATTGTTATGTTGATTCCAACAGCGATGGCGTTCCATTTAACCACACGCAATGGAGAACCACACATGATCGTTGGTAGGCAGGAGAAAGGGAAAAGTCTTCTGTTCAAAACAGAGGATGGTGTTAACATGTGTACCCTCATGGCCATAGACCTTGGTGAGTTGTGTGAAGATACAATCACGTACAAGTGTCCCCTCCTCAGACAAAATGAACCAGAAGACATAGATTGTTGGTGCAACTCTACGTCCACATGGGTAACTTATGGGACATGTACCACCACAGGAGAACACAGAAGAGAAAAAAGATCAGTGGCGCTCGTTCCACATGTGGGTATGGGACTGGAGACACGAACTGAAACATGGATGTCATCAGAAGGGGCCTGGAAGCATGTTCAGAGAATTGAAACCTGGATCTTGAGACATCCAGGTTTTACCATAATGGCAGCGATCCTGGCATACACCATAGGAACGACACACTTCCAAAGGGCCTTGATTTTCATCTTACTGACAGCTGTTGCTCCTTCAATGACAATGCGCTGCATAGGAATATCAAATAGAGACTTCGTAGAAGGGGTTTCAGGAGGAAGCTGGGTTGACATCGTTTTAGAACATGGAAGTTGTGTGACGACGATGGCAAAAAACAAACCAACATTGGATTTTGAACTGATAAAAACAGAAGCCAAACAACCTGCCACTCTAAGGAAGTACTGTATAGAAGCAAAGCTGACCAACACAACAACAGAATCGCGTTGCCCAACACAAGGGGAACCCAGTCTAAATGAAGAGCAGGACAAAAGGTTCATCTGCAAACACTCCATGGTAGACAGAGGATGGGGAAATGGATGTGGATTATTTGGAAAGGGAGGCATTGTGACCTGTGCTATGTTTACATGCAAAAAGAACATGGAAGGAAAAATCGTACAGCCAGAAAATTTGGAATACACCATCGTGATAACACCTCACTCAGGAGAAGAGCACGCTGTAGGTAATGACACAGGAAAGCATGGAAAGGAAATCAAAATAACACCACAGAGTTCCACCACAGAAGCAGAACTGACAGGCTATGGCATTGTCACGATGGAGTGCTCTCCGAGAACGGGCCTCGACTTCAATGAGATGGTGCTGCTGCAGATGGAAGACAAAGCTTGGCTGGTGCACAGGCAATGGTTCCTAGACCTGCCGTTGCCATGGCTACCCGGAGCGGATACACAAGGATCAAATTGGATACAGAAAGAGACATTGGTCACTTTCAAAAACCCCCACGCCAAGAAACAGGATGTCGTTGTCTTAGGGTCTCAAGAAGGGGCCATGCACACGGCACTCACAGGGGCTACAGAAATCCAGATGTCATCAGGAAACTTACTGTTCACGGGACATCTCAAGTGCAGGCTGAGAATGGACAAACTACAGCTCAAAGGAATGTCATACTCTATGTGTACTGGAAAGTTTAAAATCGTGAAGGAAATAGCAGAAACACAACATGGAACAATAGTTATCAGAGTACAATATGAAGGGGACGGCTCTCCATGTAAGATCCCCTTTGAGATAACAGATTTGGAAAAAAGACACGTCTTAGGACGCCTGATTACAGTTAACCCAATCGTAACAGAAAAAGATAGCCCAGTCAACATAGAAGCAGAACCCCCATTCGGAGACAGTTACATCATCGTGGGAGTAGAGCCGGGACAACTGAAACTCAATTGGTTTAAGAAGGGAAGTTCCATCGGCCAAATGTTTGAGACAACAATGAGAGGAGCAAAGAGAATGGCCATTTTAGGTGACACAGCCTGGGATTTTGGATCCCTGGGAGGAGTGTTTACATCTATAGGAAAGGCTCTCCATCAAGTTTTCGGAGCAATCTATGGGGCTGCTTTTAGTGGGGTCTCATGGACTATGAAAATCCTCATAGGAGTCATCATCACATGGATAGGAATGAATTCACGTAGCACCTCACTGTCTGTGTCGCTAGTATTGGTGGGAGTCGTGACACTGTACCTGGGAGCCATGGTGCAGGCTGATAGTGGTTGCATTGTGAGCTGGAAAAATAAAGAACTGAAATGTGGCAGCGGGATCTTCATTACAGATAACGTACACACATGGACAGAGCAATATAAGTTCCAACCAGAATCCCCTTCAAAACTAGCTTCAGCTATCCAAAAAGCTCATGAAGAAGGCATTTGTGGAATCCGCTCAGTAACAAGATTGGAGAATCTGATGTGGAAACAAATAACACCAGAATTGAATCATATTCTATCAGAAAATGAGGTAAAGTTGACCATTATGACAGGAGACATTAAAGGAATCATGCAGGCAGGAAAACGATCCTTGCGGCCTCAGCCCACTGAGCTGAAGTACTCATGGAAAACATGGGGAAAGGCGAAAATGCTCTCTACAGAGTCTCACAATCAGACCTTTCTTATTGATGGCCCTGAAACAGCAGAATGCCCCAACACAAACAGAGCTTGGAACTCACTGGAAGTTGAAGACTATGGTTTTGGAGTTTTTACCACCAATATATGGCTAAAATTGAGAGAAAAACAGGATGTATTTTGTGACTCAAAACTCATGTCAGCGGCCATTAAAGACAACAGAGCCGTCCATGCCGATATGGGTTATTGGATAGAAAGTGCACTCAATGACACATGGAAGATGGAGAAAGCCTCCTTCATTGAAGTTAAAAGCTGCCACTGGCCAAAGTCACACACCCTATGGAGCAATGGAGTATTAGAAAGTGAGATGATAATTCCAAAAAATTTTGCCGGGCCAGTGTCACAACACAACTACAGACCAGGCTACCATACACAAACAGCAGGACCTTGGCATCTAGGTAAGCTTGAGATGGACTTTGATTTCTGCGAAGGAACTACAGTGGTGGTGACTGAGGACTGTGGAAATAGAGGACCCTCTTTAAGAACGACCACTGCCTCTGGAAAGCTCATAACAGAATGGTGCTGCCGATCCTGCACACTACCACCTCTAAGATACAGAGGTGAGGATGGATGCTGGTACGGGATGGAAATCAGACCTTTGAAAGAGAAAGAAGAGAACTTGGTCAACTCCTTGGTCACAGCCGGACATGGGCAGATTGACAACTTTTCACTAGGAGTCTTGGGAATGGCACTGTTCCTGGAAGAAATGCTTAGGACCCGAGTAGGAACGAAACATGCAATACTGCTAGTTGCACTATCTTTCGTGACATTGATTACTGGGAACATGTCTTTTAGAGACCTGGGAAGAGTGATGGTCATGGTGGGTGCTACCATGACGGATGACATAGGTATGGGAGTGACTTATCTTGCCCTACTAGCAGCTTTCAAAGTTAGACCAACTTTTGCAGCTGGACTACTCTTGAGAAAACTGACCTCCAAGGAATTGATGATGGCCACCATAGGAATCGCACTCCTTTCCCAAAGCACCTTGCCAGAGACCATTCTAGAACTGACTGATGCGTTAGCCTTGGGCATGATGGCCCTCAAAATAGTGAGAAATATGGAAAAATACCAATTGGCAGTGACTATCATGGCTATTTCGTGTGTCCCAAATGCAGTGATATTGCAAAACGCATGGAAGGTGAGTTGCACAATATTGGCAGCGGTGTCCGTTTCTCCACTGCTCCTAACATCCTCACAGCAGAAAGCGGATTGGATACCACTGGCACTGACGATAAAAGGTCTCAACCCAACAGCTATTTTTTTAACAACTCTTTCGAGAACCAGCAAGAAAAGGAGCTGGCCGCTAAATGAAGCTATCATGGCAGTCGGGATGGTGAGCATTTTAGCCAGTTCTCTCCTAAAGAATGATATTCCTATGACAGGTCCATTAGTGGCTGGAGGGCTCCTCACCGTATGTTACGTGCTCACTGGACGATCGGCCGATTTGGAACTGGAGAGAGCTGCCGATGTAAAATGGGAAGATCAGGCAGAAATATCAGGAAGCAGCCCAATTCTGTCAATAACAATATCAGAAGATGGCAGCATGTCGATAAAAAATGAAGAGGAAGAACAAACACTGACCATACTCATTAGGACGGGATTGTTGGTGATCTCAGGAGTCTTTCCAGTATCGATACCAATCACGGCAGCAGCATGGTACCTGTGGGAAGTGAAGAAACAACGGGCTGGAGTATTGTGGGACGTCCCTTCACCCCCACCAGTGGGAAAAGCCGAACTGGAAGATGGAGCCTATAGAATCAAGCAAAGAGGGATTCTTGGATATTCTCAGATTGGAGCCGGAGTTTACAAAGAAGGAACATTCCATACAATGTGGCACGTCACACGTGGTGCTGTTCTGATGCATAGAGGGAAGAGGATTGAACCATCATGGGCAGATGTCAAGAAAGATCTAATATCATATGGAGGAGGCTGGAAGCTAGAAGGAGAATGGAAGGAAGGAGAGGAAGTTCAAGTCCTGGCATTGGAACCTGGAAAAAATCCCAGAGCTGTCCAAACGAAACCTGGAATTTTCAAAACCAACACCGGAACCATAGGCGCTGTATCTCTGGACTTTTCCCCTGGAACGTCAGGATCTCCAATTGTCGACAGAAAAGGAAAAGTTGTGGGTCTTTATGGTAATGGTGTTGTCACAAGGAGTGGAGCATACGTAAGTGCCATAGCCCAGACCGAAAAAAGCATTGAAGACAATCCAGAGATCGAAGATGACATTTTCCGAAAGAAAAGATTGACCATCATGGACCTCCATCCAGGGGCAGGAAAGACAAAAAGATACCTTCCAGCCATAGTTAGAGAAGCCATAAAACGTGGCTTGAGAACATTAATCCTGGCTCCCACTAGAGTCGTGGCAGCTGAAATGGAGGAAGCTCTTAGAGGACTCCCAATAAGATACCAAACCCCAGCCATCAGAGCCGAGCACACCGGGCGAGAGATCGTGGACCTAATGTGTCATGCCACATTTACTATGAGGCTGCTATCACCAGTCAGAGTGCCAAATTACAACCTGATTATCATGGACGAAGCCCACTTCACAGACCCAGCAAGCATAGCAGCTAGAGGATACATTTCAACTCGAGTAGAGATGGGTGAAGCAGCCGGGATTTTTATGACAGCCACTCCTCCGGGAAGCAGAGACCCATTTCCTCAGAGCAATGCACCAATCATGGATGAGGAAAGAGAAATCCCTGAGCGTTCATGGAATTCAGGACATGAATGGGTCACGGATTTTAAAGGGAAGACTGTTTGGTTTGTTCCAAGTATAAAAGCAGGAAATGACATAGCAGCTTGTCTTAGGAAAAATGGAAAGAAAGTGATACAACTCAGTAGGAAGACTTTTGACTCTGAGTATGTTAAGACTAGAGCCAATGATTGGGACTTTGTGGTCACAACTGACATTTCAGAAATGGGTGCCAACTTCAAGGCTGAGAGGGTTATAGACCCTAGACGCTGCATGAAACCAGTTATACTAACAGATGGCGAAGAGCGGGTGATCTTGGCAGGACCTATGCCAGTGACCCACTCTAGTGCAGCGCAAAGAAGAGGGAGAATAGGAAGAAATCCAAAAAATGAAAATGACCAGTACATATACATGGGGGAACCTCTCGAAAATGATGAAGACTGTGCACACTGGAAAGAAGCTAAAATGCTCCTAGATAACATCAACACACCCGAAGGAATCATTCCTAGTATGTTCGAACCAGAGCGTGAAAAAGTGGATGCCATTGATGGTGAATACCGTTTGAGAGGAGAAGCAAGGAAAACCTTTGTGGACCTAATGAGAAGAGGGGACTTACCAGTCTGGTTGGCCTACAAAGTGGCAGCTGAAGGCATCAACTACGCAGACAGAAAGTGGTGTTTTGATGGAATCAAGAACAACCAAATACTGGAAGAAAATGTGGAAGTGGAAATCTGGACAAAAGAAGGGGAAAGGAAAAAATTAAAACCCAGATGGTTGGATGCTAGGATCTATTCTGATCCACTGGCACTAAAAGAATTCAAGGAATTTGCAGCTGGCAGAAAATCTTTGACCCTGAACCTAATCACAGAAATGGGTAGGCTTCCAACTTTCATGACTCAGAAGGCAAGAAACGCACTGGACAACTTGGCTGTGCTGCATACGGCTGAGGTAGGTGGAAAGGCGTACACTCATGCTCTCAGTGAACTGCCGGAGACTCTGGAGACACTGCTTCTACTGACACTCCTGGCAGCAGTCACAGGAGGAATCTTCTTATTCTTAATGAGCGGAAAAGGTATAGGGAAGATGACTCTGGGAATGTGTTGCATAATCACAGCTAGCATTCTCCTATGGTATGCACAGATACAACCACACTGGATAGCAGCTTCAATAATACTGGAGTTTTTTCTCATAGTTTTGCTCATTCCAGAACCAGAAAAACAGAGAACACCCCAAGACAACCAATTGACCTACGTTGTCATAGCCATCCTCACAGTGGTGGCCGCAACCATGGCAAACGAGATGGGTTTCCTGGAAAAAACCAAGAAAGACTTCGGATTTGGAAGCATTACAACCCAGGAATCTGAGAGCAACATCCTGGACATAGATCTACGTCCTGCATCAGCATGGACGCTGTATGCCGTGGCTACAACATTTGTCACACCAATGTTGCGACATAGCATTGAAAATTCCTCAGTAAATGTCTCCCTAACAGCCATTGCTAACCAAGCTACAGTGCTAATGGGTCTTGGGAAAGGATGGCCATTGTCAAAGATGGACATCGGAGTTCCCCTCCTTGCCATTGGATGCTACTCACAAGTCAACCCTATAACCCTCACAGCAGCTCTTCTTTTATTGGTAGCACATTATGCCATTATAGGGCCAGGACTTCAAGCAAAAGCAACCAGAGAAGCTCAGAAAAGAGCAGCAGCAGGCATCATGAAAAACCCAACAGTCGATGGAATAACAGTGATTGACCTGGAACCAATACCCTATGATCCAAAATTTGAAAAGCAGTTAGGACAAGTAATGCTCCTAATCCTCTGCGTGACTCAAGTATTAATGATGAGGACTACATGGGCTTTGTGTGAGGCTCTAACCCTAGCGACCGGGCCCATCTCCACACTATGGGAAGGAAATCCAGGGAGATTTTGGAACACCACCATTGCAGTGTCAATGGCTAACATCTTTAGGGGGAGCTACTTGGCCGGAGCTGGACTTCTCTTTTCCATCATGAAGAACACAACAAACACAAGAAGAGGAACTGGCAACGTAGGAGAGACACTTGGAGAAAAATGGAAAAGCCGATTAAATGCACTGGGAAAAAGTGAATTTCAGATCTACAAGAAAAGTGGAATCCAGGAAGTGGATAGAACCCTAGCAAAAGAAGGCATCAAAAGAGGAGAAACGGACCACCATGCTGTGTCACGAGGATCAGCAAAACTGAGATGGTTCGTCGAGAGAAACATGGTCACACCGGAAGGGAAGGTGGTGGATCTTGGTTGCGGCAGAGGGGGCTGGTCATACTATTGTGGGGGACTAAAGAATGTAAGAGAAGTCAAAGGCCTAACAAAAGGAGGACCAGGACACGAAGAACCCATCCCCATGTCAACATATGGGTGGAATCTAGTGCGTCTGCAAAGTGGGGTCGACGTTTTTTTCACCCCGCCAGAAAAGTGTGATACATTGTTGTGTGACATAGGGGAGTCGTCACCAAATCCCACGATAGAAGCAGGACGAACACTCAGAGTCCTCAACTTAGTGGAAAATTGGCTGAACAATAACACCCAATTTTGCATAAAGGTCCTCAATCCATATATGCCCTCAGTCATAGAAAAAATGGAAACACTACAAAGGAAATATGGAGGAGCCTTAGTGAGGAATCCACTCTCACGAAACTCCACGCATGAAATGTACTGGGTATCTAATGCTACCGGGAACATAGTGTCATCAGTGAACATGATTTCAAGGATGTTGATTAACAGATTCACAATGAAACATAAGAAAGCCACCTACGAGCCAGATGTTGACCTAGGAAGTGGAACCCGCAACATTGGAATTGAAAGTGAGATACCAAATCTAGACATAATAGGAAAGAGAATAGAGAAAATAAAACAAGAGCATGAAACATCATGGCATTATGACCAAGACCACCCATACAAAACGTGGGCTTACCATGGCAGCTATGAAACAAAACAAACTGGATCAGCATCATCTATGGTGAACGGAGTGGTCAGACTGCTGACAAAACCTTGGGACGTCGTTCCTATGGTGACACAGATGGCAATGACAGACACGACTCCATTTGGACAACAGCGCGTTTTCAAAGAGAAAGTGGACACGAGAACTCAAGAACCGAAGGAAGGCACAAAGAAACTGATGAAAATTACGGCAGAGTGGCTTTGGAAAGAACTAGGAAAGGAAAAGACACCTAGAATGTGTACCAGAGAAGAATTCACAAGAAAAGTGAGAAGCAATGCAGCCTTGGGGGCCGTATTCACTGATGAGAACAAATGGAAATCGGCACGTGAGGCTGTTGAAGATGGTAGGTTTTGGGAGCTGGTTGACAGGGAAAGAAATCTCCATCTTGAAGGAAAGTGTGAAACATGTGTGTACAACATGATGGGAAAAAGAGAGAAGAAACTAGGGGAGTTCGGCAAGGCAAAAGGTAGCAGAGCCATATGGTACATGTGGCTTGGAGCACGCTTCTTAGAGTTTGAAGCCCTAGGATTTCTGAATGAAGATCACTGGTTCTCCAGAGGGAACTCCCTGAGTGGAGTGGAAGGAGAAGGGCTGCACAGGCTAGGCTACATTTTAAGAGAGGTGGGCAAGAAGGAAGGAGGAGCAATGTACGCCGATGATACAGCAGGATGGGACACAAGAATCACACTAGAAGACTTAAAAAATGAAGAAATGGTAACAAACCACATGAAAGGAGAACACAAGAAACTAGCCGAGGCCATATTCAAATTAACGTACCAAAACAAGGTGGTGCGTGTGCAAAGACCAACACCAAGAGGCACAGTAATGGATATCATATCGAGAAAAGACCAAAGAGGCAGTGGGCAAGTCGGTACCTATGGCCTTAATACTTTCACCAATATGGAAGCCCAATTAATTAGACAGATGGAAGGAGAAGGAATCTTCAAAAGCATTCAGCACCTGACCGCCACAGAAGAAATCGCTGTACAGAACTGGTTAGCAAGAGTGGGGCGTGAAAGGCTATCAAGAATGGCCATCAGTGGAGATGACTGTGTTGTAAAACCTATAGATGACAGATTTGCAAGTGCTCTAACAGCTCTAAATGACATGGGAAAAGTTAGGAAAGATATACAACAATGGGAACCTTCAAGAGGATGGAACGATTGGACACAGGTGCCTTTCTGTTCACACCATTTTCATGAGTTAGTCATGAAAGATGGTCGCGTGCTCGTAGTCCCATGCAGAAACCAAGATGAACTGATTGGCAGAGCCCGAATTTCCCAGGGAGCCGGGTGGTCTTTGAAGGAGACGGCTTGTTTGGGGAAGTCTTACGCCCAAATGTGGACCCTGATGTACTTCCACAGACGTGACCTCAGATTGGCGGCAAATGCCATTTGCTCGGCAGTCCCGTCACATTGGGTTCCAACAAGTCGAACAACCTGGTCCATACACGCCAAGCATGAATGGATGACGACGGAAGACATGCTGGCAGTCTGGAACAGGGTGTGGATCCAAGAAAACCCATGGATGGAAGACAAAACTCCAGTGGAATCATGGGAAGAAGTCCCATACCTGGGGAAAAGGGAAGACCAATGGTGCGGCTCATTGATTGGGCTAACAAGCAGGGCTACCTGGGCAAAGAATATCCAGACAGCAATAAATCAAGTCAGATCCCTTATAGGCAATGAGGGATACACAGACTACATGCCATCCATGAAGAGATTCAGAAGGGAAGAGGAAGAGGCAGGTGTCCTGTGGTAGAAGGCGAGACCAACATAAAACAAGGCTGAAAGTCAGGTCGGATTAAGCCATAGTACGGGAAAAACTATGCTACCTGTGAGCCCCGTCCAAGGACGTAAAAAGAAGTCAGGCCATCACAAATGCCACAGCTTGAGCAAACTGTGCAGCCTGTAGCTCCACCTGAGGAGGTGTAAAAACCCGGGAGGCCACAAACCATGGAAGCTGTACGCATGGCGTAGTGGACTAGCGGTTAGAGGAGACCCCTCCCTTACAAATCGCAGCAACAACGGGGGCCCAAGGTGAGATGAAGCTGTAGTCTCACTGGAAGGACTAGAGGTTAGAGGAGACCCCCCCAAAACAAAAAACAGCATATTGACG') -; - - -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('66-407', '66', 'MNNQRKKARSTPFNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILKRWGTIKKSKAINVLRGFRKEIGRMLNILNRRRRTAGVIVMLIPTAMA', 'Capsid', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('408-905', '408', 'FHLTTRNGEPHMIVGRQEKGKSLLFKTEDGVNMCTLMAIDLGELCEDTITYKCPLLRQNEPEDIDCWCNSTSTWVTYGTCTTTGEHRREKRSVALVPHVGMGLETRTETWMSSEGAWKHVQRIETWILRHPGFTIMAAILAYTIGTTHFQRALIFILLTAVAPSMT', 'Protein M', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('906-2390', '906', 'MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPSLNEEQDKRFICKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTIVITPHSGEEHAVGNDTGKHGKEIKITPQSSTTEAELTGYGIVTMECSPRTGLDFNEMVLLQMEDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKIVKEIAETQHGTIVIRVQYEGDGSPCKIPFEITDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIVGVEPGQLKLNWFKKGSSIGQMFETTMRGAKRMAILGDTAWDFGSLGGVFTSIGKALHQVFGAIYGAAFSGVSWTMKILIGVIITWIGMNSRSTSLSVSLVLVGVVTLYLGAMVQA', 'Envelope', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('2391-3446', '2391', 'DSGCIVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTRLENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELKYSWKTWGKAKMLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDYGFGVFTTNIWLKLREKQDVFCDSKLMSAAIKDNRAVHADMGYWIESALNDTWKMEKASFIEVKSCHWPKSHTLWSNGVLESEMIIPKNFAGPVSQHNYRPGYHTQTAGPWHLGKLEMDFDFCEGTTVVVTEDCGNRGPSLRTTTASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTA', 'NS1', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('3447-4100', '3447', 'GHGQIDNFSLGVLGMALFLEEMLRTRVGTKHAILLVALSFVTLITGNMSFRDLGRVMVMVGATMTDDIGMGVTYLALLAAFKVRPTFAAGLLLRKLTSKELMMATIGIALLSQSTLPETILELTDALALGMMALKIVRNMEKYQLAVTIMAISCVPNAVILQNAWKVSCTILAAVSVSPLLLTSSQQKADWIPLALTIKGLNPTAIFLTTLSRTSKKR', 'NS2A', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('4101-4490', '4101', 'SWPLNEAIMAVGMVSILASSLLKNDIPMTGPLVAGGLLTVCYVLTGRSADLELERAADVKWEDQAEISGSSPILSITISEDGSMSIKNEEEEQTLTILIRTGLLVISGVFPVSIPITAAAWYLWEVKKQR', 'NS2B', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('4491-6344', '4491', 'AGVLWDVPSPPPVGKAELEDGAYRIKQRGILGYSQIGAGVYKEGTFHTMWHVTRGAVLMHRGKRIEPSWADVKKDLISYGGGWKLEGEWKEGEEVQVLALEPGKNPRAVQTKPGIFKTNTGTIGAVSLDFSPGTSGSPIVDRKGKVVGLYGNGVVTRSGAYVSAIAQTEKSIEDNPEIEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYVKTRANDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRIGRNPKNENDQYIYMGEPLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRRGDLPVWLAYKVAAEGINYADRKWCFDGIKNNQILEENVEVEIWTKEGERKKLKPRWLDARIYSDPLALKEFKEFAAGRK', 'NS3', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('6345-6725', '6345', 'SLTLNLITEMGRLPTFMTQKARNALDNLAVLHTAEVGGKAYTHALSELPETLETLLLLTLLAAVTGGIFLFLMSGKGIGKMTLGMCCIITASILLWYAQIQPHWIAASIILEFFLIVLLIPEPEKQR', 'NS4A', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('6726-6794', '6726', 'TPQDNQLTYVVIAILTVVAATMA', '2K Peptidase', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('6795-7538', '6795', 'NEMGFLEKTKKDFGFGSITTQESESNILDIDLRPASAWTLYAVATTFVTPMLRHSIENSSVNVSLTAIANQATVLMGLGKGWPLSKMDIGVPLLAIGCYSQVNPITLTAALLLLVAHYAIIGPGLQAKATREAQKRAAAGIMKNPTVDGITVIDLEPIPYDPKFEKQLGQVMLLILCVTQVLMMRTTWALCEALTLATGPISTLWEGNPGRFWNTTIAVSMANIFRGSYLAGAGLLFSIMKNTTNTRR', 'NS4B', '38'); -INSERT into sequenceAnalysis.ref_aa_sequences (exons, start_location, sequence, name, ref_nt_id) VALUES ('7539-10238', '7539', 'GTGNVGETLGEKWKSRLNALGKSEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNMVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFTPPEKCDTLLCDIGESSPNPTIEAGRTLRVLNLVENWLNNNTQFCIKVLNPYMPSVIEKMETLQRKYGGALVRNPLSRNSTHEMYWVSNATGNIVSSVNMISRMLINRFTMKHKKATYEPDVDLGSGTRNIGIESEIPNLDIIGKRIEKIKQEHETSWHYDQDHPYKTWAYHGSYETKQTGSASSMVNGVVRLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTQEPKEGTKKLMKITAEWLWKELGKEKTPRMCTREEFTRKVRSNAALGAVFTDENKWKSAREAVEDGRFWELVDRERNLHLEGKCETCVYNMMGKREKKLGEFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWFSRGNSLSGVEGEGLHRLGYILREVGKKEGGAMYADDTAGWDTRITLEDLKNEEMVTNHMKGEHKKLAEAIFKLTYQNKVVRVQRPTPRGTVMDIISRKDQRGSGQVGTYGLNTFTNMEAQLIRQMEGEGIFKSIQHLTATEEIAVQNWLARVGRERLSRMAISGDDCVVKPIDDRFASALTALNDMGKVRKDIQQWEPSRGWNDWTQVPFCSHHFHELVMKDGRVLVVPCRNQDELIGRARISQGAGWSLKETACLGKSYAQMWTLMYFHRRDLRLAANAICSAVPSHWVPTSRTTWSIHAKHEWMTTEDMLAVWNRVWIQENPWMEDKTPVESWEEVPYLGKREDQWCGSLIGLTSRATWAKNIQTAINQVRSLIGNEGYTDYMPSMKRFRREEEEAGVLW', 'NS5', '38'); - -/* SequenceAnalysis-11.12-11.13.sql */ - -EXEC core.fn_dropifexists 'nt_snps_ref_nt_position', 'sequenceanalysis', 'INDEX', NULL -GO -EXEC core.fn_dropifexists 'aa_snps_ref_aa_position', 'sequenceanalysis', 'INDEX', NULL -GO - - ---we index container and also other FK relationships - -EXEC core.fn_dropifexists 'nt_snps_ref_nt_position', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX aa_snps_container -ON sequenceanalysis.aa_snps (container); - -EXEC core.fn_dropifexists 'nt_snps_container', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX nt_snps_container -ON sequenceanalysis.nt_snps (container); - -EXEC core.fn_dropifexists 'sequence_alignments_container', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_alignments_container -ON sequenceanalysis.sequence_alignments (container); - -EXEC core.fn_dropifexists 'sequence_analyses_container', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_analyses_container -ON sequenceanalysis.sequence_analyses (container); - -EXEC core.fn_dropifexists 'sequence_coverage_container', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_coverage_container -ON sequenceanalysis.sequence_coverage (container); - -EXEC core.fn_dropifexists 'sequence_reads_container', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_reads_container -ON sequenceanalysis.sequence_reads (container); - ---analysis id -EXEC core.fn_dropifexists 'aa_snps_analysis_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX aa_snps_analysis_id -ON sequenceanalysis.aa_snps (analysis_id); - -EXEC core.fn_dropifexists 'nt_snps_analysis_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX nt_snps_analysis_id -ON sequenceanalysis.nt_snps (analysis_id); - -EXEC core.fn_dropifexists 'sequence_alignments_analysis_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_alignments_analysis_id -ON sequenceanalysis.sequence_alignments (analysis_id); - -EXEC core.fn_dropifexists 'sequence_coverage_analysis_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_coverage_analysis_id -ON sequenceanalysis.sequence_coverage (analysis_id); - -EXEC core.fn_dropifexists 'sequence_reads_analysis_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_reads_analysis_id -ON sequenceanalysis.sequence_reads (analysis_id); - ---ref_nt_id -EXEC core.fn_dropifexists 'aa_snps_ref_nt_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX aa_snps_ref_nt_id -ON sequenceanalysis.aa_snps (ref_nt_id); - -EXEC core.fn_dropifexists 'nt_snps_ref_nt_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX nt_snps_ref_nt_id -ON sequenceanalysis.nt_snps (ref_nt_id); - -EXEC core.fn_dropifexists 'sequence_alignments_ref_nt_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_alignments_ref_nt_id -ON sequenceanalysis.sequence_alignments (ref_nt_id); - -EXEC core.fn_dropifexists 'sequence_coverage_ref_nt_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX sequence_coverage_ref_nt_id -ON sequenceanalysis.sequence_coverage (ref_nt_id); - ---alignment_id -EXEC core.fn_dropifexists 'aa_snps_alignment_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX aa_snps_alignment_id -ON sequenceanalysis.aa_snps (alignment_id); - -EXEC core.fn_dropifexists 'nt_snps_alignment_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX nt_snps_alignment_id -ON sequenceanalysis.nt_snps (alignment_id); - ---nt_snp_id -EXEC core.fn_dropifexists 'aa_snps_nt_snp_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX aa_snps_nt_snp_id -ON sequenceanalysis.aa_snps (nt_snp_id); - ---ref_aa_id -EXEC core.fn_dropifexists 'aa_snps_ref_aa_id', 'sequenceanalysis', 'INDEX', NULL -GO -CREATE INDEX aa_snps_ref_aa_id -ON sequenceanalysis.aa_snps (ref_aa_id); - -/* SequenceAnalysis-11.21-11.22.sql */ - -alter table sequenceAnalysis.site_module_properties - drop column container - ; - -EXEC core.fn_dropifexists 'chemistries', 'sequenceanalysis', 'TABLE', NULL -GO -EXEC core.fn_dropifexists 'sequence_platforms', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceanalysis.sequence_platforms ( - platform varchar(45) NOT NULL, - aliases varchar(200), - - CONSTRAINT PK_sequence_platforms PRIMARY KEY (platform) -) -; - --- ---------------------------- --- Records of sequenceAnalysis.sequence_platforms --- ---------------------------- -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('ILLUMINA', 'SLX,SOLEXA'); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('SOLID', null); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('LS454', '454'); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('COMPLETE_GENOMICS', 'COMPLETE'); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('PACBIO', null); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('ION_TORRENT', 'IONTORRENT'); -INSERT INTO sequenceanalysis.sequence_platforms (platform,aliases) VALUES ('SANGER', null); - -update sequenceAnalysis.sequence_reads set chemistry = 'LS454' where chemistry = 'Pyrosequencing'; - -delete from sequenceAnalysis.site_module_properties where prop_name = 'contactEmail'; -insert into sequenceAnalysis.site_module_properties (prop_name, stringValue) VALUES ('contactEmail', 'bbimber@labkey.com'); - -EXEC core.fn_dropifexists 'sequence_readsets', 'sequenceanalysis', 'TABLE', NULL -GO -CREATE TABLE sequenceAnalysis.sequence_readsets ( -RowId INT IDENTITY(1,1) NOT NULL, -name varchar(220), -subjectid integer, -sampleid integer, -platform varchar(100), -comments text default null, - -Container ENTITYID NOT NULL, -CreatedBy USERID, -Created datetime, -ModifiedBy USERID, -Modified datetime, - -CONSTRAINT PK_sequence_readsets PRIMARY KEY (rowId) -); - - -alter table sequenceAnalysis.sequence_analyses - add readset integer -; - -ALTER TABLE sequenceAnalysis.sequence_reads - add readset integer -; - - ---populate readsets based on sequence_reads -insert into sequenceAnalysis.sequence_readsets -(sampleid,container,created,createdby,modified,modifiedby,platform) -(select a.sampleid,container,created,createdby,modified,modifiedby, 'LS454' as platform -FROM sequenceAnalysis.sequence_analyses a -GROUP BY a.sampleid, container,created,createdby,modified,modifiedby -); - -go ---then update sequence_reads based on readsets -UPDATE sequenceAnalysis.sequence_reads -SET sequence_reads.readset = ( -select sequence_readsets.rowid -from sequenceAnalysis.sequence_readsets -join sequenceAnalysis.sequence_analyses -on (sequence_analyses.sampleid=sequence_readsets.sampleid) -WHERE sequence_reads.analysis_id=sequence_analyses.rowid); - -/* SequenceAnalysis-11.22-11.23.sql */ - ---moved to the laboratory module: -EXEC core.fn_dropifexists 'species', 'sequenceanalysis', 'TABLE', NULL -GO -EXEC core.fn_dropifexists 'sample_source', 'sequenceanalysis', 'TABLE', NULL -GO -EXEC core.fn_dropifexists 'external_dbs', 'sequenceanalysis', 'TABLE', NULL -GO -EXEC core.fn_dropifexists 'geographic_origins', 'sequenceanalysis', 'TABLE', NULL -GO -EXEC core.fn_dropifexists 'dna_mol_type', 'sequenceanalysis', 'TABLE', NULL -GO - -alter table sequenceAnalysis.sequence_readsets - add fileid integer - ; - -/* SequenceAnalysis-11.23-11.24.sql */ - -alter table sequenceAnalysis.nt_snps - add quality_score double precision -alter table sequenceAnalysis.nt_snps - add avg_qual double precision - go - -alter table sequenceAnalysis.aa_snps - add avg_qual double precision - ; - -go - - -alter table sequenceAnalysis.sequence_analyses - add alignmentFile integer -alter table sequenceAnalysis.sequence_analyses - add snpFile integer -go -; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.24-11.25.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.24-11.25.sql deleted file mode 100644 index 108d42773..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.24-11.25.sql +++ /dev/null @@ -1,42 +0,0 @@ -/* - * Copyright (c) 2011-2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -alter table sequenceanalysis.sequence_readsets - drop column subjectid -alter table sequenceanalysis.sequence_readsets - add subjectid varchar(200) -; - - -alter table sequenceanalysis.ref_nt_sequences - add aliases varchar(1000) - ; - -alter table sequenceanalysis.aa_snps - add raw_reads integer -alter table sequenceanalysis.aa_snps - add adj_reads integer -alter table sequenceanalysis.aa_snps - add raw_depth integer -alter table sequenceanalysis.aa_snps - add adj_depth integer -alter table sequenceanalysis.aa_snps - add raw_percent integer -alter table sequenceanalysis.aa_snps - add adj_percent integer -alter table sequenceanalysis.aa_snps - add nt_positions varchar(50) -; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.25-11.26.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.25-11.26.sql deleted file mode 100644 index 014b505a8..