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DiseaseTranscriptomicsLab
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compbio-app-server
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compbio-app-server
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setup-testing-mode.sh
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compbio-app-server
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setup-testing-mode.sh
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#!/bin/bash
ROOT=$(dirname "$0")
NGINX_DIR=$ROOT/nginx
NGINX_CONFIG=$NGINX_DIR/nginx.conf
SHINYPROXY_DIR=$ROOT/shinyproxy
SHINYPROXY_DIR_REALPATH=$( realpath $SHINYPROXY_DIR )
SHINYPROXY_CONFIG=$SHINYPROXY_DIR/application.yml
SHINY_APPS_DIR=$SHINYPROXY_DIR/shiny-apps
msg () {
COL='\033[0;33m'
NO_COL='\033[0m' # No Color
echo -e "\n${COL}$@${NO_COL}"
}
${ROOT}/setup.sh
# Ignore SSL certificates -----------------------------------------------------
msg "Modifying files to ignore SSL certificates in testing..."
sed -i.bak -E 's/443 ssl/80/' $NGINX_CONFIG
sed -i.bak -E '/ssl/s/( *)/\1#/' $NGINX_CONFIG
msg " - Successfully changed $NGINX_CONFIG"
sed -i.bak -E 's/(server:)/#\1/' $SHINYPROXY_CONFIG
sed -i.bak -E 's/(secure-cookies:)/#\1/' $SHINYPROXY_CONFIG
sed -i.bak -E 's/(forward-headers-strategy:)/#\1/' $SHINYPROXY_CONFIG
sed -i.bak -E 's/(frame-options:)/#\1/' $SHINYPROXY_CONFIG
msg " - Successfully changed $SHINYPROXY_CONFIG"
# Setup test directories ------------------------------------------------------
echo
msg "Setting up directories for ShinyProxy apps in $SHINY_APPS_DIR..."
# Create test dirs
test_dirs=$(grep -o "/srv.*:" $SHINYPROXY_CONFIG | \
sed "s|/srv/apps|$SHINY_APPS_DIR|g" | sed 's/://g')
for i in ${test_dirs}; do mkdir -p $i; done
# Change ShinyProxy app directories used in shinyproxy/application.yml
sed -i.bak "s|/srv|$SHINYPROXY_DIR_REALPATH|g" $SHINYPROXY_CONFIG
msg " - Done! Add data for apps inside $SHINY_APPS_DIR"
msg "==========================\nEverything seems to be ready! Now simply run:"
msg " docker compose up -d"
msg "Then open your browser and go to http://localhost\n"
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