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.25-11.26.sql +++ /dev/null @@ -1,112 +0,0 @@ -/* - * Copyright (c) 2011-2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - ---drop column default -declare @name nvarchar(32), - @sql nvarchar(1000) - --- find constraint name -select @name = O.name -from sys.default_constraints O -where parent_object_id = object_id('sequenceanalysis.sequence_alignments') -AND type = 'D' -and O.name like '%haplo%' - --- delete if found -if not @name is null -begin - select @sql = 'ALTER TABLE sequenceanalysis.sequence_alignments DROP CONSTRAINT [' + @name + ']' - execute sp_executesql @sql -end - -alter table sequenceanalysis.sequence_alignments - drop column haplotype -; - -alter table sequenceanalysis.samples - drop column workbook -; - ---drop column default -select @name = null; -select @sql = null; - --- find constraint name -select @name = O.name -from sys.default_constraints O -where parent_object_id = object_id('sequenceanalysis.sequence_analyses') -AND type = 'D' -and O.name like '%sampl%' - --- delete if found -if not @name is null -begin - select @sql = 'ALTER TABLE sequenceanalysis.sequence_analyses DROP CONSTRAINT [' + @name + ']' - execute sp_executesql @sql -end - -alter table sequenceanalysis.sequence_analyses - drop column sampleid -; - -alter table sequenceanalysis.haplotype_types - drop column container -; -alter table sequenceanalysis.haplotype_types - drop column created -; -alter table sequenceanalysis.haplotype_types - drop column createdby -; -alter table sequenceanalysis.haplotype_types - drop column modified -; -alter table sequenceanalysis.haplotype_types - drop column modifiedby -; - -alter table sequenceanalysis.haplotype_sequences - drop column container -; - -drop table sequenceanalysis.haplotype_mapping; -drop table sequenceanalysis.haplotype_definitions; - -CREATE TABLE sequenceanalysis.haplotypes ( - name varchar(200) NOT NULL, - type varchar(200), - comment text, - - CreatedBy USERID, - Created datetime, - ModifiedBy USERID, - Modified datetime, - - CONSTRAINT PK_haplotypes PRIMARY KEY (name) - -); - - -EXEC sp_rename 'sequenceanalysis.ref_nt_sequences.category1', 'category', 'COLUMN'; -GO -EXEC sp_rename 'sequenceanalysis.ref_nt_sequences.category2', 'subset', 'COLUMN'; -GO -EXEC sp_rename 'sequenceanalysis.ref_nt_sequences.category3', 'locus', 'COLUMN'; -GO -EXEC sp_rename 'sequenceanalysis.ref_nt_sequences.category4', 'lineage', 'COLUMN'; -GO - -; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.26-11.27.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.26-11.27.sql deleted file mode 100644 index 48fcfd5f3..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.26-11.27.sql +++ /dev/null @@ -1,52 +0,0 @@ -/* - * Copyright (c) 2011-2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_a double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_t double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_g double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_c double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_n double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD avgqual_del double precision -; - -ALTER TABLE sequenceAnalysis.nt_snps - ADD pvalue double precision -; - -ALTER TABLE sequenceAnalysis.aa_snps - ADD min_pvalue double precision -; - -ALTER TABLE sequenceAnalysis.sequence_analyses - add reference_library integer -; - -ALTER TABLE sequenceAnalysis.sequence_readsets - add barcode5 varchar(100) -; - -ALTER TABLE sequenceAnalysis.sequence_readsets - add barcode3 varchar(100) -; - -CREATE INDEX aa_snps_ref_aa_position_codon -ON sequenceanalysis.aa_snps (analysis_id, ref_nt_id, ref_aa_id, ref_aa_position, ref_aa_insert_index, ref_aa, q_aa, q_codon); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.27-11.28.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.27-11.28.sql deleted file mode 100644 index 9cc0f55fc..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.27-11.28.sql +++ /dev/null @@ -1,33 +0,0 @@ -/* - * Copyright (c) 2011-2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_a double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_t double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_g double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_c double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_n double precision -ALTER TABLE sequenceAnalysis.sequence_coverage - ADD pvalue_del double precision -; - -ALTER TABLE sequenceAnalysis.sequence_readsets - add raw_input_file integer -; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.28-11.29.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.28-11.29.sql deleted file mode 100644 index 52827127d..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.28-11.29.sql +++ /dev/null @@ -1,36 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -ALTER TABLE sequenceanalysis.sequence_alignments - ALTER COLUMN read_id integer NULL; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN adj_percent double precision; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN raw_percent double precision; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN adj_depth double precision; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN raw_depth double precision; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN adj_reads double precision; - -ALTER TABLE sequenceanalysis.aa_snps - ALTER COLUMN raw_reads double precision; diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.29-11.30.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.29-11.30.sql deleted file mode 100644 index 9c68a0205..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.29-11.30.sql +++ /dev/null @@ -1,21 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -ALTER TABLE sequenceanalysis.sequence_readsets - ADD qc_file integer; - -ALTER TABLE sequenceanalysis.sequence_analyses - ADD qc_file integer; \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.30-11.34.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.30-11.34.sql deleted file mode 100644 index e63b2dd81..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.30-11.34.sql +++ /dev/null @@ -1,718 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -/* SequenceAnalysis-11.31-11.32.sql */ - -update sequenceanalysis.ref_aa_features set category = 'Protein Domain' where "name" in ( -'p17 Matrix', -'p24 Capsid', -'p2', -'p7 Nucleocapsid', -'p1', -'p6', -'Gag-Pol Fusion TF protein', -'Protease', -'p66 RT', -'RNAse H', -'Integrase', -'gp120', -'gp41', -'Signal', -'C1', -'V1', -'V2', -'C2', -'V3', -'C3', -'V4', -'C4', -'V5', -'C5', -'gp120', -'gp41' -); - ---add epitopes -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '4', '16', '581', '589', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '4', '16', '532', '540', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '4', '16', '725', '733', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '4', '16', '236', '244', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '4', '12', '967', '975', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '4', '15', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '4', '14', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Env KV9', 'KLTSCNTSV', '5', '42', '192', '200', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PY9', 'PIDNDTTSY', '5', '42', '183', '191', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RRGWEVLKY', '5', '42', '787', '795', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV10', 'VPTDPNPPEV', '5', '42', '75', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KLTPLCVTL', '5', '42', '121', '129', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV9', 'KLTSCNTSV', '5', '42', '192', '200', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RT10', 'RGPGRAFYTT', '5', '42', '311', '320', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV10', 'SLLNATAIAV', '5', '42', '813', '822', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV10', 'KLWVTVYYGV', '5', '42', '33', '42', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV9', 'LWVTVYYGV', '5', '42', '34', '42', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL9', 'QMHEDIISL', '5', '42', '103', '111', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IISLWDQSL', '5', '42', '108', '116', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('P18', 'RIQRGPGRAFVTIGK', '5', '42', '308', '322', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TLSQIVTKL', '5', '42', '341', '349', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI9', 'WLWYIKIFI', '5', '42', '678', '686', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FV9', 'FIMIVGGLV', '5', '42', '685', '693', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'RLRDLLLIV', '5', '42', '770', '778', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LLQYWSQEL', '5', '42', '799', '807', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV9', 'LLNATAIAV', '5', '42', '814', '822', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9', 'RVIEVLQRA', '5', '42', '828', '836', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL17', 'RLVSGFLALAWDDLRSL', '5', '42', '747', '763', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9', 'RIRQGLERA', '5', '42', '846', '854', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TVYYGVPVW', '5', '42', '37', '45', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK11', 'VTVYYGVPVWK', '5', '42', '36', '46', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TVYYGVPVWK', '5', '42', '37', '46', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TTLFCASDAK', '5', '42', '50', '59', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK9', 'TLFCASDAK', '5', '42', '51', '59', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR11', 'RLRDLLLIVTR', '5', '42', '770', '780', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR14(gp41)', 'SYHRLRDLLLIVTR', '5', '42', '767', '780', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR11', 'RLRDLLLIVTR', '5', '42', '770', '780', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RW9', 'RIKQIINMW', '5', '42', '419', '427', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9(gp41)', 'ERYLKDQQL', '5', '42', '584', '592', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VH20', 'VLSIVNRVRQGYSPLSFQTH', '5', '42', '701', '720', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TF17', 'TVYYGVPVWKEAKTTLF', '5', '42', '37', '53', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TVYYGVPVMK', '5', '42', '37', '46', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9(gp41)', 'IVTRIVELL', '5', '42', '777', '785', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('gp41 SV10', 'SLLNATDIAV', '5', '42', '813', '822', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK11', 'VTVYYGVPVWK', '5', '42', '36', '46', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9', 'ERYLKDQQL', '5', '42', '584', '592', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SF9', 'SFNCGGEFF', '5', '42', '375', '383', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VT20', 'VLSIVNQVRRQGYSPLSFQT', '5', '42', '701', '719', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TA25', 'TEKLWVTVYYGVPVWKEATTTLFCA', '5', '42', '31', '55', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1283', 'TVYYGVPVWK', '5', '42', '37', '46', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PF14', 'PSSGGDLEITTHSF', '5', '42', '363', '376', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY9', 'AENLWVTVY', '5', '42', '31', '39', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YW9', 'YETEVHNVW', '5', '42', '61', '69', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY11', 'AAENLWVTVYY', '5', '42', '30', '40', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY9(gp120)', 'AENLWVTVY', '5', '42', '31', '39', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL9', 'DPNPQEVVL', '5', '42', '78', '86', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LPCRIKQII', '5', '42', '416', '424', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RI9', 'RAYRAILHI', '5', '42', '835', '843', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PK20', 'PIPIHYCAPAGFAILKCNNK', '5', '42', '212', '231', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GV15', 'GIWGCSGKLICTTAV', '5', '42', '594', '608', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GK9', 'GRRGWEALK', '5', '42', '786', '794', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TTVPWNVSW', '5', '42', '606', '614', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Gag ND32', 'NPPIPVGEIYKRWIILGLNKIVRMYSPTSILD', '5', '38', '253', '284', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSEELRSLY', '5', '38', '71', '79', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QS10', 'QLQPSLQTGS', '5', '38', '63', '72', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TV9', 'TLNAWVKVV', '5', '38', '151', '159', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GE11', 'GHQAAMQMLKE', '5', '38', '193', '203', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HR17', 'HPVHAGPIAPGQMREPR', '5', '38', '216', '232', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SM10', 'STLQEQIGWM', '5', '38', '241', '250', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MV9', 'MTNNPPIPV', '5', '38', '250', '258', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YVDRFYKTL', '5', '38', '296', '304', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV9', 'VLAEAMSQV', '5', '38', '362', '370', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SQVTNSATI', '5', '38', '368', '376', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FLGKIWPSHK', '5', '38', '434', '443', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ND32', 'NPPIPVGEIYKRWIILGLNKIVRMYSPTSILD', '5', '38', '253', '284', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EF10', 'EPFRDYVDRF', '5', '38', '291', '300', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('E9V', 'EMMTACQGV', '5', '38', '345', '353', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AA9', 'ATLEEMMTA', '5', '38', '341', '349', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SH20', 'SNFKGNKRMVKCFNCGKEGH', '5', '38', '381', '400', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FLGKIWPSHK', '5', '38', '433', '442', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK9', 'KIRLRPGGK', '5', '38', '18', '26', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IK10', 'IAKNCRAPRK', '5', '38', '401', '410', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY10', 'RLRPGGKKKY', '5', '38', '20', '29', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CR9', 'CGKEGHIAR', '5', '38', '395', '403', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK10', 'LARNCRAPRK', '5', '38', '401', '410', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A*3101 KR9', 'KIWPSYKGR', '5', '38', '436', '444', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A68-QV9', 'QVSQNYPIV', '5', '38', '127', '135', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV18', 'LKDTINEEAAEWDRLHPV', '5', '38', '201', '218', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DA9', 'DRFYKTLRA', '5', '38', '298', '306', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DLNTMLNTV', '5', '38', '183', '191', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VF9 (p24)', 'VKVIEEKAF', '5', '38', '156', '32', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9(24)', 'GHQAAMQML', '5', '38', '193', '201', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WP15', 'WIILGLNKIVRMYSP', '5', '38', '265', '279', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GLNKIVRMY', '5', '38', '269', '277', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-YL9(p24)', 'YVDRFFKTL', '5', '38', '296', '304', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KALGPAATL', '5', '38', '335', '343', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL10', 'VHQAISPRTL', '5', '38', '143', '152', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HL9', 'HQAISPRTL', '5', '38', '144', '152', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ISPRTLNAW', '5', '38', '147', '155', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FRDYVDRFYK', '5', '38', '293', '302', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TPQDLNTML', '5', '38', '180', '188', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9(p24)', 'GHQAAMQML', '5', '38', '193', '201', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HA9(p24)', 'HPVHAGPIA', '5', '38', '216', '224', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NL13', 'NANPDCKTILRAL', '5', '38', '324', '337', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SP15', 'SGGELDRWEKIRLRP', '5', '38', '9', '23', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR15', 'SLYNTVATLYCVHQR', '5', '38', '77', '91', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM15', 'KVVEEKAFSPEVIPM', '5', '38', '157', '171', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV9(p24)', 'EEKAFSPEV', '5', '38', '160', '168', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ID15', 'IPMFSALSEGATPQD', '5', '38', '169', '183', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SM15', 'SALSEGATPQDLNTM', '5', '38', '173', '187', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL10', 'LSEGATPQDL', '5', '38', '175', '184', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI15', 'AAEWDRVHPVHAGPI', '5', '38', '209', '223', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NI15', 'NPPIPVGEIYKRWII', '5', '38', '253', '267', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FE15', 'FRDYVDRFYKTLRAE', '5', '38', '293', '307', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL11', 'RDYVDRFYKTL', '5', '38', '294', '304', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RE15', 'RAEQASQEVKNWMTE', '5', '38', '305', '319', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW11(p24)', 'AEQASQEVKNW', '5', '38', '306', '316', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QEPIDKELY', '5', '38', '476', '484', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY-9', 'LYNTVATLY', '5', '38', '78', '86', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ET20', 'EPFRDYVDRFFKTLRAEQAT', '5', '38', '291', '310', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL15', 'VQNANPDCKTILKAL', '5', '38', '323', '337', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NI9', 'NANPDSKTI', '5', '38', '325', '333', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK15', 'KIRLRPGGKKKYKLK', '5', '38', '18', '32', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF-11', 'LVWASRELERF', '5', '38', '34', '44', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSEELRSLY', '5', '38', '71', '79', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RSLYNTVATLY', '5', '38', '76', '86', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK9', 'KTQQAAADK', '5', '38', '114', '122', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GP10', 'GQMVHQAISP', '5', '38', '140', '149', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW10', 'AISPRTLNAW', '5', '38', '146', '155', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ISPRTLNAW', '5', '38', '147', '155', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NF20', 'NAWVKVVEEKAFSPEVIPMF', '5', '38', '153', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GAG-KI8', 'KAFSPEVI', '5', '38', '162', '169', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF11', 'KAFSPEVIPMF', '5', '38', '162', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSPEVIPMF', '5', '38', '164', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV15', 'EGATPQDLNTMLNTV', '5', '38', '177', '191', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TINEEAAEW', '5', '38', '204', '212', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW10', 'TSTLQEQIGW', '5', '38', '240', '249', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VQ15', 'VDRFYKTLRAEQASQ', '5', '38', '297', '311', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YT20', 'YKTLRAEQASQEVKNWMTET', '5', '38', '301', '320', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW9', 'QASQEVKNW', '5', '38', '308', '316', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '5', '107', '241', '249', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase AR9', 'AVFIHNFKR', '5', '107', '179', '187', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAMASDFNL', '5', '107', '20', '28', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LR28', 'LLWKGEGAV', '5', '107', '241', '249', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL9', 'QVRDQAEHL', '5', '107', '164', '172', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IK11', 'ILKLAGRWPVK', '5', '107', '101', '111', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QK10', 'QMAVFIHNFK', '5', '107', '177', '186', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AR9', 'AVFIHNFKR', '5', '107', '179', '187', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK10', 'AVFIHNFKRK', '5', '107', '179', '188', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1264', 'AVFIHNFKRK', '5', '107', '179', '188', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PR18', 'PAETGQETAYFILKLAGR', '5', '107', '90', '107', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9', 'ETAYFILKL', '5', '107', '96', '104', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9(Integrase)', 'THLEGKIIL', '5', '107', '66', '74', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY9(Integrase)', 'IQQEFGIPY', '5', '107', '135', '143', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FY10(Integrase)', 'FKRKGGIGGY', '5', '107', '185', '194', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-RY9(Int)', 'RKAKIIRDY', '5', '107', '263', '271', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY8', 'KQEFGIPY', '5', '107', '136', '143', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY10', 'TKIQNFRVYY', '5', '107', '218', '227', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW11', 'QEEHEKYHSNW', '5', '107', '9', '19', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW10', 'EEHEKYHSNW', '5', '107', '10', '19', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY10', 'AETGQETAYY', '5', '107', '91', '100', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LPPVVAKEI', '5', '107', '28', '36', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SW9', 'STTVKAACW', '5', '107', '123', '131', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SW10', 'STTVKAACWW', '5', '107', '123', '132', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KTAVQMAVF', '5', '107', '173', '181', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Nef AL9', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GVGAVSRDL', '5', '43', '29', '37', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL10', 'VLEWRFDSRL', '5', '43', '180', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AFHHVAREL', '5', '43', '190', '198', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AA9', 'ALTSSNTAA', '5', '43', '42', '50', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ML9', 'MTYKAALDL', '5', '43', '79', '97', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('P10L', 'PLTFGWCFKL', '5', '43', '136', '145', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QK10', 'QVPLRPMTYK', '5', '43', '73', '82', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GAFDLSFFL', '5', '43', '83', '91', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AVDLSHFLK', '5', '43', '84', '92', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK9', 'DLSHFLKEK', '5', '43', '86', '94', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR10', 'SSLAFRHVAR', '5', '43', '187', '196', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A68-AL(Nef)', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9(Nef)', 'RMRRAEPAA', '5', '43', '19', '27', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-TY11(Nef)', 'TQGYFPDWQNY', '5', '43', '117', '127', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FT9', 'FFPDWKNYT', '5', '43', '120', '128', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-WF9(Nef)', 'WRFDSRLAF', '5', '43', '183', '191', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WF9', 'EVLQWKFDSRLALRH', '5', '43', '179', '193', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VM15', 'VLVWKFDSRLAFRHM', '5', '43', '180', '194', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LA15', 'LVWKFDSHLAFHHMA', '5', '43', '181', '195', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VR15', 'VWRFDSHLAFRHMAR', '5', '43', '182', '196', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WE15', 'WRFDSRLAFHHMARE', '5', '43', '183', '197', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RRQDILDLWVY', '5', '43', '105', '115', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QDILDLWIY', '5', '43', '107', '115', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GP16', 'GVRYPLTFGWCYKLVP', '5', '43', '132', '147', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RYP', 'RYPLTFGWCYK', '5', '43', '134', '144', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YPLTFGWCY', '5', '43', '135', '143', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KEKGGLEGL', '5', '43', '92', '100', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY11', 'KRQEILDLWVY', '5', '43', '105', '115', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RPQVPLRPMTY', '5', '43', '71', '81', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PY10', 'PQVPLRPMTY', '5', '43', '72', '81', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FT9', 'FFPDWKNYT', '5', '43', '120', '128', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY20', 'WKFDSRLAFHHMARELHPEY', '5', '43', '183', '202', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DSRLAFHHV', '5', '43', '186', '194', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AFHHVAREK', '5', '43', '190', '198', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KAAFDLSFF', '5', '43', '82', '90', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HTQGYFPDW', '5', '43', '116', '124', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HQ10', 'HTQGYFPDWQ', '5', '43', '116', '125', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY8', 'YFPDWQNY', '5', '43', '120', '127', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTPGPGIRY', '5', '43', '127', '135', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF14', 'GPGVRYPLTFGWCY', '5', '43', '130', '143', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV16', 'VRYPLTFGWCYKLVPV', '5', '43', '133', '148', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AAFDLSFFL', '5', '43', '83', '91', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YT9', 'YFPDWQNYT', '5', '43', '120', '128', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SPIETVPVKL', '5', '94', '158', '167', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '5', '94', '956', '964', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase AR9', 'AVFIHNFKR', '5', '94', '894', '902', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PW9', 'PTRRELQVW', '5', '94', '26', '34', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FSFPQITLW', '5', '94', '54', '62', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SPIETVPVKL', '5', '105', '3', '12', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL10', 'SPIETVPVKL', '5', '105', '3', '12', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AM9', 'ALVEICTEM', '5', '105', '33', '41', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV11', 'VLDVGDAYFSV', '5', '105', '108', '118', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL9', 'VIYQYMDDL', '5', '105', '179', '187', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YV9', 'YQYMDDLYV', '5', '105', '181', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK12', 'LLRWGLTTPDKK', '5', '105', '209', '220', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9', 'ILKEPVHGV', '5', '105', '309', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AV9', 'ALQDSGLEV', '5', '105', '485', '493', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV10', 'IYQYMDDLYV', '5', '105', '180', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KA9', 'KLVGKLNWA', '5', '105', '259', '267', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV10', 'EILKEPVGHV', '5', '105', '308', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PL9', 'PLVKLWYQL', '5', '105', '421', '429', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9', 'ILKEPVHGV', '5', '105', '309', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL17', 'EKDSWTVNDIQKLVGKL', '5', '105', '248', '264', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK16', 'TDSQYALGIIQAQPDK', '5', '105', '497', '512', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AIFQSSMTK', '5', '105', '158', '166', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QR9', 'QIYPGIKVR', '5', '105', '269', '277', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK11', 'ALVEICTEMEK', '5', '105', '33', '43', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NK9', 'NTPVFAIKK', '5', '105', '57', '65', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GK9', 'GIPHPAGLK', '5', '105', '93', '101', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MR9', 'MTKILEPFR', '5', '105', '164', '172', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK11', 'RMRGAHTNDVK', '5', '105', '356', '366', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Pol-KA9', 'KVYLAWVPA', '5', '105', '530', '538', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK11', 'KVYLAWVPAHK', '5', '105', '530', '540', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A32-PW1-(RT)', 'PIQKETWETW', '5', '105', '392', '401', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1274', 'NTPVFAIKKK', '5', '105', '57', '66', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AIFQSSMTK', '5', '105', '158', '166', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1267', 'FTTPDKKHQK', '5', '105', '214', '223', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GA10(RT)', 'GAETFYVDGA', '5', '105', '436', '445', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PR18', 'PYNTPVFAIKKKDSTKWR', '5', '105', '55', '72', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK18', 'FWEVQLGIPHPAGLKKKK', '5', '105', '87', '104', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DVKQLTEVV', '5', '105', '354', '372', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IS14', 'IVGAETFYVDGAAS', '5', '105', '434', '447', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL8', 'IRYQYNVL', '5', '105', '142', '149', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VTDSQYALGI', '5', '105', '496', '505', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-LY12(RT)', 'LVGKLNWASQIY', '5', '105', '260', '271', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY10(RT)', 'ILKEPVHGVY', '5', '105', '309', '318', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10(RT)', 'VTDSQYALGI', '5', '105', '496', '505', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IPLTEEAEL', '5', '105', '293', '301', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY9', 'KQNPDIVIY', '5', '105', '173', '181', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY10', 'NETPGIRYQY', '5', '105', '137', '146', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY9', 'NPEIVIYQY', '5', '105', '175', '183', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL18', 'VSLTETTNQKTELQAIQL', '5', '105', '467', '484', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY9', 'NNETPGVRY', '5', '105', '136', '144', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL10', 'TELQAIQLAL', '5', '105', '477', '486', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PM16', 'PISPIETVPVKLKPGM', '5', '105', '1', '16', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI11', 'LPQGWKGSPAI', '5', '105', '149', '159', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL17', 'QDSGSEVNIVTDSQYAL', '5', '105', '487', '503', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI15', 'EVNIVTDSQYALGII', '5', '105', '492', '506', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL16', 'ALGIIQAQPDKSESEL', '5', '105', '502', '517', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER9', 'EELRQHLLR', '5', '105', '203', '211', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW10', 'EELRQHLLRW', '5', '105', '203', '212', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW10', 'TWETWWTEYW', '5', '105', '397', '406', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SEVNIVTDSQY', '5', '105', '491', '501', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI9', 'EKEGKISKI', '5', '105', '42', '50', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NM10', 'NPDIVIYQYM', '5', '105', '175', '184', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EF9', 'EPIVGAETF', '5', '105', '432', '440', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL8', 'DAYFSVPL', '5', '105', '113', '120', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QGWKGSPAI', '5', '105', '151', '159', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IPLTEEAEL', '5', '105', '293', '301', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LRWGFCTPDKK', '5', '105', '210', '220', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PIV', 'PIVLPEKDSW', '5', '105', '243', '252', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'IVLPEKDSW', '5', '105', '244', '252', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KW10', 'KITTESIVIW', '5', '105', '374', '383', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KW9', 'KLPIWKETW', '5', '105', '390', '398', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QF10', 'QATWIPEWEF', '5', '105', '407', '416', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSVPLDEDF', '5', '105', '116', '124', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QRPLVTIKI', '5', '104', '7', '15', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KI10', 'KMIGGIGGFI', '5', '104', '45', '54', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LVGPTPVNI', '5', '104', '76', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('L10V', 'LLDTGADDTV', '5', '104', '23', '32', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VLVGPTPVNI', '5', '104', '75', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK10', 'VTIKIGGQLK', '5', '104', '11', '20', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9(Protease)', 'ITLWQRPLV', '5', '104', '3', '11', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL9', 'DTVLEEMNL', '5', '104', '30', '38', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GKKAIGTVL', '5', '104', '68', '76', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B*1501 TF9', 'TQIGCTLNF', '5', '104', '91', '99', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW9', 'EEMNLPGRW', '5', '104', '34', '42', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IG10', 'IEICGHKAIG', '5', '104', '64', '73', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW9', 'EEMNLPGRW', '5', '104', '34', '42', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IG10', 'IEICGHKAIG', '5', '104', '64', '73', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QG10', 'QRPLVTVKIG', '5', '104', '7', '16', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV8', 'KAIGTVLV', '5', '104', '70', '77', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Rev LL9', 'LQLPPLERL', '5', '40', '73', '81', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY9', 'ISERILSTY', '5', '40', '55', '63', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LQLPPLERL', '5', '40', '73', '81', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'ILVESPAVL', '5', '40', '102', '110', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY9', 'TVRLIKFLY', '5', '40', '15', '23', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER10', 'ERILSTYLGR', '5', '40', '57', '66', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR9', 'RILSTYLGR', '5', '40', '58', '66', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1277', 'PTVLESGTKE', '5', '40', '107', '116', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IHSISERIL', '5', '40', '52', '60', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL17', 'ILSTCLGRPAEPVPLQL', '5', '40', '59', '75', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY10', 'KTGRLIKLLY', '5', '40', '14', '23', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LRAVRIIKI', '5', '40', '13', '21', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1279', 'TACNNCYCKK', '5', '39', '20', '29', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IR11', 'ITKGLGISYGR', '5', '39', '39', '49', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-FY10(Tat)', 'FQTKGLGISY', '5', '39', '38', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VCFTTKGLGI', '5', '39', '36', '45', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Tat MY9', 'MTKGLGISY', '5', '39', '39', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY8', 'TKGLGISY', '5', '39', '40', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PW9', 'PVDPRLEPW', '5', '39', '3', '11', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK10', 'RIRTWKSLVK', '5', '44', '17', '26', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HK9', 'HMYISKKAK', '5', '44', '28', '36', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK11', 'KTKPPLPSVKK', '5', '44', '158', '168', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER10', 'EVHIPLGEAR', '5', '44', '54', '63', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LA18', 'LIHMHYFDCFADSAIRKA', '5', '44', '106', '123', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI8', 'WHLGHVSI', '5', '44', '79', '87', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RI17', 'RHHYESRHPKVSSEVHI', '5', '44', '41', '57', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SF13', 'SQ/KRASGQFY/F', '5', '44', '32', '40', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL18', 'VSIEWRLRRYSTQVDPGL', '5', '44', '85', '102', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LADQLIHLHY', '5', '44', '102', '111', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II10', 'IPLGDAKLII', '5', '44', '57', '66', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B57-IF9', 'ISKKAKGWF', '5', '44', '31', '39', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW9', 'VTKLTEDRW', '5', '44', '166', '174', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW18', 'LQTGERDWHLGHGVSIEW', '5', '44', '72', '89', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'AIIRILQQL', '5', '45', '59', '67', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AIIRILQQL', '5', '45', '59', '67', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Vpr 62', 'RILQQLLFI', '5', '45', '62', '70', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DR11', 'DTWAGVEAIIR', '5', '45', '52', '65', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV10', 'ETYGDTWTGV', '5', '45', '48', '57', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI9', 'EAVRHFPRI', '5', '45', '29', '37', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW9', 'AVRHFPRIW', '5', '45', '30', '38', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL17', 'STMVDMGHLRLLDVNDL', '5', '41', '66', '82', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '3', '28', '858', '866', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '3', '28', '858', '866', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '3', '20', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b/c', 'RRRLTARGLL', '3', '29', '245', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'ARRHRILDIYL', '3', '29', '136', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '3', '29', '103', '111', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '3', '21', '591', '598', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '3', '21', '50', '60', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '3', '21', '1007', '1015', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Rev LL9', 'LQLPPLERL', '3', '26', '73', '81', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '3', '22', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '3', '24', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '3', '23', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '1', '8', '788', '795', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '1', '8', '620', '628', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL8', 'CAPPGYAL', '1', '8', '233', '240', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '1', '8', '620', '628', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ST10', 'SSPPSYFQQT', '1', '8', '726', '735', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTIISLNKY', '1', '8', '296', '304', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM9', 'KTVLPVTIM', '1', '8', '317', '325', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QTIVKHPRY', '1', '8', '359', '367', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF10', 'GTSRNKRGVF', '1', '8', '519', '528', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY9', 'SSWPWQIEY', '1', '8', '760', '768', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '1', '8', '788', '795', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GI8', 'GDYKLVEI', '1', '8', '495', '502', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF11', 'LRCNDTNYSGF', '1', '8', '241', '251', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LRTELTYLQY', '1', '8', '816', '825', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FHEAVQAVW', '1', '8', '830', '838', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '1', '8', '573', '581', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '1', '8', '524', '532', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '1', '8', '717', '725', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '1', '8', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '1', '8', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '1', '8', '817', '825', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '1', '8', '233', '241', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '1', '1', '181', '189', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '1', '1', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '1', '1', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '1', '1', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '1', '1', '71', '79', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '1', '1', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '1', '1', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW9', 'LSPRTLNAW', '1', '1', '149', '157', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QNPIPVGNI', '1', '1', '254', '262', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF8', 'LAPVPIPF', '1', '1', '372', '379', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '1', '1', '71', '79', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SEGCTPYDI', '1', '1', '178', '186', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '1', '1', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLDKGLSSLSC', '1', '9', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '1', '9', '103', '111', 'Mafa-A1*06301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LLRARGETY', '1', '9', '20', '28', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TM10', 'TMSYKLAIDM', '1', '9', '110', '119', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTSGPGIRY', '1', '9', '159', '167', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KTFGWLWKL', '1', '9', '169', '177', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTYEAYVRY', '1', '9', '221', '229', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LM9', 'LTARGLLNM', '1', '9', '248', '256', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KI9', 'KEKGGLEGI', '1', '9', '124', '132', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'IRYPKTFGW', '1', '9', '165', '173', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MW9', 'MHPAQTSQW', '1', '9', '195', '203', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW9', 'QTSQWDDPW', '1', '9', '199', '207', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'RRHRILDIYL', '1', '9', '137', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9-2', 'RRLTARGLL', '1', '9', '246', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b', 'RRLTARGLL', '1', '9', '246', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9c', 'RRRLTARGL', '1', '9', '245', '253', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b/c', 'RRRLTARGLL', '1', '9', '245', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'ARRHRILDIYL', '1', '9', '136', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '1', '9', '103', '111', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '1', '2', '1001', '1011', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV10', 'LGPHYTPKIV', '1', '2', '147', '156', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QV9', 'QVPKFHLPV', '1', '2', '592', '600', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9', 'STPPLVRLV', '1', '2', '625', '633', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9-2', 'SGPKANIIV', '1', '2', '696', '704', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSIPLDEEF', '1', '2', '324', '332', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LSQEQEGCY', '1', '2', '518', '526', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL8', 'YHSNVKEL', '1', '2', '782', '789', 'Mamu-A1*00701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AERKQREAL', '1', '2', '92', '100', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI11', 'AEAEYEENKII', '1', '2', '507', '517', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MF8', 'MRHVLEPF', '1', '2', '372', '379', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FQWMGYELW', '1', '2', '435', '443', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW10', 'VWEQWWTDYW', '1', '2', '604', '613', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '1', '2', '592', '599', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '1', '2', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '1', '2', '1008', '1016', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRLRLIHLL', '1', '7', '12', '20', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRRWQQLL', '1', '7', '44', '51', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '1', '6', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA8', 'QLYRPLEA', '1', '6', '42', '49', 'Mafa-B*5101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'STPESANL', '1', '6', '28', '35', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '1', '3', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPNYADI', '1', '3', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '1', '3', '97', '104', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '1', '3', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPNYADILLHS', '1', '3', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA9', 'QVPSLQYLA', '1', '3', '144', '152', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ITWYSKNFW', '1', '3', '89', '97', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '1', '3', '97', '104', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY10', 'YADILLHSTY', '1', '3', '104', '113', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HFKVGWAWW', '1', '3', '44', '52', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW8', 'HLEVQGYW', '1', '3', '66', '73', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CY9', 'CRFPRAHKY', '1', '3', '135', '143', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '1', '3', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRDNRRGL', '1', '3', '172', '179', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '1', '3', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCIHSRIGQPGG', '1', '5', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RILQRALFM', '1', '5', '63', '71', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'REPWDEWVV', '1', '5', '13', '21', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '1', '5', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '1', '4', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '1', '4', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II11', 'IPPGNSGEETI', '1', '4', '8', '18', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '1', '4', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL8', 'CAPPGYAL', '13', '82', '233', '240', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '13', '82', '620', '628', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ST10', 'SSPPSYFQQT', '13', '82', '726', '735', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTIISLNKY', '13', '82', '296', '304', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM9', 'KTVLPVTIM', '13', '82', '317', '325', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QTIVKHPRY', '13', '82', '359', '367', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF10', 'GTSRNKRGVF', '13', '82', '519', '528', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY9', 'SSWPWQIEY', '13', '82', '760', '768', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '13', '82', '788', '795', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GI8', 'GDYKLVEI', '13', '82', '495', '502', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF11', 'LRCNDTNYSGF', '13', '82', '241', '251', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LRTELTYLQY', '13', '82', '816', '825', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FHEAVQAVW', '13', '82', '830', '838', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '13', '82', '573', '581', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '13', '82', '524', '532', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '13', '82', '717', '725', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '13', '82', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '13', '82', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '13', '82', '817', '825', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '13', '82', '233', '241', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '13', '75', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '13', '75', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '13', '75', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '13', '75', '181', '189', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '13', '75', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '13', '75', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW9', 'LSPRTLNAW', '13', '75', '149', '157', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QNPIPVGNI', '13', '75', '254', '262', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF8', 'LAPVPIPF', '13', '75', '372', '379', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '13', '75', '71', '79', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SEGCTPYDI', '13', '75', '178', '186', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '13', '75', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '13', '75', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLDKGLSSLSC', '13', '83', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LLRARGETY', '13', '83', '20', '28', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRSRPSGDL', '13', '83', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '13', '83', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '13', '76', '1001', '1011', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV10', 'LGPHYTPKIV', '13', '76', '147', '156', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QV9', 'QVPKFHLPV', '13', '76', '592', '600', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9', 'STPPLVRLV', '13', '76', '625', '633', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9-2', 'SGPKANIIV', '13', '76', '696', '704', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSIPLDEEF', '13', '76', '324', '332', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LSQEQEGCY', '13', '76', '518', '526', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL8', 'YHSNVKEL', '13', '76', '782', '789', 'Mamu-A1*00701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AERKQREAL', '13', '76', '92', '100', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI11', 'AEAEYEENKII', '13', '76', '507', '517', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MF8', 'MRHVLEPF', '13', '76', '372', '379', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FQWMGYELW', '13', '76', '435', '443', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW10', 'VWEQWWTDYW', '13', '76', '604', '613', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '13', '76', '592', '599', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '13', '76', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '13', '76', '1008', '1016', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRLRLIHLL', '13', '81', '12', '20', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRRWQQLL', '13', '81', '44', '51', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '13', '80', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA8', 'QLYRPLEA', '13', '80', '42', '49', 'Mafa-B*5101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'STPESANL', '13', '80', '28', '35', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPNYADI', '13', '77', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '13', '77', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPNYADILLHS', '13', '77', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '13', '77', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA9', 'QVPSLQYLA', '13', '77', '144', '152', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ITWYSKNFW', '13', '77', '89', '97', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '13', '77', '97', '104', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY10', 'YADILLHSTY', '13', '77', '104', '113', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HFKVGWAWW', '13', '77', '44', '52', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW8', 'HLEVQGYW', '13', '77', '66', '73', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CY9', 'CRFPRAHKY', '13', '77', '135', '143', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '13', '77', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRDNRRGL', '13', '77', '172', '179', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '13', '77', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCIHSRIGQPGG', '13', '79', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RILQRALFM', '13', '79', '63', '71', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'REPWDEWVV', '13', '79', '13', '21', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '13', '79', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '13', '78', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '13', '78', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II11', 'IPPGNSGEETI', '13', '78', '8', '18', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '13', '78', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRAY', '2', '37', '790', '797', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '2', '37', '622', '630', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '2', '37', '575', '583', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '2', '37', '526', '534', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '2', '37', '719', '727', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '2', '37', '870', '878', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '2', '37', '870', '878', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '2', '37', '819', '827', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '2', '37', '235', '243', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '2', '10', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '2', '10', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '2', '10', '71', '79', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '2', '10', '181', '189', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '2', '10', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '2', '10', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '2', '10', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '2', '10', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLGKGLSSRSC', '2', '36', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '2', '30', '997', '1007', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '2', '30', '588', '595', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '2', '30', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '2', '30', '1004', '1012', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'TTPESANL', '2', '34', '28', '35', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '2', '34', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '2', '31', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPDY', '2', '31', '97', '104', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPDYADI', '2', '31', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '2', '31', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPDYADILLHS', '2', '31', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '2', '31', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCNHSRIGQPGG', '2', '33', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '2', '33', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '2', '32', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AE11', 'AFEWLNRTVEE', '2', '32', '21', '31', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '2', '32', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '2', '32', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '12', '74', '581', '589', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '12', '74', '532', '540', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '12', '74', '725', '733', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '12', '74', '238', '246', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '12', '67', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '12', '68', '970', '978', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '12', '70', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); - -/* SequenceAnalysis-11.32-11.33.sql */ - -CREATE TABLE sequenceanalysis.aligners ( - RowId INT IDENTITY(1,1) NOT NULL, - - name varchar(100) not null, - displayname varchar(100), - description text, - jsonconfig text, - - Created DATETIME, - Modified DATETIME, - - CONSTRAINT PK_aligners PRIMARY KEY (rowId) -); - -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bowtie', 'Bowtie', 'Bowtie is a fast aligner often used for short reads. Disadvantages are that it does not perform gapped alignment. It will return a single hit for each read.', '[{"name": "bowtie.max_seed_mismatches","fieldLabel": "Max Seed Mismatches","value": 3},{"name": "bowtie.seed_length","fieldLabel": "Seed Length","value": 20}]'); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('lastz', 'Lastz', 'Lastz has performed well for both sequence-based genotyping and viral analysis. ', '[{"name": "lastz.identity","fieldLabel": "Min Pct Identity","renderData": {"helpPopup": "The minimum percent identity required per alignment for that match to be included"},"value": 98},{"name": "lastz.continuity","fieldLabel": "Percent Continuity","renderData": {"helpPopup": "Continuity is the percentage of alignment columns that are not gaps. Alignment blocks outside the given range are discarded."},"value": 90}]'); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa', 'BWA', 'BWA is a commonly used aligner, optimized for shorter reads. It also supports paired-end reads.', ''); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa-sw', 'BWA-SW', 'BWA-SW uses a different algorithm than BWA that is better suited for longer reads. By design it will only return a single hit for each read. It it currently recommended for viral analysis and other applications that align longer reads, but do not require retaining multiple hits.', ''); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('mosaik', 'Mosaik', 'Mosaik is suitable for longer reads and has the option to retain multiple hits per read. The only downside is that it can be slower. When this pipeline was first written, this aligner was preferred for sequence-based genotyping and similar applications which require retaining multiple hits. It supports paired end reads. The aligner is still good; however, Lastz also seems to perform well for SBT.', '[{"name":"mosaik.output_multiple","fieldLabel":"Retain All Hits","xtype":"checkbox","renderData":{"helpPopup":"If selected, all hits above thresholds will be reported. If not, only a single hit will be retained."},"checked":true},{"name":"mosaik.max_mismatch_pct","fieldLabel":"Max Mismatch Pct","renderData":{"helpPopup":"The maximum percent of bases allowed to mismatch per alignment. Note: Ns are counted as mismatches"},"value":0.02,"minValue":0,"maxValue":1},{"name":"mosaik.hash_size","fieldLabel":"Hash Size","renderData":{"helpPopup":"The hash size used in alignment (see Mosaik documentation). A large value is preferred for sequences expected to be highly similar to the reference"},"minValue":0,"value":32},{"name":"mosaik.max_hash_positions","fieldLabel":"Max Hash Positions","renderData":{"helpPopup":"The maximum number of hash matches that are passed to local alignment."},"minValue":0,"value":200},{"name":"mosaik.align_threshold","fieldLabel":"Alignment Threshold","renderData":{"helpPopup":"The alignment score required for an alignment to continue to local alignment. Because the latter is slow, a higher value can improve speed."},"value":55}]'); - -/* SequenceAnalysis-11.33-11.34.sql */ - -delete from sequenceanalysis.ref_aa_sequences where (select name from sequenceanalysis.ref_nt_sequences n where n.rowid = ref_aa_sequences.ref_nt_id) = 'SIVmac239cy0163'; -delete from sequenceanalysis.ref_nt_sequences where name = 'SIVmac239cy0163'; -delete from sequenceanalysis.virus_strains where virus_strain = 'SIVmac239cy0163'; - -alter table sequenceanalysis.sequence_readsets - add machine_run_id varchar(200); - -alter table sequenceanalysis.sequence_readsets - add fileid2 integer; - -alter table sequenceanalysis.sequence_readsets - add raw_input_file2 integer; - -alter table sequenceanalysis.sequence_readsets - add qc_file2 integer; - -alter table sequenceanalysis.sequence_analyses - add inputfile2 integer; - -delete from sequenceanalysis.aligners where name = 'bwa'; -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa', 'BWA', 'BWA is a commonly used aligner, optimized for shorter reads. It also supports paired-end reads.', '[{"xtype":"hidden","name":"pairedEnd","value":"true"}]'); - -delete from sequenceanalysis.aligners where name = 'mosaik'; -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('mosaik', 'Mosaik', 'Mosaik is suitable for longer reads and has the option to retain multiple hits per read. The only downside is that it can be slower. When this pipeline was first written, this aligner was preferred for sequence-based genotyping and similar applications which require retaining multiple hits. It supports paired end reads. The aligner is still good; however, Lastz also seems to perform well for SBT.', '[{"xtype":"hidden","name":"pairedEnd","value":"true"},{"name":"mosaik.output_multiple","fieldLabel":"Retain All Hits","xtype":"checkbox","renderData":{"helpPopup":"If selected, all hits above thresholds will be reported. If not, only a single hit will be retained."},"checked":true},{"name":"mosaik.max_mismatch_pct","fieldLabel":"Max Mismatch Pct","renderData":{"helpPopup":"The maximum percent of bases allowed to mismatch per alignment. Note: Ns are counted as mismatches"},"value":0.02,"minValue":0,"maxValue":1},{"name":"mosaik.hash_size","fieldLabel":"Hash Size","renderData":{"helpPopup":"The hash size used in alignment (see Mosaik documentation). A large value is preferred for sequences expected to be highly similar to the reference"},"minValue":0,"value":32},{"name":"mosaik.max_hash_positions","fieldLabel":"Max Hash Positions","renderData":{"helpPopup":"The maximum number of hash matches that are passed to local alignment."},"minValue":0,"value":200},{"name":"mosaik.align_threshold","fieldLabel":"Alignment Threshold","renderData":{"helpPopup":"The alignment score required for an alignment to continue to local alignment. Because the latter is slow, a higher value can improve speed."},"value":55}]'); \ No newline at end of file diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.31-11.32.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.31-11.32.sql deleted file mode 100644 index 3ded209b6..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.31-11.32.sql +++ /dev/null @@ -1,661 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -update sequenceanalysis.ref_aa_features set category = 'Protein Domain' where "name" in ( -'p17 Matrix', -'p24 Capsid', -'p2', -'p7 Nucleocapsid', -'p1', -'p6', -'Gag-Pol Fusion TF protein', -'Protease', -'p66 RT', -'RNAse H', -'Integrase', -'gp120', -'gp41', -'Signal', -'C1', -'V1', -'V2', -'C2', -'V3', -'C3', -'V4', -'C4', -'V5', -'C5', -'gp120', -'gp41' -); - ---add epitopes -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '4', '16', '581', '589', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '4', '16', '532', '540', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '4', '16', '725', '733', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '4', '16', '236', '244', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '4', '11', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '4', '12', '967', '975', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '4', '15', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '4', '14', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Env KV9', 'KLTSCNTSV', '5', '42', '192', '200', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PY9', 'PIDNDTTSY', '5', '42', '183', '191', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RRGWEVLKY', '5', '42', '787', '795', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV10', 'VPTDPNPPEV', '5', '42', '75', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KLTPLCVTL', '5', '42', '121', '129', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV9', 'KLTSCNTSV', '5', '42', '192', '200', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RT10', 'RGPGRAFYTT', '5', '42', '311', '320', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV10', 'SLLNATAIAV', '5', '42', '813', '822', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV10', 'KLWVTVYYGV', '5', '42', '33', '42', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV9', 'LWVTVYYGV', '5', '42', '34', '42', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL9', 'QMHEDIISL', '5', '42', '103', '111', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IISLWDQSL', '5', '42', '108', '116', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('P18', 'RIQRGPGRAFVTIGK', '5', '42', '308', '322', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TLSQIVTKL', '5', '42', '341', '349', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI9', 'WLWYIKIFI', '5', '42', '678', '686', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FV9', 'FIMIVGGLV', '5', '42', '685', '693', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'RLRDLLLIV', '5', '42', '770', '778', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LLQYWSQEL', '5', '42', '799', '807', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV9', 'LLNATAIAV', '5', '42', '814', '822', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9', 'RVIEVLQRA', '5', '42', '828', '836', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL17', 'RLVSGFLALAWDDLRSL', '5', '42', '747', '763', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9', 'RIRQGLERA', '5', '42', '846', '854', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TVYYGVPVW', '5', '42', '37', '45', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK11', 'VTVYYGVPVWK', '5', '42', '36', '46', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TVYYGVPVWK', '5', '42', '37', '46', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TTLFCASDAK', '5', '42', '50', '59', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK9', 'TLFCASDAK', '5', '42', '51', '59', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR11', 'RLRDLLLIVTR', '5', '42', '770', '780', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR14(gp41)', 'SYHRLRDLLLIVTR', '5', '42', '767', '780', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR11', 'RLRDLLLIVTR', '5', '42', '770', '780', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RW9', 'RIKQIINMW', '5', '42', '419', '427', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9(gp41)', 'ERYLKDQQL', '5', '42', '584', '592', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VH20', 'VLSIVNRVRQGYSPLSFQTH', '5', '42', '701', '720', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TF17', 'TVYYGVPVWKEAKTTLF', '5', '42', '37', '53', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK10', 'TVYYGVPVMK', '5', '42', '37', '46', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9(gp41)', 'IVTRIVELL', '5', '42', '777', '785', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('gp41 SV10', 'SLLNATDIAV', '5', '42', '813', '822', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK11', 'VTVYYGVPVWK', '5', '42', '36', '46', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9', 'ERYLKDQQL', '5', '42', '584', '592', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SF9', 'SFNCGGEFF', '5', '42', '375', '383', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VT20', 'VLSIVNQVRRQGYSPLSFQT', '5', '42', '701', '719', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TA25', 'TEKLWVTVYYGVPVWKEATTTLFCA', '5', '42', '31', '55', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1283', 'TVYYGVPVWK', '5', '42', '37', '46', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PF14', 'PSSGGDLEITTHSF', '5', '42', '363', '376', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY9', 'AENLWVTVY', '5', '42', '31', '39', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YW9', 'YETEVHNVW', '5', '42', '61', '69', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY11', 'AAENLWVTVYY', '5', '42', '30', '40', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY9(gp120)', 'AENLWVTVY', '5', '42', '31', '39', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL9', 'DPNPQEVVL', '5', '42', '78', '86', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LPCRIKQII', '5', '42', '416', '424', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RI9', 'RAYRAILHI', '5', '42', '835', '843', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PK20', 'PIPIHYCAPAGFAILKCNNK', '5', '42', '212', '231', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAIEAQQHL', '5', '42', '557', '565', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GV15', 'GIWGCSGKLICTTAV', '5', '42', '594', '608', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GK9', 'GRRGWEALK', '5', '42', '786', '794', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TTVPWNVSW', '5', '42', '606', '614', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Gag ND32', 'NPPIPVGEIYKRWIILGLNKIVRMYSPTSILD', '5', '38', '253', '284', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSEELRSLY', '5', '38', '71', '79', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QS10', 'QLQPSLQTGS', '5', '38', '63', '72', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TV9', 'TLNAWVKVV', '5', '38', '151', '159', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GE11', 'GHQAAMQMLKE', '5', '38', '193', '203', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HR17', 'HPVHAGPIAPGQMREPR', '5', '38', '216', '232', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SM10', 'STLQEQIGWM', '5', '38', '241', '250', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MV9', 'MTNNPPIPV', '5', '38', '250', '258', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YVDRFYKTL', '5', '38', '296', '304', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV9', 'VLAEAMSQV', '5', '38', '362', '370', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SQVTNSATI', '5', '38', '368', '376', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FLGKIWPSHK', '5', '38', '434', '443', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ND32', 'NPPIPVGEIYKRWIILGLNKIVRMYSPTSILD', '5', '38', '253', '284', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EF10', 'EPFRDYVDRF', '5', '38', '291', '300', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('E9V', 'EMMTACQGV', '5', '38', '345', '353', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AA9', 'ATLEEMMTA', '5', '38', '341', '349', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SH20', 'SNFKGNKRMVKCFNCGKEGH', '5', '38', '381', '400', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FLGKIWPSHK', '5', '38', '433', '442', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK9', 'KIRLRPGGK', '5', '38', '18', '26', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IK10', 'IAKNCRAPRK', '5', '38', '401', '410', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY10', 'RLRPGGKKKY', '5', '38', '20', '29', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CR9', 'CGKEGHIAR', '5', '38', '395', '403', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK10', 'LARNCRAPRK', '5', '38', '401', '410', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A*3101 KR9', 'KIWPSYKGR', '5', '38', '436', '444', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK9', 'RLRPGGKKK', '5', '38', '20', '28', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SLYNTVATL', '5', '38', '77', '85', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A68-QV9', 'QVSQNYPIV', '5', '38', '127', '135', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV18', 'LKDTINEEAAEWDRLHPV', '5', '38', '201', '218', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DA9', 'DRFYKTLRA', '5', '38', '298', '306', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DLNTMLNTV', '5', '38', '183', '191', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VF9 (p24)', 'VKVIEEKAF', '5', '38', '156', '32', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9(24)', 'GHQAAMQML', '5', '38', '193', '201', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WP15', 'WIILGLNKIVRMYSP', '5', '38', '265', '279', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GLNKIVRMY', '5', '38', '269', '277', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-YL9(p24)', 'YVDRFFKTL', '5', '38', '296', '304', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KALGPAATL', '5', '38', '335', '343', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL10', 'VHQAISPRTL', '5', '38', '143', '152', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HL9', 'HQAISPRTL', '5', '38', '144', '152', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ISPRTLNAW', '5', '38', '147', '155', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK10', 'FRDYVDRFYK', '5', '38', '293', '302', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TPQDLNTML', '5', '38', '180', '188', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9(p24)', 'GHQAAMQML', '5', '38', '193', '201', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HA9(p24)', 'HPVHAGPIA', '5', '38', '216', '224', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NL13', 'NANPDCKTILRAL', '5', '38', '324', '337', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SP15', 'SGGELDRWEKIRLRP', '5', '38', '9', '23', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR15', 'SLYNTVATLYCVHQR', '5', '38', '77', '91', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM15', 'KVVEEKAFSPEVIPM', '5', '38', '157', '171', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV9(p24)', 'EEKAFSPEV', '5', '38', '160', '168', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ID15', 'IPMFSALSEGATPQD', '5', '38', '169', '183', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SM15', 'SALSEGATPQDLNTM', '5', '38', '173', '187', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL10', 'LSEGATPQDL', '5', '38', '175', '184', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI15', 'AAEWDRVHPVHAGPI', '5', '38', '209', '223', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NI15', 'NPPIPVGEIYKRWII', '5', '38', '253', '267', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FE15', 'FRDYVDRFYKTLRAE', '5', '38', '293', '307', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL11', 'RDYVDRFYKTL', '5', '38', '294', '304', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RE15', 'RAEQASQEVKNWMTE', '5', '38', '305', '319', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW11(p24)', 'AEQASQEVKNW', '5', '38', '306', '316', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QEPIDKELY', '5', '38', '476', '484', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY-9', 'LYNTVATLY', '5', '38', '78', '86', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ET20', 'EPFRDYVDRFFKTLRAEQAT', '5', '38', '291', '310', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL15', 'VQNANPDCKTILKAL', '5', '38', '323', '337', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NI9', 'NANPDSKTI', '5', '38', '325', '333', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK15', 'KIRLRPGGKKKYKLK', '5', '38', '18', '32', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF-11', 'LVWASRELERF', '5', '38', '34', '44', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSEELRSLY', '5', '38', '71', '79', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RSLYNTVATLY', '5', '38', '76', '86', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK9', 'KTQQAAADK', '5', '38', '114', '122', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GP10', 'GQMVHQAISP', '5', '38', '140', '149', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW10', 'AISPRTLNAW', '5', '38', '146', '155', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ISPRTLNAW', '5', '38', '147', '155', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NF20', 'NAWVKVVEEKAFSPEVIPMF', '5', '38', '153', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GAG-KI8', 'KAFSPEVI', '5', '38', '162', '169', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF11', 'KAFSPEVIPMF', '5', '38', '162', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSPEVIPMF', '5', '38', '164', '172', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV15', 'EGATPQDLNTMLNTV', '5', '38', '177', '191', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW9', 'TINEEAAEW', '5', '38', '204', '212', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW10', 'TSTLQEQIGW', '5', '38', '240', '249', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VQ15', 'VDRFYKTLRAEQASQ', '5', '38', '297', '311', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YT20', 'YKTLRAEQASQEVKNWMTET', '5', '38', '301', '320', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW9', 'QASQEVKNW', '5', '38', '308', '316', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '5', '107', '241', '249', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase AR9', 'AVFIHNFKR', '5', '107', '179', '187', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RAMASDFNL', '5', '107', '20', '28', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LR28', 'LLWKGEGAV', '5', '107', '241', '249', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL9', 'QVRDQAEHL', '5', '107', '164', '172', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IK11', 'ILKLAGRWPVK', '5', '107', '101', '111', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QK10', 'QMAVFIHNFK', '5', '107', '177', '186', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AR9', 'AVFIHNFKR', '5', '107', '179', '187', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK10', 'AVFIHNFKRK', '5', '107', '179', '188', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1264', 'AVFIHNFKRK', '5', '107', '179', '188', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PR18', 'PAETGQETAYFILKLAGR', '5', '107', '90', '107', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL9', 'ETAYFILKL', '5', '107', '96', '104', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9(Integrase)', 'THLEGKIIL', '5', '107', '66', '74', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY9(Integrase)', 'IQQEFGIPY', '5', '107', '135', '143', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FY10(Integrase)', 'FKRKGGIGGY', '5', '107', '185', '194', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-RY9(Int)', 'RKAKIIRDY', '5', '107', '263', '271', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY8', 'KQEFGIPY', '5', '107', '136', '143', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY10', 'TKIQNFRVYY', '5', '107', '218', '227', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW11', 'QEEHEKYHSNW', '5', '107', '9', '19', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW10', 'EEHEKYHSNW', '5', '107', '10', '19', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AY10', 'AETGQETAYY', '5', '107', '91', '100', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LPPVVAKEI', '5', '107', '28', '36', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SW9', 'STTVKAACW', '5', '107', '123', '131', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SW10', 'STTVKAACWW', '5', '107', '123', '132', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KTAVQMAVF', '5', '107', '173', '181', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Nef AL9', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GVGAVSRDL', '5', '43', '29', '37', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL10', 'VLEWRFDSRL', '5', '43', '180', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AFHHVAREL', '5', '43', '190', '198', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AA9', 'ALTSSNTAA', '5', '43', '42', '50', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ML9', 'MTYKAALDL', '5', '43', '79', '97', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('P10L', 'PLTFGWCFKL', '5', '43', '136', '145', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QK10', 'QVPLRPMTYK', '5', '43', '73', '82', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GAFDLSFFL', '5', '43', '83', '91', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AVDLSHFLK', '5', '43', '84', '92', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK9', 'DLSHFLKEK', '5', '43', '86', '94', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SR10', 'SSLAFRHVAR', '5', '43', '187', '196', 'HLA-A*31', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A68-AL(Nef)', 'AAVDLSHFL', '5', '43', '83', '91', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RA9(Nef)', 'RMRRAEPAA', '5', '43', '19', '27', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-TY11(Nef)', 'TQGYFPDWQNY', '5', '43', '117', '127', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FT9', 'FFPDWKNYT', '5', '43', '120', '128', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-WF9(Nef)', 'WRFDSRLAF', '5', '43', '183', '191', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WF9', 'EVLQWKFDSRLALRH', '5', '43', '179', '193', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VM15', 'VLVWKFDSRLAFRHM', '5', '43', '180', '194', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LA15', 'LVWKFDSHLAFHHMA', '5', '43', '181', '195', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VR15', 'VWRFDSHLAFRHMAR', '5', '43', '182', '196', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WE15', 'WRFDSRLAFHHMARE', '5', '43', '183', '197', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RRQDILDLWVY', '5', '43', '105', '115', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QDILDLWIY', '5', '43', '107', '115', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GP16', 'GVRYPLTFGWCYKLVP', '5', '43', '132', '147', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RYP', 'RYPLTFGWCYK', '5', '43', '134', '144', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YPLTFGWCY', '5', '43', '135', '143', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KEKGGLEGL', '5', '43', '92', '100', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY11', 'KRQEILDLWVY', '5', '43', '105', '115', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY11', 'RPQVPLRPMTY', '5', '43', '71', '81', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PY10', 'PQVPLRPMTY', '5', '43', '72', '81', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FT9', 'FFPDWKNYT', '5', '43', '120', '128', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY20', 'WKFDSRLAFHHMARELHPEY', '5', '43', '183', '202', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DSRLAFHHV', '5', '43', '186', '194', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AFHHVAREK', '5', '43', '190', '198', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KAAFDLSFF', '5', '43', '82', '90', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HTQGYFPDW', '5', '43', '116', '124', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HQ10', 'HTQGYFPDWQ', '5', '43', '116', '125', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY8', 'YFPDWQNY', '5', '43', '120', '127', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTPGPGIRY', '5', '43', '127', '135', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF14', 'GPGVRYPLTFGWCY', '5', '43', '130', '143', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV16', 'VRYPLTFGWCYKLVPV', '5', '43', '133', '148', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LTFGWCFKL', '5', '43', '137', '145', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AAFDLSFFL', '5', '43', '83', '91', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YT9', 'YFPDWQNYT', '5', '43', '120', '128', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SPIETVPVKL', '5', '94', '158', '167', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '5', '94', '956', '964', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase AR9', 'AVFIHNFKR', '5', '94', '894', '902', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PW9', 'PTRRELQVW', '5', '94', '26', '34', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FSFPQITLW', '5', '94', '54', '62', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'SPIETVPVKL', '5', '105', '3', '12', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL10', 'SPIETVPVKL', '5', '105', '3', '12', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AM9', 'ALVEICTEM', '5', '105', '33', '41', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VV11', 'VLDVGDAYFSV', '5', '105', '108', '118', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL9', 'VIYQYMDDL', '5', '105', '179', '187', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YV9', 'YQYMDDLYV', '5', '105', '181', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK12', 'LLRWGLTTPDKK', '5', '105', '209', '220', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9', 'ILKEPVHGV', '5', '105', '309', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AV9', 'ALQDSGLEV', '5', '105', '485', '493', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV10', 'IYQYMDDLYV', '5', '105', '180', '189', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KA9', 'KLVGKLNWA', '5', '105', '259', '267', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV10', 'EILKEPVGHV', '5', '105', '308', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PL9', 'PLVKLWYQL', '5', '105', '421', '429', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9', 'ILKEPVHGV', '5', '105', '309', '317', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EL17', 'EKDSWTVNDIQKLVGKL', '5', '105', '248', '264', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TK16', 'TDSQYALGIIQAQPDK', '5', '105', '497', '512', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AIFQSSMTK', '5', '105', '158', '166', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QR9', 'QIYPGIKVR', '5', '105', '269', '277', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK11', 'ALVEICTEMEK', '5', '105', '33', '43', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NK9', 'NTPVFAIKK', '5', '105', '57', '65', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GK9', 'GIPHPAGLK', '5', '105', '93', '101', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MR9', 'MTKILEPFR', '5', '105', '164', '172', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK11', 'RMRGAHTNDVK', '5', '105', '356', '366', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Pol-KA9', 'KVYLAWVPA', '5', '105', '530', '538', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK11', 'KVYLAWVPAHK', '5', '105', '530', '540', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('A32-PW1-(RT)', 'PIQKETWETW', '5', '105', '392', '401', 'HLA-A*32', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1274', 'NTPVFAIKKK', '5', '105', '57', '66', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AK9', 'AIFQSSMTK', '5', '105', '158', '166', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1267', 'FTTPDKKHQK', '5', '105', '214', '223', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GA10(RT)', 'GAETFYVDGA', '5', '105', '436', '445', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PR18', 'PYNTPVFAIKKKDSTKWR', '5', '105', '55', '72', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FK18', 'FWEVQLGIPHPAGLKKKK', '5', '105', '87', '104', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DV9', 'DVKQLTEVV', '5', '105', '354', '372', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IS14', 'IVGAETFYVDGAAS', '5', '105', '434', '447', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL8', 'IRYQYNVL', '5', '105', '142', '149', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VTDSQYALGI', '5', '105', '496', '505', 'HLA-B*14', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-LY12(RT)', 'LVGKLNWASQIY', '5', '105', '260', '271', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY10(RT)', 'ILKEPVHGVY', '5', '105', '309', '318', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10(RT)', 'VTDSQYALGI', '5', '105', '496', '505', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IPLTEEAEL', '5', '105', '293', '301', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY9', 'KQNPDIVIY', '5', '105', '173', '181', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY10', 'NETPGIRYQY', '5', '105', '137', '146', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY9', 'NPEIVIYQY', '5', '105', '175', '183', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL18', 'VSLTETTNQKTELQAIQL', '5', '105', '467', '484', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NY9', 'NNETPGVRY', '5', '105', '136', '144', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL10', 'TELQAIQLAL', '5', '105', '477', '486', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PM16', 'PISPIETVPVKLKPGM', '5', '105', '1', '16', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI11', 'LPQGWKGSPAI', '5', '105', '149', '159', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QL17', 'QDSGSEVNIVTDSQYAL', '5', '105', '487', '503', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI15', 'EVNIVTDSQYALGII', '5', '105', '492', '506', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL16', 'ALGIIQAQPDKSESEL', '5', '105', '502', '517', 'HLA-B*39', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER9', 'EELRQHLLR', '5', '105', '203', '211', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW10', 'EELRQHLLRW', '5', '105', '203', '212', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TW10', 'TWETWWTEYW', '5', '105', '397', '406', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SEVNIVTDSQY', '5', '105', '491', '501', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI9', 'EKEGKISKI', '5', '105', '42', '50', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('NM10', 'NPDIVIYQYM', '5', '105', '175', '184', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EF9', 'EPIVGAETF', '5', '105', '432', '440', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL8', 'DAYFSVPL', '5', '105', '113', '120', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TI8', 'TAFTIPSI', '5', '105', '128', '135', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QGWKGSPAI', '5', '105', '151', '159', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IPLTEEAEL', '5', '105', '293', '301', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LRWGFCTPDKK', '5', '105', '210', '220', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PIV', 'PIVLPEKDSW', '5', '105', '243', '252', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'IVLPEKDSW', '5', '105', '244', '252', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KW10', 'KITTESIVIW', '5', '105', '374', '383', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KW9', 'KLPIWKETW', '5', '105', '390', '398', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QF10', 'QATWIPEWEF', '5', '105', '407', '416', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSVPLDEDF', '5', '105', '116', '124', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QRPLVTIKI', '5', '104', '7', '15', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KI10', 'KMIGGIGGFI', '5', '104', '45', '54', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LVGPTPVNI', '5', '104', '76', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('L10V', 'LLDTGADDTV', '5', '104', '23', '32', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VLVGPTPVNI', '5', '104', '75', '84', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VK10', 'VTIKIGGQLK', '5', '104', '11', '20', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IV9(Protease)', 'ITLWQRPLV', '5', '104', '3', '11', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DL9', 'DTVLEEMNL', '5', '104', '30', '38', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL9', 'GKKAIGTVL', '5', '104', '68', '76', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B*1501 TF9', 'TQIGCTLNF', '5', '104', '91', '99', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW9', 'EEMNLPGRW', '5', '104', '34', '42', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IG10', 'IEICGHKAIG', '5', '104', '64', '73', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EW9', 'EEMNLPGRW', '5', '104', '34', '42', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IG10', 'IEICGHKAIG', '5', '104', '64', '73', 'HLA-B*44', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QG10', 'QRPLVTVKIG', '5', '104', '7', '16', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KV8', 'KAIGTVLV', '5', '104', '70', '77', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Rev LL9', 'LQLPPLERL', '5', '40', '73', '81', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IY9', 'ISERILSTY', '5', '40', '55', '63', 'HLA-A*01', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL9', 'LQLPPLERL', '5', '40', '73', '81', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'ILVESPAVL', '5', '40', '102', '110', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY9', 'TVRLIKFLY', '5', '40', '15', '23', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER10', 'ERILSTYLGR', '5', '40', '57', '66', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RR9', 'RILSTYLGR', '5', '40', '58', '66', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1277', 'PTVLESGTKE', '5', '40', '107', '116', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL9', 'IHSISERIL', '5', '40', '52', '60', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IL17', 'ILSTCLGRPAEPVPLQL', '5', '40', '59', '75', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KY10', 'KTGRLIKLLY', '5', '40', '14', '23', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LI9', 'LRAVRIIKI', '5', '40', '13', '21', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('1279', 'TACNNCYCKK', '5', '39', '20', '29', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IR11', 'ITKGLGISYGR', '5', '39', '39', '49', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B15-FY10(Tat)', 'FQTKGLGISY', '5', '39', '38', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI10', 'VCFTTKGLGI', '5', '39', '36', '45', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Tat MY9', 'MTKGLGISY', '5', '39', '39', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TY8', 'TKGLGISY', '5', '39', '40', '47', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('PW9', 'PVDPRLEPW', '5', '39', '3', '11', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RK10', 'RIRTWKSLVK', '5', '44', '17', '26', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HK9', 'HMYISKKAK', '5', '44', '28', '36', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KK11', 'KTKPPLPSVKK', '5', '44', '158', '168', 'HLA-A*03', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ER10', 'EVHIPLGEAR', '5', '44', '54', '63', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LA18', 'LIHMHYFDCFADSAIRKA', '5', '44', '106', '123', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI8', 'WHLGHVSI', '5', '44', '79', '87', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RI17', 'RHHYESRHPKVSSEVHI', '5', '44', '41', '57', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SF13', 'SQ/KRASGQFY/F', '5', '44', '32', '40', 'HLA-B*15', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VL18', 'VSIEWRLRRYSTQVDPGL', '5', '44', '85', '102', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LADQLIHLHY', '5', '44', '102', '111', 'HLA-B*18', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II10', 'IPLGDAKLII', '5', '44', '57', '66', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('B57-IF9', 'ISKKAKGWF', '5', '44', '31', '39', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW9', 'VTKLTEDRW', '5', '44', '166', '174', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW18', 'LQTGERDWHLGHGVSIEW', '5', '44', '72', '89', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL9', 'AIIRILQQL', '5', '45', '59', '67', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AIIRILQQL', '5', '45', '59', '67', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Vpr 62', 'RILQQLLFI', '5', '45', '62', '70', 'HLA-A*02', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DR11', 'DTWAGVEAIIR', '5', '45', '52', '65', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EV10', 'ETYGDTWTGV', '5', '45', '48', '57', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EI9', 'EAVRHFPRI', '5', '45', '29', '37', 'HLA-B*51', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AW9', 'AVRHFPRIW', '5', '45', '30', '38', 'HLA-B*57', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL17', 'STMVDMGHLRLLDVNDL', '5', '41', '66', '82', 'HLA-A*68', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '3', '28', '858', '866', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '3', '28', '858', '866', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '3', '20', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '3', '20', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '3', '29', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b/c', 'RRRLTARGLL', '3', '29', '245', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'ARRHRILDIYL', '3', '29', '136', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '3', '29', '103', '111', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '3', '21', '591', '598', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '3', '21', '50', '60', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '3', '21', '1007', '1015', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Rev LL9', 'LQLPPLERL', '3', '26', '73', '81', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '3', '22', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '3', '24', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '3', '23', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '1', '8', '788', '795', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '1', '8', '620', '628', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL8', 'CAPPGYAL', '1', '8', '233', '240', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '1', '8', '620', '628', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ST10', 'SSPPSYFQQT', '1', '8', '726', '735', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTIISLNKY', '1', '8', '296', '304', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM9', 'KTVLPVTIM', '1', '8', '317', '325', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QTIVKHPRY', '1', '8', '359', '367', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF10', 'GTSRNKRGVF', '1', '8', '519', '528', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY9', 'SSWPWQIEY', '1', '8', '760', '768', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '1', '8', '788', '795', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GI8', 'GDYKLVEI', '1', '8', '495', '502', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF11', 'LRCNDTNYSGF', '1', '8', '241', '251', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LRTELTYLQY', '1', '8', '816', '825', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FHEAVQAVW', '1', '8', '830', '838', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '1', '8', '573', '581', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '1', '8', '524', '532', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '1', '8', '717', '725', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '1', '8', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '1', '8', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '1', '8', '817', '825', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '1', '8', '233', '241', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '1', '1', '181', '189', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '1', '1', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '1', '1', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '1', '1', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '1', '1', '71', '79', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '1', '1', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '1', '1', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW9', 'LSPRTLNAW', '1', '1', '149', '157', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QNPIPVGNI', '1', '1', '254', '262', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF8', 'LAPVPIPF', '1', '1', '372', '379', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '1', '1', '71', '79', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SEGCTPYDI', '1', '1', '178', '186', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '1', '1', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '1', '1', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLDKGLSSLSC', '1', '9', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '1', '9', '103', '111', 'Mafa-A1*06301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LLRARGETY', '1', '9', '20', '28', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TM10', 'TMSYKLAIDM', '1', '9', '110', '119', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTSGPGIRY', '1', '9', '159', '167', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KTFGWLWKL', '1', '9', '169', '177', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY9', 'YTYEAYVRY', '1', '9', '221', '229', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LM9', 'LTARGLLNM', '1', '9', '248', '256', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KI9', 'KEKGGLEGI', '1', '9', '124', '132', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'IRYPKTFGW', '1', '9', '165', '173', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MW9', 'MHPAQTSQW', '1', '9', '195', '203', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QW9', 'QTSQWDDPW', '1', '9', '199', '207', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'RRHRILDIYL', '1', '9', '137', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9-2', 'RRLTARGLL', '1', '9', '246', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b', 'RRLTARGLL', '1', '9', '246', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9c', 'RRRLTARGL', '1', '9', '245', '253', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9b/c', 'RRRLTARGLL', '1', '9', '245', '254', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '1', '9', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL10', 'ARRHRILDIYL', '1', '9', '136', '146', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RPKVPLRTM', '1', '9', '103', '111', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '1', '2', '1001', '1011', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV10', 'LGPHYTPKIV', '1', '2', '147', '156', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QV9', 'QVPKFHLPV', '1', '2', '592', '600', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9', 'STPPLVRLV', '1', '2', '625', '633', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9-2', 'SGPKANIIV', '1', '2', '696', '704', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSIPLDEEF', '1', '2', '324', '332', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LSQEQEGCY', '1', '2', '518', '526', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL8', 'YHSNVKEL', '1', '2', '782', '789', 'Mamu-A1*00701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AERKQREAL', '1', '2', '92', '100', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI11', 'AEAEYEENKII', '1', '2', '507', '517', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MF8', 'MRHVLEPF', '1', '2', '372', '379', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FQWMGYELW', '1', '2', '435', '443', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW10', 'VWEQWWTDYW', '1', '2', '604', '613', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '1', '2', '592', '599', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '1', '2', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '1', '2', '1008', '1016', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRLRLIHLL', '1', '7', '12', '20', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRRWQQLL', '1', '7', '44', '51', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '1', '6', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA8', 'QLYRPLEA', '1', '6', '42', '49', 'Mafa-B*5101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'STPESANL', '1', '6', '28', '35', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '1', '3', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPNYADI', '1', '3', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '1', '3', '97', '104', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '1', '3', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPNYADILLHS', '1', '3', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA9', 'QVPSLQYLA', '1', '3', '144', '152', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ITWYSKNFW', '1', '3', '89', '97', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '1', '3', '97', '104', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY10', 'YADILLHSTY', '1', '3', '104', '113', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HFKVGWAWW', '1', '3', '44', '52', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW8', 'HLEVQGYW', '1', '3', '66', '73', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CY9', 'CRFPRAHKY', '1', '3', '135', '143', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '1', '3', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRDNRRGL', '1', '3', '172', '179', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '1', '3', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCIHSRIGQPGG', '1', '5', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RILQRALFM', '1', '5', '63', '71', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'REPWDEWVV', '1', '5', '13', '21', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '1', '5', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '1', '4', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '1', '4', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II11', 'IPPGNSGEETI', '1', '4', '8', '18', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '1', '4', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL8', 'CAPPGYAL', '13', '82', '233', '240', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '13', '82', '620', '628', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('ST10', 'SSPPSYFQQT', '13', '82', '726', '735', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTIISLNKY', '13', '82', '296', '304', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KM9', 'KTVLPVTIM', '13', '82', '317', '325', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QY9', 'QTIVKHPRY', '13', '82', '359', '367', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GF10', 'GTSRNKRGVF', '13', '82', '519', '528', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY9', 'SSWPWQIEY', '13', '82', '760', '768', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRVY', '13', '82', '788', '795', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GI8', 'GDYKLVEI', '13', '82', '495', '502', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF11', 'LRCNDTNYSGF', '13', '82', '241', '251', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY10', 'LRTELTYLQY', '13', '82', '816', '825', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FHEAVQAVW', '13', '82', '830', '838', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '13', '82', '573', '581', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '13', '82', '524', '532', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '13', '82', '717', '725', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '13', '82', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '13', '82', '868', '876', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '13', '82', '817', '825', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '13', '82', '233', '241', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '13', '75', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '13', '75', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '13', '75', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '13', '75', '181', '189', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '13', '75', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '13', '75', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LW9', 'LSPRTLNAW', '13', '75', '149', '157', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QI9', 'QNPIPVGNI', '13', '75', '254', '262', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF8', 'LAPVPIPF', '13', '75', '372', '379', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '13', '75', '71', '79', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SI9', 'SEGCTPYDI', '13', '75', '178', '186', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '13', '75', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '13', '75', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLDKGLSSLSC', '13', '83', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LLRARGETY', '13', '83', '20', '28', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRSRPSGDL', '13', '83', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9a', 'RRSRPSGDL', '13', '83', '8', '16', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '13', '76', '1001', '1011', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LV10', 'LGPHYTPKIV', '13', '76', '147', '156', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QV9', 'QVPKFHLPV', '13', '76', '592', '600', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9', 'STPPLVRLV', '13', '76', '625', '633', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SV9-2', 'SGPKANIIV', '13', '76', '696', '704', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FF9', 'FSIPLDEEF', '13', '76', '324', '332', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LY9', 'LSQEQEGCY', '13', '76', '518', '526', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL8', 'YHSNVKEL', '13', '76', '782', '789', 'Mamu-A1*00701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AL9', 'AERKQREAL', '13', '76', '92', '100', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AI11', 'AEAEYEENKII', '13', '76', '507', '517', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MF8', 'MRHVLEPF', '13', '76', '372', '379', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FW9', 'FQWMGYELW', '13', '76', '435', '443', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VW10', 'VWEQWWTDYW', '13', '76', '604', '613', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '13', '76', '592', '599', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '13', '76', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '13', '76', '1008', '1016', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRLRLIHLL', '13', '81', '12', '20', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRRWQQLL', '13', '81', '44', '51', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '13', '80', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA8', 'QLYRPLEA', '13', '80', '42', '49', 'Mafa-B*5101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'STPESANL', '13', '80', '28', '35', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPNYADI', '13', '77', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '13', '77', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPNYADILLHS', '13', '77', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '13', '77', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QA9', 'QVPSLQYLA', '13', '77', '144', '152', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IW9', 'ITWYSKNFW', '13', '77', '89', '97', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPNY', '13', '77', '97', '104', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YY10', 'YADILLHSTY', '13', '77', '104', '113', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW9', 'HFKVGWAWW', '13', '77', '44', '52', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('HW8', 'HLEVQGYW', '13', '77', '66', '73', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CY9', 'CRFPRAHKY', '13', '77', '135', '143', 'Mamu-B*01701', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '13', '77', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL8', 'RRDNRRGL', '13', '77', '172', '179', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '13', '77', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCIHSRIGQPGG', '13', '79', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RM9', 'RILQRALFM', '13', '79', '63', '71', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RV9', 'REPWDEWVV', '13', '79', '13', '21', 'Mamu-A1*01101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '13', '79', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '13', '78', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '13', '78', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('II11', 'IPPGNSGEETI', '13', '78', '8', '18', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '13', '78', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY8', 'RTLLSRAY', '2', '37', '790', '797', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TL9', 'TVPWPNASL', '2', '37', '622', '630', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '2', '37', '575', '583', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '2', '37', '526', '534', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '2', '37', '719', '727', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '2', '37', '870', '878', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRIRQGLEL', '2', '37', '870', '878', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RY9', 'RTELTYLQY', '2', '37', '819', '827', 'Mamu-A1*00201', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '2', '37', '235', '243', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GN15', 'GKKKYMLKHVVWAAN', '2', '10', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL11', 'LDRFGLAESLL', '2', '10', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GY9', 'GSENLKSLY', '2', '10', '71', '79', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CM9', 'CTPYDINQM', '2', '10', '181', '189', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('MI15', 'MLNCVGDHQAAMQII', '2', '10', '189', '203', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SN15', 'SSVDEQIQWMYRQQN', '2', '10', '241', '255', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('DK15', 'DRQAGFLGLGPWGKK', '2', '10', '429', '443', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*08001', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '2', '10', '263', '271', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GW9', 'GPRKPIKCW', '2', '10', '386', '394', 'Mafa-A1*0630301', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GC11', 'GLGKGLSSRSC', '2', '36', '45', '55', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LK11', 'LWKGPGELLWK', '2', '30', '997', '1007', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('QP8', 'QVPKFHLP', '2', '30', '588', '595', 'Mafa-A4*0101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('EA11', 'EAPQFPHGSSA', '2', '30', '51', '61', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '2', '30', '1004', '1012', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SL8', 'TTPESANL', '2', '34', '28', '35', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('SY11', 'SQLYRPLEACY', '2', '34', '41', '51', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LL15', 'LQEGSHLEVQGYWHL', '2', '31', '61', '75', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WY8', 'WTDVTPDY', '2', '31', '97', '104', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('WI11', 'WTDVTPDYADI', '2', '31', '97', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('VI8', 'VTPDYADI', '2', '31', '100', '107', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TS11', 'TPDYADILLHS', '2', '31', '101', '111', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('RL9', 'RRAIRGEQL', '2', '31', '123', '131', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('FG15', 'FRGGCNHSRIGQPGG', '2', '33', '73', '87', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('IF9', 'IRILQRALF', '2', '33', '62', '70', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('TR11', 'TIGEAFEWLNR', '2', '32', '17', '27', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('AE11', 'AFEWLNRTVEE', '2', '32', '21', '31', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LH15', 'LNRTVEEINREAVNH', '2', '32', '25', '39', '', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '2', '32', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KL9', 'KRQQELLRL', '12', '74', '581', '589', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('KF9', 'KRGVFVLGF', '12', '74', '532', '540', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('LF9', 'LRQGYRPVF', '12', '74', '725', '733', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('CL9', 'CAPPGYALL', '12', '74', '238', '246', 'Mamu-A1*00101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('YL9', 'YRRWIQLGL', '12', '67', '264', '272', 'Mamu-B*00801', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('Integrase LV9', 'LLWKGEGAV', '12', '68', '970', '978', 'HLA-A*02010101', 'CTL Epitope'); -INSERT INTO sequenceanalysis.ref_aa_features (name,aa_sequence,ref_nt_id,ref_aa_id,aa_start,aa_stop,comment,category) VALUES ('GL10', 'GPPPPPPPGL', '12', '70', '102', '111', 'Mamu-A1*00101', 'CTL Epitope'); - diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.32-11.33.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.32-11.33.sql deleted file mode 100644 index 642ba8f1e..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.32-11.33.sql +++ /dev/null @@ -1,40 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -CREATE TABLE sequenceanalysis.aligners ( - RowId INT IDENTITY(1,1) NOT NULL, - - name varchar(100) not null, - displayname varchar(100), - description text, - jsonconfig text, - - Created DATETIME, - Modified DATETIME, - - CONSTRAINT PK_aligners PRIMARY KEY (rowId) -); - -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bowtie', 'Bowtie', 'Bowtie is a fast aligner often used for short reads. Disadvantages are that it does not perform gapped alignment. It will return a single hit for each read.', '[{"name": "bowtie.max_seed_mismatches","fieldLabel": "Max Seed Mismatches","value": 3},{"name": "bowtie.seed_length","fieldLabel": "Seed Length","value": 20}]'); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('lastz', 'Lastz', 'Lastz has performed well for both sequence-based genotyping and viral analysis. ', '[{"name": "lastz.identity","fieldLabel": "Min Pct Identity","renderData": {"helpPopup": "The minimum percent identity required per alignment for that match to be included"},"value": 98},{"name": "lastz.continuity","fieldLabel": "Percent Continuity","renderData": {"helpPopup": "Continuity is the percentage of alignment columns that are not gaps. Alignment blocks outside the given range are discarded."},"value": 90}]'); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa', 'BWA', 'BWA is a commonly used aligner, optimized for shorter reads. It also supports paired-end reads.', ''); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa-sw', 'BWA-SW', 'BWA-SW uses a different algorithm than BWA that is better suited for longer reads. By design it will only return a single hit for each read. It it currently recommended for viral analysis and other applications that align longer reads, but do not require retaining multiple hits.', ''); -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('mosaik', 'Mosaik', 'Mosaik is suitable for longer reads and has the option to retain multiple hits per read. The only downside is that it can be slower. When this pipeline was first written, this aligner was preferred for sequence-based genotyping and similar applications which require retaining multiple hits. It supports paired end reads. The aligner is still good; however, Lastz also seems to perform well for SBT.', '[{"name":"mosaik.output_multiple","fieldLabel":"Retain All Hits","xtype":"checkbox","renderData":{"helpPopup":"If selected, all hits above thresholds will be reported. If not, only a single hit will be retained."},"checked":true},{"name":"mosaik.max_mismatch_pct","fieldLabel":"Max Mismatch Pct","renderData":{"helpPopup":"The maximum percent of bases allowed to mismatch per alignment. Note: Ns are counted as mismatches"},"value":0.02,"minValue":0,"maxValue":1},{"name":"mosaik.hash_size","fieldLabel":"Hash Size","renderData":{"helpPopup":"The hash size used in alignment (see Mosaik documentation). A large value is preferred for sequences expected to be highly similar to the reference"},"minValue":0,"value":32},{"name":"mosaik.max_hash_positions","fieldLabel":"Max Hash Positions","renderData":{"helpPopup":"The maximum number of hash matches that are passed to local alignment."},"minValue":0,"value":200},{"name":"mosaik.align_threshold","fieldLabel":"Alignment Threshold","renderData":{"helpPopup":"The alignment score required for an alignment to continue to local alignment. Because the latter is slow, a higher value can improve speed."},"value":55}]'); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.33-11.34.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.33-11.34.sql deleted file mode 100644 index b6ceab8a4..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-11.33-11.34.sql +++ /dev/null @@ -1,42 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -delete from sequenceanalysis.ref_aa_sequences where (select name from sequenceanalysis.ref_nt_sequences n where n.rowid = ref_aa_sequences.ref_nt_id) = 'SIVmac239cy0163'; -delete from sequenceanalysis.ref_nt_sequences where name = 'SIVmac239cy0163'; -delete from sequenceanalysis.virus_strains where virus_strain = 'SIVmac239cy0163'; - -alter table sequenceanalysis.sequence_readsets - add machine_run_id varchar(200); - -alter table sequenceanalysis.sequence_readsets - add fileid2 integer; - -alter table sequenceanalysis.sequence_readsets - add raw_input_file2 integer; - -alter table sequenceanalysis.sequence_readsets - add qc_file2 integer; - -alter table sequenceanalysis.sequence_analyses - add inputfile2 integer; - -delete from sequenceanalysis.aligners where name = 'bwa'; -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('bwa', 'BWA', 'BWA is a commonly used aligner, optimized for shorter reads. It also supports paired-end reads.', '[{"xtype":"hidden","name":"pairedEnd","value":"true"}]'); - -delete from sequenceanalysis.aligners where name = 'mosaik'; -insert into sequenceanalysis.aligners (name,displayname,description,jsonconfig) values -('mosaik', 'Mosaik', 'Mosaik is suitable for longer reads and has the option to retain multiple hits per read. The only downside is that it can be slower. When this pipeline was first written, this aligner was preferred for sequence-based genotyping and similar applications which require retaining multiple hits. It supports paired end reads. The aligner is still good; however, Lastz also seems to perform well for SBT.', '[{"xtype":"hidden","name":"pairedEnd","value":"true"},{"name":"mosaik.output_multiple","fieldLabel":"Retain All Hits","xtype":"checkbox","renderData":{"helpPopup":"If selected, all hits above thresholds will be reported. If not, only a single hit will be retained."},"checked":true},{"name":"mosaik.max_mismatch_pct","fieldLabel":"Max Mismatch Pct","renderData":{"helpPopup":"The maximum percent of bases allowed to mismatch per alignment. Note: Ns are counted as mismatches"},"value":0.02,"minValue":0,"maxValue":1},{"name":"mosaik.hash_size","fieldLabel":"Hash Size","renderData":{"helpPopup":"The hash size used in alignment (see Mosaik documentation). A large value is preferred for sequences expected to be highly similar to the reference"},"minValue":0,"value":32},{"name":"mosaik.max_hash_positions","fieldLabel":"Max Hash Positions","renderData":{"helpPopup":"The maximum number of hash matches that are passed to local alignment."},"minValue":0,"value":200},{"name":"mosaik.align_threshold","fieldLabel":"Alignment Threshold","renderData":{"helpPopup":"The alignment score required for an alignment to continue to local alignment. Because the latter is slow, a higher value can improve speed."},"value":55}]'); diff --git a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-12.10-12.11.sql b/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-12.10-12.11.sql deleted file mode 100644 index bae816224..000000000 --- a/SequenceAnalysis/resources/schemas/dbscripts/sqlserver/obsolete/SequenceAnalysis-12.10-12.11.sql +++ /dev/null @@ -1,80 +0,0 @@ -/* - * Copyright (c) 2012 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -CREATE TABLE sequenceanalysis.instruments ( - rowId INT IDENTITY(1,1) NOT NULL, - displayName varchar(200), - identifier varchar(200), - platform varchar(200), - location varchar(200), - - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_instruments PRIMARY KEY (rowId) -); - -CREATE TABLE sequenceanalysis.instrument_runs ( - rowId INT IDENTITY(1,1) NOT NULL, - runDate DATETIME, - name varchar(200), - instrumentId integer, - comment varchar(4000), - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_instrument_runs PRIMARY KEY (rowId) -); - -CREATE TABLE sequenceanalysis.quality_metrics ( - rowid INT IDENTITY(1,1) NOT NULL, - runId integer, - dataId integer, - metricName varchar(200), - metricValue float, - qualValue varchar(100), - comment varchar(4000), - - Container ENTITYID NOT NULL, - CreatedBy USERID, - Created DATETIME, - ModifiedBy USERID, - Modified DATETIME, - - CONSTRAINT PK_quality_metrics PRIMARY KEY (rowId) -); - -CREATE TABLE sequenceanalysis.quality_metrics_types ( - type varchar(200), - CONSTRAINT PK_quality_metrics_types PRIMARY KEY (type) -); - -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Total Sequences'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Filtered Sequences'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Avg Sequence Length'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Min Sequence Length'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('Max Sequence Length'); -INSERT INTO sequenceanalysis.quality_metrics_types (type) VALUES ('%GC'); - -ALTER TABLE sequenceanalysis.sequence_readsets DROP COLUMN machine_run_id; -ALTER TABLE sequenceanalysis.sequence_readsets ADD instrument_run_id integer; -ALTER TABLE sequenceanalysis.sequence_readsets ADD runid integer; \ No newline at end of file diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/AlignmentSummaryGroupedTableInfo.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/AlignmentSummaryGroupedTableInfo.java index 7fdd87800..fd855290d 100644 --- a/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/AlignmentSummaryGroupedTableInfo.java +++ b/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/AlignmentSummaryGroupedTableInfo.java @@ -126,7 +126,6 @@ private void setupColumns() protected SQLFragment getFromSQL() { final SqlDialect sd = getUserSchema().getDbSchema().getSqlDialect(); - final String chr = sd.isPostgreSQL() ? "chr" : "char"; return new SQLFragment("SELECT\n" + "a.rowid as analysis_id,\n" + @@ -146,7 +145,7 @@ protected SQLFragment getFromSQL() "al.total_reverse,\n" + "al.valid_pairs,\n" + "(SELECT sum(s.total) as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ALIGNMENT_SUMMARY + " s WHERE s.analysis_id = a.rowId) as total_reads_in_analysis,\n" + - "(SELECT ").append(sd.getGroupConcat(new SQLFragment("hs.haplotype"), true, true, new SQLFragment(chr + "(10)"))). + "(SELECT ").append(sd.getGroupConcat(new SQLFragment("hs.haplotype"), true, true, new SQLFragment("chr(10)"))). append(" as expr FROM sequenceanalysis.haplotype_sequences hs JOIN sequenceanalysis.haplotypes ht ON (hs.haplotype = ht.name) WHERE ht.datedisabled IS NULL AND ((hs.type = 'Lineage' AND hs.name = nt.lineage) OR (hs.type = 'Allele' AND hs.name = nt.name))) as haplotypesWithAllele\n" + "\n" + "FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ANALYSES + " a\n" + "JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ALIGNMENT_SUMMARY + " al ON (a.RowId = al.analysis_id)\n" + diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisCustomizer.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisCustomizer.java index 65261456c..b7d65fcbb 100644 --- a/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisCustomizer.java +++ b/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisCustomizer.java @@ -53,31 +53,10 @@ public void customize(TableInfo tableInfo) { LDKService.get().getDefaultTableCustomizer().customize(ti); - if (tableInfo.getName().equalsIgnoreCase(SequenceAnalysisSchema.TABLE_REF_NT_SEQUENCES)) - { - //behaves slowly on postgres - if (tableInfo.getSqlDialect().isSqlServer()) - { - LDKService.get().applyNaturalSort(ti, "name"); - } - } - else if (tableInfo.getName().equalsIgnoreCase(SequenceAnalysisSchema.TABLE_INSTRUMENT_RUNS)) - { - if (tableInfo.getSqlDialect().isSqlServer()) - { - LDKService.get().applyNaturalSort(ti, "name"); - } - } - else if (tableInfo.getName().equalsIgnoreCase(SequenceAnalysisSchema.TABLE_OUTPUTFILES)) + if (tableInfo.getName().equalsIgnoreCase(SequenceAnalysisSchema.TABLE_OUTPUTFILES)) { LaboratoryService.get().getLaboratoryTableCustomizer().customize(tableInfo); - //behaves slowly on postgres - if (tableInfo.getSqlDialect().isSqlServer()) - { - LDKService.get().applyNaturalSort(ti, "name"); - } - addFileSetCol(ti); } diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisUserSchema.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisUserSchema.java index 162a93f6e..32e056b9d 100644 --- a/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisUserSchema.java +++ b/SequenceAnalysis/src/org/labkey/sequenceanalysis/query/SequenceAnalysisUserSchema.java @@ -193,9 +193,8 @@ private TableInfo createAnalysesTable(TableInfo sourceTable, ContainerFilter cf) if (ret.getColumn("outputFileTypes") == null) { - String chr = sourceTable.getSqlDialect().isPostgreSQL() ? "chr" : "char"; SQLFragment sql = new SQLFragment("(SELECT "). - append(sourceTable.getSqlDialect().getGroupConcat(new SQLFragment("rd.category"), true, true, new SQLFragment(chr + "(10)"))). + append(sourceTable.getSqlDialect().getGroupConcat(new SQLFragment("rd.category"), true, true, new SQLFragment("chr(10)"))). append(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_OUTPUTFILES + " rd WHERE rd.analysis_id = " + ExprColumn.STR_TABLE_ALIAS + ".rowid)"); ExprColumn newCol = new ExprColumn(ret, "outputFileTypes", sql, JdbcType.VARCHAR, sourceTable.getColumn("rowid")); newCol.setLabel("Output File Types"); @@ -249,8 +248,7 @@ private TableInfo createOutputFiles(TableInfo sourceTable, ContainerFilter cf) if (ret.getColumn("analysisSets") == null) { - String chr = sourceTable.getSqlDialect().isPostgreSQL() ? "chr" : "char"; - SQLFragment sql = new SQLFragment("(SELECT ").append(ret.getSqlDialect().getGroupConcat(new SQLFragment("a.name"), true, true, new SQLFragment(chr + "(10)"))).append(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ANALYSIS_SET_MEMBERS + " asm JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ANALYSIS_SETS + " a ON (asm.analysisSet = a.rowid) WHERE asm.dataid = " + ExprColumn.STR_TABLE_ALIAS + ".dataid)"); + SQLFragment sql = new SQLFragment("(SELECT ").append(ret.getSqlDialect().getGroupConcat(new SQLFragment("a.name"), true, true, new SQLFragment("chr(10)"))).append(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ANALYSIS_SET_MEMBERS + " asm JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ANALYSIS_SETS + " a ON (asm.analysisSet = a.rowid) WHERE asm.dataid = " + ExprColumn.STR_TABLE_ALIAS + ".dataid)"); ExprColumn newCol = new ExprColumn(ret, "analysisSets", sql, JdbcType.VARCHAR, sourceTable.getColumn("rowid")); newCol.setURL(DetailsURL.fromString("/query/executeQuery.view?schemaName=sequenceanalysis&query.queryName=analysisSetMembers&query.dataid~eq=${dataid}", ret.getContainer().isWorkbook() ? ret.getContainer().getParent() : ret.getContainer())); newCol.setLabel("Analyses Using This File"); @@ -378,8 +376,7 @@ public void renderGridCellContents(RenderContext ctx, HtmlWriter out) if (ret.getColumn("distinctGenomes") == null) { - String chr = ret.getSqlDialect().isPostgreSQL() ? "chr" : "char"; - SQLFragment sql = new SQLFragment("(SELECT ").append(ret.getSqlDialect().getGroupConcat(new SQLFragment("l.name"), true, true, new SQLFragment(chr + "(10)"))).append(new SQLFragment(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ANALYSES + " a JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_REF_LIBRARIES + " l ON (a.library_id = l.rowid) WHERE a.readset = " + ExprColumn.STR_TABLE_ALIAS + ".rowid)")); + SQLFragment sql = new SQLFragment("(SELECT ").append(ret.getSqlDialect().getGroupConcat(new SQLFragment("l.name"), true, true, new SQLFragment("chr(10)"))).append(new SQLFragment(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_ANALYSES + " a JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_REF_LIBRARIES + " l ON (a.library_id = l.rowid) WHERE a.readset = " + ExprColumn.STR_TABLE_ALIAS + ".rowid)")); ExprColumn newCol = new ExprColumn(ret, "distinctGenomes", sql, JdbcType.VARCHAR, sourceTable.getColumn("rowid")); newCol.setLabel("Genomes With Alignments For Readset"); newCol.setWidth("200"); @@ -401,9 +398,8 @@ public void renderGridCellContents(RenderContext ctx, HtmlWriter out) if (ret.getColumn("outputFileTypes") == null) { - String chr = sourceTable.getSqlDialect().isPostgreSQL() ? "chr" : "char"; SQLFragment sql = new SQLFragment("(SELECT "). - append(sourceTable.getSqlDialect().getGroupConcat(new SQLFragment("rd.category"), true, true, new SQLFragment(chr + "(10)"))). + append(sourceTable.getSqlDialect().getGroupConcat(new SQLFragment("rd.category"), true, true, new SQLFragment("chr(10)"))). append(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_OUTPUTFILES + " rd WHERE rd.readset = " + ExprColumn.STR_TABLE_ALIAS + ".rowid)"); ExprColumn newCol = new ExprColumn(ret, "outputFileTypes", sql, JdbcType.VARCHAR, sourceTable.getColumn("rowid")); newCol.setLabel("Output File Types"); @@ -416,8 +412,7 @@ public void renderGridCellContents(RenderContext ctx, HtmlWriter out) if (ret.getColumn("distinctOutputGenomes") == null) { - String chr = ret.getSqlDialect().isPostgreSQL() ? "chr" : "char"; - SQLFragment sql = new SQLFragment("(SELECT ").append(ret.getSqlDialect().getGroupConcat(new SQLFragment("l.name"), true, true, new SQLFragment(chr + "(10)"))).append(new SQLFragment(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_OUTPUTFILES + " a JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_REF_LIBRARIES + " l ON (a.library_id = l.rowid) WHERE a.readset = " + ExprColumn.STR_TABLE_ALIAS + ".rowid)")); + SQLFragment sql = new SQLFragment("(SELECT ").append(ret.getSqlDialect().getGroupConcat(new SQLFragment("l.name"), true, true, new SQLFragment("chr(10)"))).append(new SQLFragment(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_OUTPUTFILES + " a JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_REF_LIBRARIES + " l ON (a.library_id = l.rowid) WHERE a.readset = " + ExprColumn.STR_TABLE_ALIAS + ".rowid)")); ExprColumn newCol = new ExprColumn(ret, "distinctOutputGenomes", sql, JdbcType.VARCHAR, sourceTable.getColumn("rowid")); newCol.setLabel("Output File Genomes For Readset"); newCol.setWidth("200"); @@ -517,8 +512,7 @@ public void renderGridCellContents(RenderContext ctx, HtmlWriter out) private TableInfo createRefSequencesTable(TableInfo sourceTable) { SharedDataTable ret = new SharedDataTable<>(this, sourceTable); - String chr = sourceTable.getSqlDialect().isPostgreSQL() ? "chr" : "char"; - SQLFragment sql = new SQLFragment("(SELECT ").append(sourceTable.getSqlDialect().getGroupConcat(new SQLFragment("r.name"), true, true, new SQLFragment(chr + "(10)"))).append(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_REF_LIBRARY_MEMBERS + " rm JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_REF_LIBRARIES + " r ON (rm.library_id = r.rowid) WHERE rm.ref_nt_id = " + ExprColumn.STR_TABLE_ALIAS + ".rowid)"); + SQLFragment sql = new SQLFragment("(SELECT ").append(sourceTable.getSqlDialect().getGroupConcat(new SQLFragment("r.name"), true, true, new SQLFragment("chr(10)"))).append(" as expr FROM " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_REF_LIBRARY_MEMBERS + " rm JOIN " + SequenceAnalysisSchema.SCHEMA_NAME + "." + SequenceAnalysisSchema.TABLE_REF_LIBRARIES + " r ON (rm.library_id = r.rowid) WHERE rm.ref_nt_id = " + ExprColumn.STR_TABLE_ALIAS + ".rowid)"); ExprColumn newCol = new ExprColumn(ret, "genomes", sql, JdbcType.VARCHAR, sourceTable.getColumn("rowid")); newCol.setLabel("Genome(s) Using Sequence"); newCol.setWidth("200"); diff --git a/SequenceAnalysis/test/src/org/labkey/test/tests/external/labModules/SequenceTest.java b/SequenceAnalysis/test/src/org/labkey/test/tests/external/labModules/SequenceTest.java index a8c49a0c7..5c4075305 100644 --- a/SequenceAnalysis/test/src/org/labkey/test/tests/external/labModules/SequenceTest.java +++ b/SequenceAnalysis/test/src/org/labkey/test/tests/external/labModules/SequenceTest.java @@ -116,7 +116,7 @@ public static boolean isExternalPipelineEnabled(String containerPath) TestLogger.log("sequencePipelineEnabled: " + sequencePipelineEnabled); - if (!sequencePipelineEnabled && TestProperties.isTestRunningOnTeamCity() && WebTestHelper.getDatabaseType() == WebTestHelper.DatabaseType.PostgreSQL) + if (!sequencePipelineEnabled && TestProperties.isTestRunningOnTeamCity()) { throw new IllegalStateException("When running on team city, -DsequencePipelineEnabled should be true"); } diff --git a/Studies/module.properties b/Studies/module.properties index 409145eca..bfb5c3c4c 100644 --- a/Studies/module.properties +++ b/Studies/module.properties @@ -4,4 +4,3 @@ Description: Extensions to the study framework, designed to more flexibly manage License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 ManageVersion: false -SupportedDatabases: mssql, pgsql diff --git a/Studies/resources/schemas/dbscripts/sqlserver/studies-0.00-23.000.sql b/Studies/resources/schemas/dbscripts/sqlserver/studies-0.00-23.000.sql deleted file mode 100644 index c3873a08d..000000000 --- a/Studies/resources/schemas/dbscripts/sqlserver/studies-0.00-23.000.sql +++ /dev/null @@ -1,2 +0,0 @@ -CREATE SCHEMA studies; -GO \ No newline at end of file diff --git a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.000-23.001.sql b/Studies/resources/schemas/dbscripts/sqlserver/studies-23.000-23.001.sql deleted file mode 100644 index fe59ea113..000000000 --- a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.000-23.001.sql +++ /dev/null @@ -1,34 +0,0 @@ -CREATE TABLE studies.lookup_sets ( - rowid int identity(1,1), - setname nvarchar(100), - label nvarchar(500), - description nvarchar(MAX), - keyField nvarchar(MAX), - titleColumn nvarchar(MAX), - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_lookup_sets PRIMARY KEY (rowid) -); - -CREATE TABLE studies.lookups ( - rowid int identity(1,1), - setname nvarchar(100), - value nvarchar(MAX), - title nvarchar(MAX), - category nvarchar(MAX), - description nvarchar(MAX), - sort_order int, - date_disabled datetime, - objectid nvarchar(100), - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_lookups PRIMARY KEY (rowid) -); \ No newline at end of file diff --git a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.001-23.002.sql b/Studies/resources/schemas/dbscripts/sqlserver/studies-23.001-23.002.sql deleted file mode 100644 index 5d7d6b54d..000000000 --- a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.001-23.002.sql +++ /dev/null @@ -1,90 +0,0 @@ -CREATE TABLE studies.studies ( - rowid int identity(1,1), - studyName varchar(1000), - label varchar(1000), - category varchar(1000), - description varchar(4000), - - lsid entityid, - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_studies PRIMARY KEY (rowid) -); - -CREATE TABLE studies.studyCohorts ( - rowid int identity(1,1), - studyId int, - cohortName varchar(4000), - label varchar(4000), - category varchar(4000), - description varchar(4000), - isControlGroup bit default 0, - sortOrder int, - - lsid entityid, - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_studyCohorts PRIMARY KEY (rowid) -); - -CREATE TABLE studies.anchorEvents ( - rowid int identity(1,1), - studyId int, - label varchar(4000), - description varchar(4000), - eventProviderName varchar(1000), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_anchorEvents PRIMARY KEY (rowid) -); - -CREATE TABLE studies.expectedTimepoints ( - rowid int identity(1,1), - studyId int, - cohortId int, - label varchar(4000), - labelShort varchar(100), - description varchar(4000), - numericLabel int, - anchorEvent int, - rangeMin int, - rangeMax int, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_expectedTimepoints PRIMARY KEY (rowid) -); - -CREATE TABLE studies.timepointToDate ( - rowid int identity(1,1), - subjectId varchar(4000), - timepointId int, - dateMin datetime, - dateMax datetime, - isManualOverride bit default 0, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_timepointToDate PRIMARY KEY (rowid) -); \ No newline at end of file diff --git a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.002-23.003.sql b/Studies/resources/schemas/dbscripts/sqlserver/studies-23.002-23.003.sql deleted file mode 100644 index e4da213bd..000000000 --- a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.002-23.003.sql +++ /dev/null @@ -1,15 +0,0 @@ -CREATE TABLE studies.subjectAnchorDates ( - rowid int identity(1,1), - subjectId varchar(4000), - date int, - eventLabel varchar(1000), - anchorEventId int, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_subjectAnchorDates PRIMARY KEY (rowid) -); \ No newline at end of file diff --git a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.003-23.004.sql b/Studies/resources/schemas/dbscripts/sqlserver/studies-23.003-23.004.sql deleted file mode 100644 index 7d620921d..000000000 --- a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.003-23.004.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE studies.subjectAnchorDates DROP COLUMN date; -ALTER TABLE studies.subjectAnchorDates ADD date datetime; diff --git a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.004-23.005.sql b/Studies/resources/schemas/dbscripts/sqlserver/studies-23.004-23.005.sql deleted file mode 100644 index 8ed4561af..000000000 --- a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.004-23.005.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE studies.subjectAnchorDates ADD dataSource varchar(1000); diff --git a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.005-23.006.sql b/Studies/resources/schemas/dbscripts/sqlserver/studies-23.005-23.006.sql deleted file mode 100644 index 1acef5825..000000000 --- a/Studies/resources/schemas/dbscripts/sqlserver/studies-23.005-23.006.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE studies.subjectAnchorDates ADD sourceRecord varchar(1000); diff --git a/Studies/src/org/labkey/studies/query/StudiesUserSchema.java b/Studies/src/org/labkey/studies/query/StudiesUserSchema.java index 8145559c4..8bdc0d011 100644 --- a/Studies/src/org/labkey/studies/query/StudiesUserSchema.java +++ b/Studies/src/org/labkey/studies/query/StudiesUserSchema.java @@ -211,8 +211,7 @@ private TableInfo createStudiesTable(String name, ContainerFilter cf) { CustomPermissionsTable ret = createStudyDesignTable(name, cf, false); - final String chr = ret.getSqlDialect().isPostgreSQL() ? "chr" : "char"; - SQLFragment sql1 = new SQLFragment("(SELECT ").append(ret.getSqlDialect().getGroupConcat(new SQLFragment("coalesce(c.label, c.cohortName)"), true, true, new SQLFragment(chr + "(10)"))).append(" as expr FROM " + StudiesSchema.NAME + "." + TABLE_COHORTS + " c WHERE c.studyId = " + ExprColumn.STR_TABLE_ALIAS + ".rowId)"); + SQLFragment sql1 = new SQLFragment("(SELECT ").append(ret.getSqlDialect().getGroupConcat(new SQLFragment("coalesce(c.label, c.cohortName)"), true, true, new SQLFragment("chr(10)"))).append(" as expr FROM " + StudiesSchema.NAME + "." + TABLE_COHORTS + " c WHERE c.studyId = " + ExprColumn.STR_TABLE_ALIAS + ".rowId)"); ExprColumn col1 = new ExprColumn(ret, "cohorts", sql1, JdbcType.VARCHAR, ret.getColumn("rowid")); col1.setLabel("Cohort(s)"); col1.setDescription("This column lists the cohort labels for this study"); diff --git a/blast/module.properties b/blast/module.properties index 0225e6d3d..b88cadc62 100644 --- a/blast/module.properties +++ b/blast/module.properties @@ -5,4 +5,3 @@ ManageVersion: false URL: https://github.com/BimberLab/DiscvrLabKeyModules License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 -SupportedDatabases: mssql, pgsql diff --git a/blast/resources/schemas/dbscripts/sqlserver/blast-13.30-13.31.sql b/blast/resources/schemas/dbscripts/sqlserver/blast-13.30-13.31.sql deleted file mode 100644 index 2fbca5bcd..000000000 --- a/blast/resources/schemas/dbscripts/sqlserver/blast-13.30-13.31.sql +++ /dev/null @@ -1,54 +0,0 @@ -/* - * Copyright (c) 2014 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -CREATE SCHEMA blast; -GO - -CREATE TABLE blast.databases ( - rowid int identity(1,1), - name varchar(1000), - description varchar(1000), - libraryid int, - objectid entityid, - datedisabled datetime, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_databases PRIMARY KEY (objectid) -); - -CREATE TABLE blast.blast_jobs ( - rowid int identity(1,1), - databaseid entityid, - title varchar(500), - - params text, - saveResults bit, - hasRun bit default 0, - objectid entityid, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_blast_jobs PRIMARY KEY (objectid) -); \ No newline at end of file diff --git a/blast/resources/schemas/dbscripts/sqlserver/blast-13.31-13.32.sql b/blast/resources/schemas/dbscripts/sqlserver/blast-13.31-13.32.sql deleted file mode 100644 index 9659c2ebf..000000000 --- a/blast/resources/schemas/dbscripts/sqlserver/blast-13.31-13.32.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE blast.blast_jobs ADD jobid entityid; -ALTER TABLE blast.blast_jobs ADD htmlFile int; \ No newline at end of file diff --git a/blast/resources/schemas/dbscripts/sqlserver/blast-13.32-13.33.sql b/blast/resources/schemas/dbscripts/sqlserver/blast-13.32-13.33.sql deleted file mode 100644 index 76e21825b..000000000 --- a/blast/resources/schemas/dbscripts/sqlserver/blast-13.32-13.33.sql +++ /dev/null @@ -1 +0,0 @@ -EXEC core.executeJavaUpgradeCode 'migrateDatabaseDirs'; diff --git a/cluster/module.properties b/cluster/module.properties index a43879c08..8f83c9c20 100644 --- a/cluster/module.properties +++ b/cluster/module.properties @@ -5,4 +5,3 @@ URL: https://github.com/BimberLab/DiscvrLabKeyModules License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 ManageVersion: false -SupportedDatabases: mssql, pgsql diff --git a/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.20-15.21.sql b/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.20-15.21.sql deleted file mode 100644 index aac133d4f..000000000 --- a/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.20-15.21.sql +++ /dev/null @@ -1,60 +0,0 @@ -/* - * Copyright (c) 2015 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - --- Create schema, tables, indexes, and constraints used for HTCondorConnector module here --- All SQL VIEW definitions should be created in htcondorconnector-create.sql and dropped in htcondorconnector-drop.sql -CREATE SCHEMA cluster; -GO -CREATE TABLE cluster.clusterJobs ( - rowId int identity(1,1), - - clusterId NVARCHAR(255), - jobId NVARCHAR(255), - hasStarted bit, - status NVARCHAR(100), - location NVARCHAR(1000), - activeTaskId NVARCHAR(1000), - clusterUser NVARCHAR(100), - lastStatusCheck datetime, - - container ENTITYID NOT NULL, - createdBy USERID, - created datetime, - modifiedBy USERID, - modified datetime, - - CONSTRAINT PK_clusterJobs PRIMARY KEY (rowId) -); -GO - -CREATE PROCEDURE cluster.handleUpgrade AS - BEGIN - IF EXISTS( SELECT * FROM sys.schemas WHERE name = 'htcondorconnector' ) - BEGIN - INSERT INTO cluster.clusterJobs (clusterId, jobId, hasStarted, status, location, activeTaskId, lastStatusCheck, container, createdBy, created, modifiedBy, modified) - SELECT condorId as clusterId, jobId, hasStarted, status, location, activeTaskId, lastStatusCheck, container, createdBy, created, modifiedBy, modified - FROM htcondorconnector.condorJobs; - END - END; -GO - -EXEC cluster.handleUpgrade -GO - -DROP PROCEDURE cluster.handleUpgrade -GO - -EXEC core.fn_dropifexists '*', 'htcondorconnector', 'SCHEMA'; \ No newline at end of file diff --git a/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.22-15.23.sql b/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.22-15.23.sql deleted file mode 100644 index b555d614e..000000000 --- a/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.22-15.23.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE cluster.clusterJobs ADD statusFileId int; \ No newline at end of file diff --git a/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.23-15.24.sql b/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.23-15.24.sql deleted file mode 100644 index d2ab60325..000000000 --- a/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.23-15.24.sql +++ /dev/null @@ -1,4 +0,0 @@ -ALTER TABLE cluster.clusterJobs ADD hostname varchar(1000); -ALTER TABLE cluster.clusterJobs ADD logModified datetime; - -ALTER TABLE cluster.clusterJobs DROP COLUMN hasStarted; \ No newline at end of file diff --git a/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.24-15.25.sql b/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.24-15.25.sql deleted file mode 100644 index 0e742b307..000000000 --- a/cluster/resources/schemas/dbscripts/sqlserver/cluster-15.24-15.25.sql +++ /dev/null @@ -1,4 +0,0 @@ -ALTER TABLE cluster.clusterJobs ADD clusterAccount nvarchar(1000); -ALTER TABLE cluster.clusterJobs ADD duration double precision; -ALTER TABLE cluster.clusterJobs ADD cpuUsed int; -ALTER TABLE cluster.clusterJobs ADD gpuUsed int; diff --git a/discvrcore/module.properties b/discvrcore/module.properties index dbab1c3e9..7e0e08720 100644 --- a/discvrcore/module.properties +++ b/discvrcore/module.properties @@ -5,4 +5,3 @@ URL: https://github.com/BimberLab/DiscvrLabKeyModules License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 ManageVersion: false -SupportedDatabases: mssql, pgsql diff --git a/discvrcore/resources/schemas/dbscripts/sqlserver/discvrcore-0.00-20.000.sql b/discvrcore/resources/schemas/dbscripts/sqlserver/discvrcore-0.00-20.000.sql deleted file mode 100644 index b8a82118b..000000000 --- a/discvrcore/resources/schemas/dbscripts/sqlserver/discvrcore-0.00-20.000.sql +++ /dev/null @@ -1,20 +0,0 @@ -/* - * Copyright (c) 2020 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - --- Create schema, tables, indexes, and constraints used for DiscvrCore module here --- All SQL VIEW definitions should be created in discvrcore-create.sql and dropped in discvrcore-drop.sql -CREATE SCHEMA discvrcore; -GO \ No newline at end of file diff --git a/discvrcore/src/org/labkey/discvrcore/AuditSummaryUserSchema.java b/discvrcore/src/org/labkey/discvrcore/AuditSummaryUserSchema.java index ce7236f5c..bc36350f7 100644 --- a/discvrcore/src/org/labkey/discvrcore/AuditSummaryUserSchema.java +++ b/discvrcore/src/org/labkey/discvrcore/AuditSummaryUserSchema.java @@ -137,14 +137,7 @@ private SimpleTable generateAuditSql(String tableName, String eventType, Cont ColumnInfo lsid = st.getColumn("lsid"); if (lsid != null) { - if (st.getSqlDialect().isPostgreSQL()) - { - st.addColumn(new ExprColumn(st, FieldKey.fromString("primaryKey"), new SQLFragment("right(" + ExprColumn.STR_TABLE_ALIAS + ".lsid, position('.' IN reverse(" + ExprColumn.STR_TABLE_ALIAS + ".lsid))-1)"), JdbcType.VARCHAR, lsid)); - } - else if (ti.getSqlDialect().isSqlServer()) - { - st.addColumn(new ExprColumn(st, FieldKey.fromString("primaryKey"), new SQLFragment("right(" + ExprColumn.STR_TABLE_ALIAS + ".lsid, charindex('.', reverse(" + ExprColumn.STR_TABLE_ALIAS + ".lsid))-1)"), JdbcType.VARCHAR, lsid)); - } + st.addColumn(new ExprColumn(st, FieldKey.fromString("primaryKey"), new SQLFragment("right(" + ExprColumn.STR_TABLE_ALIAS + ".lsid, position('.' IN reverse(" + ExprColumn.STR_TABLE_ALIAS + ".lsid))-1)"), JdbcType.VARCHAR, lsid)); } return st; diff --git a/jbrowse/module.properties b/jbrowse/module.properties index c1ec4407f..881427e89 100644 --- a/jbrowse/module.properties +++ b/jbrowse/module.properties @@ -5,4 +5,3 @@ Description: This module provides a wrapper about the JBrowse genome browser, in URL: https://github.com/BimberLab/DiscvrLabKeyModules License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 -SupportedDatabases: mssql, pgsql diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.30-13.31.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.30-13.31.sql deleted file mode 100644 index b15f70c6e..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.30-13.31.sql +++ /dev/null @@ -1,63 +0,0 @@ -/* - * Copyright (c) 2014 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - --- Create schema, tables, indexes, and constraints used for JBrowse module here --- All SQL VIEW definitions should be created in jbrowse-create.sql and dropped in jbrowse-drop.sql -CREATE SCHEMA jbrowse; -GO - -CREATE TABLE jbrowse.jsonfiles ( - trackid int, - relpath varchar(1000), - objectid entityid, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_jsonfiles PRIMARY KEY (objectid) -); - -CREATE TABLE jbrowse.databases ( - rowid int identity(1,1), - name varchar(100), - description varchar(4000), - objectid entityid, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_databases PRIMARY KEY (objectid) -); - -CREATE TABLE jbrowse.database_members ( - rowid int identity(1,1), - "database" entityid, - jsonfile entityid, - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_database_members PRIMARY KEY (rowid) -); \ No newline at end of file diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.31-13.32.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.31-13.32.sql deleted file mode 100644 index 2b82c4a27..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.31-13.32.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE jbrowse.jsonfiles ADD sequenceid int; \ No newline at end of file diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.32-13.33.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.32-13.33.sql deleted file mode 100644 index 2f4bf0d38..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.32-13.33.sql +++ /dev/null @@ -1,3 +0,0 @@ -ALTER TABLE jbrowse.jsonfiles ADD dataid int; - -ALTER TABLE jbrowse.databases ADD temporary bit; \ No newline at end of file diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.33-13.34.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.33-13.34.sql deleted file mode 100644 index 2e84c7f9f..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.33-13.34.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE jbrowse.database_members ADD category varchar(200); \ No newline at end of file diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.34-13.35.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.34-13.35.sql deleted file mode 100644 index c6b80371b..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.34-13.35.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE jbrowse.databases ADD jobid entityid; -ALTER TABLE jbrowse.databases ADD libraryId int; \ No newline at end of file diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.35-13.36.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.35-13.36.sql deleted file mode 100644 index 0cbe1ef26..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.35-13.36.sql +++ /dev/null @@ -1,2 +0,0 @@ -ALTER TABLE jbrowse.jsonfiles ADD outputfile int; -ALTER TABLE jbrowse.jsonfiles DROP COLUMN dataid; \ No newline at end of file diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.36-13.37.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.36-13.37.sql deleted file mode 100644 index 71871a090..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.36-13.37.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE jbrowse.jsonfiles ADD trackJson varchar(max); \ No newline at end of file diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.37-13.38.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.37-13.38.sql deleted file mode 100644 index d352e7c3b..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.37-13.38.sql +++ /dev/null @@ -1,6 +0,0 @@ -ALTER TABLE jbrowse.databases ADD primarydb bit; -ALTER TABLE jbrowse.databases ADD createOwnIndex bit; -GO -UPDATE jbrowse.databases SET primarydb = 0; -UPDATE jbrowse.databases SET createOwnIndex = 0; -UPDATE jbrowse.databases SET temporary = 0; \ No newline at end of file diff --git a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.38-13.39.sql b/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.38-13.39.sql deleted file mode 100644 index 33ad3f2d4..000000000 --- a/jbrowse/resources/schemas/dbscripts/sqlserver/jbrowse-13.38-13.39.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE jbrowse.databases ADD jsonConfig NVARCHAR(max); \ No newline at end of file diff --git a/singlecell/module.properties b/singlecell/module.properties index 00d97587a..d79b4173a 100644 --- a/singlecell/module.properties +++ b/singlecell/module.properties @@ -5,4 +5,3 @@ URL: https://github.com/BimberLab/DiscvrLabKeyModules License: Apache 2.0 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0 ManageVersion: false -SupportedDatabases: mssql, pgsql diff --git a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-0.00-20.000.sql b/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-0.00-20.000.sql deleted file mode 100644 index 8a9bdf79b..000000000 --- a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-0.00-20.000.sql +++ /dev/null @@ -1,20 +0,0 @@ -/* - * Copyright (c) 2020 LabKey Corporation - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - --- Create schema, tables, indexes, and constraints used for SingleCell module here --- All SQL VIEW definitions should be created in singlecell-create.sql and dropped in singlecell-drop.sql -CREATE SCHEMA singlecell; -GO \ No newline at end of file diff --git a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.000-20.001.sql b/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.000-20.001.sql deleted file mode 100644 index 4b90f4b9b..000000000 --- a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.000-20.001.sql +++ /dev/null @@ -1,132 +0,0 @@ -CREATE TABLE singlecell.cdna_libraries ( - rowid int IDENTITY(1,1), - sortid int, - chemistry nvarchar(200), - concentration float, - plateId nvarchar(200), - well nvarchar(100), - readsetid int, - tcrreadsetid int, - hashingReadsetId int, - citeseqReadsetId int, - citeseqPanel nvarchar(100), - - comment nvarchar(4000), - status nvarchar(200), - - lsid LSIDtype, - container ENTITYID, - created datetime, - createdby int, - modified datetime, - modifiedby int, - CONSTRAINT PK_cdna_libraries PRIMARY KEY (rowid) -); - -CREATE TABLE singlecell.stim_types( - rowid int IDENTITY(1,1), - name nvarchar(200) NOT NULL, - category nvarchar(200), - type nvarchar(200), - - container ENTITYID, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_stim_types PRIMARY KEY (rowid) -); - -CREATE TABLE singlecell.assay_types( - rowid int IDENTITY(1,1), - name nvarchar(200) NOT NULL, - treatment nvarchar(1000), - description nvarchar(4000), - - container ENTITYID, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_assay_types PRIMARY KEY (rowid) -); - -CREATE TABLE singlecell.samples( - rowid int IDENTITY(1,1), - subjectId nvarchar(100), - sampledate datetime, - tissue nvarchar(4000), - celltype nvarchar(1000), - stim nvarchar(4000), - assaytype nvarchar(4000), - comment nvarchar(4000), - status nvarchar(200), - - lsid LSIDtype, - container ENTITYID, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_stims PRIMARY KEY (rowid) -); - -CREATE TABLE singlecell.sorts( - rowid int IDENTITY(1,1), - sampleid int, - population nvarchar(1000), - replicate nvarchar(100), - cells int, - plateId nvarchar(100), - well nvarchar(100), - buffer nvarchar(200), - hto nvarchar(100), - comment nvarchar(4000), - - lsid LSIDtype, - container ENTITYID, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - CONSTRAINT PK_sorts PRIMARY KEY (rowid) -); - -CREATE TABLE singlecell.citeseq_panels ( - rowid int IDENTITY(1,1), - name nvarchar(100), - antibody nvarchar(100), - markerLabel nvarchar(100), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - constraint PK_citeseq_panels PRIMARY KEY (rowid) -); - -CREATE TABLE singlecell.citeseq_antibodies ( - rowid int IDENTITY(1,1), - antibodyName nvarchar(100), - markerName nvarchar(100), - markerLabel nvarchar(100), - cloneName nvarchar(100), - vendor nvarchar(100), - productId nvarchar(100), - barcodeName nvarchar(100), - adaptersequence nvarchar(4000), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - constraint PK_citeseq_antibodies PRIMARY KEY (rowid) -); diff --git a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.001-20.002.sql b/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.001-20.002.sql deleted file mode 100644 index 674fc68b4..000000000 --- a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.001-20.002.sql +++ /dev/null @@ -1,3 +0,0 @@ -ALTER TABLE singlecell.citeseq_antibodies ADD barcodePattern VARCHAR(100); -GO -UPDATE singlecell.citeseq_antibodies SET barcodePattern = '5PNNNNNNNNNN(BC)' WHERE barcodeName LIKE '%TotalSeq-C%'; \ No newline at end of file diff --git a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.002-20.003.sql b/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.002-20.003.sql deleted file mode 100644 index 3da332632..000000000 --- a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.002-20.003.sql +++ /dev/null @@ -1,15 +0,0 @@ -CREATE TABLE singlecell.hashing_labels ( - rowid int IDENTITY(1,1), - name nvarchar(100), - groupName nvarchar(100), - adaptersequence nvarchar(4000), - barcodePattern nvarchar(100), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - constraint PK_hashing_labels PRIMARY KEY (rowid) -); \ No newline at end of file diff --git a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.003-20.004.sql b/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.003-20.004.sql deleted file mode 100644 index f5f1d096c..000000000 --- a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.003-20.004.sql +++ /dev/null @@ -1,2 +0,0 @@ ---Accidentally deployed: -EXEC core.fn_dropifexists 'hashing_labels', 'singlecell', 'COLUMN', 'markerLabel'; \ No newline at end of file diff --git a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.004-20.005.sql b/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.004-20.005.sql deleted file mode 100644 index e6efd0ce0..000000000 --- a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.004-20.005.sql +++ /dev/null @@ -1,30 +0,0 @@ -CREATE TABLE singlecell.singlecellDatasets ( - rowid int IDENTITY(1,1), - name varchar(1000), - loupeFileId int, - readsetId int, - cDNAId int, - status nvarchar(100), - - container entityid, - created datetime, - createdby int, - modified datetime, - modifiedby int, - - constraint PK_singlecellDatasets PRIMARY KEY (rowid) -); - -GO - -INSERT INTO singlecell.singlecellDatasets -(loupeFileId, name, readsetId, cDNAId, status, container, created, createdby, modified, modifiedby) -SELECT - rowId as loupeFileId, - (SELECT name FROM sequenceanalysis.sequence_readsets WHERE sequence_readsets.rowid = readset) as name, - readset as readsetId, - (SELECT max(c.rowid) as cDNAId FROM singlecell.cdna_libraries c WHERE c.readsetId = outputfiles.readset) as cDNAId, - null as status, - - container, created, createdby, modified, modifiedby -FROM sequenceanalysis.outputfiles WHERE category = '10x Loupe File'; \ No newline at end of file diff --git a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.005-20.006.sql b/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.005-20.006.sql deleted file mode 100644 index e0d6b7153..000000000 --- a/singlecell/resources/schemas/dbscripts/sqlserver/singlecell-20.005-20.006.sql +++ /dev/null @@ -1 +0,0 @@ -ALTER TABLE singlecell.samples ADD disposition VARCHAR(1000); \ No newline at end of file